Wall clock time and date at job start Mon Mar 30 2020 07:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46712 * 2 1 4 4 C 1.50705 * 109.47097 * 240.00684 * 2 1 3 5 5 H 1.07998 * 119.99701 * 240.00045 * 4 2 1 6 6 C 1.37872 * 119.99883 * 59.99340 * 4 2 1 7 7 N 1.31513 * 120.00517 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99593 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46974 * 60.00444 * 8 6 4 10 10 H 1.48505 * 109.46875 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47340 * 300.00364 * 8 6 4 12 12 C 1.50697 * 109.47202 * 120.00105 * 2 1 3 13 13 O 1.21283 * 119.99731 * 120.00240 * 12 2 1 14 14 N 1.34770 * 120.00243 * 300.00317 * 12 2 1 15 15 C 1.46505 * 119.99926 * 180.02562 * 14 12 2 16 16 H 1.08992 * 109.47276 * 35.00193 * 15 14 12 17 17 C 1.52996 * 109.46998 * 274.99646 * 15 14 12 18 18 C 1.53000 * 109.47328 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 15 20 20 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 21 21 C 1.52992 * 109.47482 * 180.02562 * 19 18 17 22 22 C 1.53006 * 109.47127 * 300.00449 * 19 18 17 23 23 H 1.09000 * 109.47050 * 179.97438 * 22 19 18 24 24 C 1.53002 * 109.46977 * 299.99541 * 22 19 18 25 25 C 1.52997 * 109.47164 * 59.99836 * 22 19 18 26 26 H 1.09000 * 109.46944 * 60.00026 * 1 2 3 27 27 H 1.09004 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47073 * 299.99301 * 1 2 3 29 29 H 0.96994 * 120.00248 * 179.97438 * 7 6 4 30 30 H 0.96996 * 120.00368 * 359.97438 * 14 12 2 31 31 H 1.09004 * 109.47368 * 60.00227 * 17 15 14 32 32 H 1.09001 * 109.47372 * 300.00383 * 17 15 14 33 33 H 1.09002 * 109.47398 * 180.02562 * 18 17 15 34 34 H 1.09001 * 109.47194 * 300.00476 * 18 17 15 35 35 H 1.09001 * 109.47066 * 60.00169 * 21 19 18 36 36 H 1.08996 * 109.47747 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.47103 * 300.00247 * 21 19 18 38 38 H 1.08992 * 109.47063 * 180.02562 * 24 22 19 39 39 H 1.08996 * 109.47407 * 300.00489 * 24 22 19 40 40 H 1.09004 * 109.46733 * 59.99806 * 24 22 19 41 41 H 1.09002 * 109.47045 * 180.02562 * 25 22 19 42 42 H 1.09001 * 109.47375 * 59.99966 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3225 -1.1192 -4.0081 9 1 1.8281 -2.5195 -4.0083 10 1 1.8278 -0.4188 -5.2205 11 1 3.8075 -1.1186 -4.0079 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1957 -0.9404 3.6506 16 1 3.1950 -1.3321 3.4612 17 6 1.2522 -2.0947 3.9947 18 6 1.7623 -2.8153 5.2442 19 6 1.8131 -1.8318 6.4151 20 1 0.8137 -1.4401 6.6042 21 6 2.3238 -2.5522 7.6645 22 6 2.7566 -0.6775 6.0711 23 1 2.7924 0.0234 6.9051 24 6 4.1595 -1.2273 5.8057 25 6 2.2464 0.0431 4.8216 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.7094 1.1620 -3.4843 30 1 1.1494 0.5387 2.5436 31 1 1.2156 -2.7952 3.1603 32 1 0.2528 -1.7029 4.1841 33 1 1.0904 -3.6379 5.4891 34 1 2.7618 -3.2070 5.0552 35 1 3.3233 -2.9436 7.4752 36 1 2.3604 -1.8515 8.4986 37 1 1.6520 -3.3748 7.9098 38 1 4.8317 -0.4050 5.5611 39 1 4.5230 -1.7407 6.6959 40 1 4.1233 -1.9280 4.9716 41 1 2.9188 0.8652 4.5762 42 1 1.2469 0.4348 5.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597499172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:35 Heat of formation + Delta-G solvation = -75.857145 kcal Electronic energy + Delta-G solvation = -19591.949716 eV Core-core repulsion = 16763.327338 eV Total energy + Delta-G solvation = -2828.622379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89251 -38.17968 -34.28023 -33.65914 -31.73537 -31.19678 -29.88502 -27.35133 -25.40453 -25.07653 -22.61234 -22.33540 -20.93173 -19.39092 -18.34818 -16.56984 -16.07501 -15.52339 -15.15523 -14.49902 -14.23863 -14.07742 -14.02961 -13.53403 -13.15875 -12.78462 -12.63072 -12.36690 -12.28881 -12.00998 -11.59011 -11.54343 -11.26510 -11.05364 -10.95552 -10.77258 -10.69329 -10.62292 -10.50568 -10.25017 -10.12821 -9.93267 -9.84964 -8.93591 -8.52256 -8.33387 -8.24543 -5.98942 -4.01801 3.38890 3.40979 3.46726 3.81730 3.96945 4.50698 4.61691 4.64187 4.81510 5.08571 5.19665 5.32062 5.34545 5.36065 5.40329 5.53646 5.57476 5.60697 5.74563 5.81054 5.86661 5.90067 5.96729 6.01587 6.15010 6.20625 6.26224 6.32789 6.36809 6.51677 6.62179 6.67432 6.88180 6.98501 7.24228 7.53194 7.80527 8.04395 8.22031 8.54115 9.07057 9.34262 9.63716 11.08705 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.044022 B = 0.004508 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.891242 B = 6209.951411 C = 6335.409881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.548 6.548 14 N -0.744 5.744 15 C 0.144 3.856 16 H 0.085 0.915 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.088 4.088 20 H 0.068 0.932 21 C -0.149 4.149 22 C -0.080 4.080 23 H 0.069 0.931 24 C -0.156 4.156 25 C -0.122 4.122 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.011 0.989 29 H 0.261 0.739 30 H 0.394 0.606 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -1.509 18.610 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.424 6.424 14 N -0.397 5.397 15 C 0.039 3.961 16 H 0.103 0.897 17 C -0.168 4.168 18 C -0.150 4.150 19 C -0.107 4.107 20 H 0.087 0.913 21 C -0.206 4.206 22 C -0.099 4.099 23 H 0.087 0.913 24 C -0.213 4.213 25 C -0.160 4.160 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.227 0.773 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.737 -2.121 18.353 18.490 hybrid contribution -0.076 0.014 -0.776 0.779 sum 0.661 -2.107 17.577 17.716 Atomic orbital electron populations 1.21727 0.96622 0.99716 1.00823 1.18869 0.94092 0.96806 0.89555 0.93145 1.21116 1.30857 1.12750 0.89059 0.90884 1.24947 0.95163 0.95082 0.99074 1.69862 1.37221 1.23117 1.23553 0.86520 0.79275 0.79718 0.81696 1.20228 1.21408 1.20222 1.21923 0.78305 0.84245 0.84572 1.90515 1.38101 1.26952 1.86810 1.46369 1.55305 1.32393 1.05611 1.20839 0.98607 0.92148 0.84525 0.89745 1.21924 0.99045 0.98127 0.97671 1.21594 1.01672 0.97567 0.94209 1.21170 0.98973 0.95622 0.94904 0.91342 1.21886 1.01377 1.00127 0.97194 1.21050 0.95255 0.96557 0.97047 0.91257 1.22029 0.95955 1.01401 1.01951 1.21838 1.01573 0.98112 0.94436 0.88946 0.95098 0.96968 0.92974 0.77310 0.91335 0.92224 0.92189 0.91551 0.92340 0.92966 0.92942 0.92825 0.92596 0.91679 0.91435 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.40 8.37 -34.44 -0.29 -14.69 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 12.02 7.11 -10.99 -0.08 11.94 16 13 O -0.55 -14.45 15.12 5.55 0.08 -14.37 16 14 N -0.74 -13.15 4.97 -53.81 -0.27 -13.42 16 15 C 0.14 2.17 2.18 -67.93 -0.15 2.02 16 16 H 0.08 1.46 5.87 -51.93 -0.30 1.15 16 17 C -0.13 -1.83 5.49 -26.73 -0.15 -1.98 16 18 C -0.11 -1.29 4.93 -26.73 -0.13 -1.42 16 19 C -0.09 -0.86 2.50 -90.62 -0.23 -1.08 16 20 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 21 C -0.15 -1.23 8.84 37.15 0.33 -0.90 16 22 C -0.08 -0.80 2.72 -90.62 -0.25 -1.04 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 24 C -0.16 -1.61 8.15 37.16 0.30 -1.30 16 25 C -0.12 -1.40 4.92 -26.73 -0.13 -1.54 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.08 8.02 -40.82 -0.33 5.76 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 35 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 40 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -30.69 318.67 -7.70 -38.40 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.15 Total: 3.11 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.78 Total: -10.73 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.36 Total: -38.31 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.69 -7.70 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597499172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.458 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds