Wall clock time and date at job start Mon Mar 30 2020 07:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47367 * 2 1 4 4 C 1.50706 * 109.47184 * 120.00036 * 2 1 3 5 5 H 1.08002 * 119.99967 * 119.99467 * 4 2 1 6 6 C 1.37878 * 119.99898 * 299.99845 * 4 2 1 7 7 N 1.31514 * 119.99838 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99925 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47104 * 90.00049 * 8 6 4 10 10 H 1.48502 * 109.47496 * 210.00083 * 8 6 4 11 11 H 1.48500 * 109.47302 * 330.00201 * 8 6 4 12 12 C 1.50706 * 109.47280 * 239.99814 * 2 1 3 13 13 O 1.21279 * 119.99863 * 274.72525 * 12 2 1 14 14 N 1.34779 * 120.00027 * 94.72066 * 12 2 1 15 15 C 1.46927 * 120.62661 * 354.62159 * 14 12 2 16 16 C 1.53199 * 108.77296 * 233.58751 * 15 14 12 17 17 C 1.53039 * 109.31166 * 305.36528 * 16 15 14 18 18 H 1.09003 * 109.45902 * 301.34679 * 17 16 15 19 19 C 1.52997 * 109.45235 * 181.38194 * 17 16 15 20 20 C 1.53038 * 109.53798 * 61.36285 * 17 16 15 21 21 C 1.53001 * 109.49744 * 58.59015 * 20 17 16 22 22 C 1.53005 * 109.49869 * 178.64977 * 20 17 16 23 23 C 1.46919 * 120.63229 * 174.59802 * 14 12 2 24 24 H 1.09003 * 109.47044 * 305.07390 * 1 2 3 25 25 H 1.09005 * 109.47053 * 65.06974 * 1 2 3 26 26 H 1.08999 * 109.47294 * 185.06863 * 1 2 3 27 27 H 0.96996 * 119.99791 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.59067 * 353.37215 * 15 14 12 29 29 H 1.09000 * 109.58572 * 113.65648 * 15 14 12 30 30 H 1.08998 * 109.49684 * 185.42049 * 16 15 14 31 31 H 1.08995 * 109.49852 * 65.31396 * 16 15 14 32 32 H 1.09003 * 109.46519 * 299.96759 * 19 17 16 33 33 H 1.08992 * 109.47305 * 59.96315 * 19 17 16 34 34 H 1.08998 * 109.47470 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.46986 * 59.99239 * 21 20 17 36 36 H 1.08996 * 109.47570 * 180.02562 * 21 20 17 37 37 H 1.09007 * 109.47039 * 300.00171 * 21 20 17 38 38 H 1.09004 * 109.47106 * 60.00636 * 22 20 17 39 39 H 1.09002 * 109.47157 * 180.02562 * 22 20 17 40 40 H 1.08997 * 109.46889 * 300.00241 * 22 20 17 41 41 H 1.09002 * 109.58675 * 6.62622 * 23 14 12 42 42 H 1.08999 * 109.58925 * 246.20297 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9493 5.1121 11 1 2.4858 -2.5662 3.7119 12 6 2.0323 -0.7105 -1.2305 13 8 2.1529 -1.9172 -1.2271 14 7 2.3476 -0.0048 -2.3346 15 6 2.0967 1.4417 -2.3954 16 6 1.2689 1.7462 -3.6480 17 6 1.9838 1.1800 -4.8771 18 1 2.9768 1.6225 -4.9555 19 6 1.1770 1.5124 -6.1339 20 6 2.1118 -0.3388 -4.7402 21 6 0.7200 -0.9576 -4.5952 22 6 2.7964 -0.9079 -5.9846 23 6 2.9490 -0.6671 -3.5000 24 1 -0.3633 0.5905 0.8411 25 1 -0.3633 0.4332 -0.9320 26 1 -0.3634 -1.0236 0.0908 27 1 0.7088 1.1613 3.4843 28 1 1.5459 1.7547 -1.5085 29 1 3.0459 1.9754 -2.4434 30 1 1.1575 2.8250 -3.7570 31 1 0.2854 1.2858 -3.5550 32 1 0.1839 1.0700 -6.0555 33 1 1.0862 2.5941 -6.2318 34 1 1.6860 1.1097 -7.0095 35 1 0.1237 -0.7213 -5.4765 36 1 0.8116 -2.0393 -4.4972 37 1 0.2330 -0.5528 -3.7079 38 1 3.7883 -0.4677 -6.0869 39 1 2.8869 -1.9897 -5.8868 40 1 2.2013 -0.6717 -6.8667 41 1 2.9605 -1.7455 -3.3418 42 1 3.9676 -0.3055 -3.6406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:35 Heat of formation + Delta-G solvation = -57.276062 kcal Electronic energy + Delta-G solvation = -20307.114725 eV Core-core repulsion = 17479.298082 eV Total energy + Delta-G solvation = -2827.816643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13303 -37.79560 -34.17630 -33.67607 -32.36429 -30.40516 -28.36409 -27.19708 -26.52341 -25.16168 -23.34495 -21.99508 -21.72418 -18.64639 -17.83985 -16.42331 -15.99297 -15.36502 -15.04677 -14.68037 -14.37520 -14.12191 -13.61436 -13.18481 -13.00272 -12.86713 -12.59255 -12.18543 -12.00253 -11.85177 -11.72397 -11.51018 -11.31230 -11.11963 -10.94844 -10.88261 -10.68297 -10.62996 -10.46226 -10.22845 -10.09889 -10.02095 -10.00752 -8.95751 -8.53705 -8.24546 -7.93087 -6.02827 -4.05618 3.33549 3.39411 3.46360 3.74640 3.78075 4.47604 4.69160 4.79840 4.83206 5.14682 5.30245 5.33497 5.41086 5.50548 5.54125 5.62682 5.70919 5.74284 5.87063 5.90578 5.95122 6.00887 6.04001 6.07918 6.16084 6.18797 6.23383 6.32883 6.39442 6.51722 6.64858 6.71040 6.89103 7.03620 7.20569 7.49921 7.78446 7.99913 8.15144 8.42761 8.98377 9.29130 9.58859 11.04873 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.038760 B = 0.005760 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.222998 B = 4860.202331 C = 5171.046888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.499 4.499 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.526 3.474 13 O -0.551 6.551 14 N -0.624 5.624 15 C 0.108 3.892 16 C -0.132 4.132 17 C -0.080 4.080 18 H 0.068 0.932 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.139 4.139 22 C -0.140 4.140 23 C 0.120 3.880 24 H 0.090 0.910 25 H 0.009 0.991 26 H 0.035 0.965 27 H 0.261 0.739 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 3.700 -15.936 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.537 4.537 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.317 3.683 13 O -0.427 6.427 14 N -0.359 5.359 15 C -0.015 4.015 16 C -0.170 4.170 17 C -0.098 4.098 18 H 0.086 0.914 19 C -0.206 4.206 20 C -0.074 4.074 21 C -0.196 4.196 22 C -0.198 4.198 23 C -0.003 4.003 24 H 0.108 0.892 25 H 0.028 0.972 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.713 3.140 -15.757 16.083 hybrid contribution 0.345 -0.297 0.780 0.903 sum 1.058 2.843 -14.977 15.281 Atomic orbital electron populations 1.21670 0.96220 1.00870 0.99674 1.18908 0.94266 0.96566 0.89285 0.93562 1.21023 1.31201 1.12315 0.89176 0.91638 1.24921 0.95064 0.95060 0.99016 1.69875 1.36930 1.23062 1.23540 0.86469 0.78427 0.80310 0.82133 1.20682 1.21200 1.19740 1.21982 0.74652 0.87732 0.83893 1.90513 1.53682 1.15219 1.83308 1.48288 1.64084 1.08399 1.15111 1.21703 0.99441 0.81320 0.99083 1.22053 0.99943 1.00571 0.94451 1.21105 0.99262 0.94664 0.94777 0.91403 1.21932 1.00400 1.00862 0.97376 1.20891 0.96429 0.95034 0.95085 1.21881 0.95660 1.00448 1.01574 1.21862 1.00100 1.00804 0.97005 1.21485 0.94806 0.99439 0.84559 0.89160 0.97156 0.94572 0.92940 0.88428 0.92404 0.91207 0.91115 0.92463 0.93027 0.92625 0.92964 0.92950 0.91968 0.92781 0.92637 0.92295 0.89495 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.77 37.16 0.33 -2.72 16 2 C 0.03 0.78 1.84 -92.92 -0.17 0.61 16 3 H 0.05 1.17 6.19 -51.93 -0.32 0.85 16 4 C -0.50 -14.30 8.32 -34.44 -0.29 -14.58 16 5 H 0.07 1.98 7.25 -52.49 -0.38 1.60 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.15 11.37 55.43 0.63 -24.52 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.53 12.39 6.68 -10.98 -0.07 12.32 16 13 O -0.55 -14.74 15.52 5.56 0.09 -14.65 16 14 N -0.62 -11.57 2.41 -172.77 -0.42 -11.99 16 15 C 0.11 1.68 6.15 -3.71 -0.02 1.65 16 16 C -0.13 -1.66 5.02 -26.61 -0.13 -1.79 16 17 C -0.08 -0.90 2.00 -90.58 -0.18 -1.08 16 18 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -1.41 8.49 37.16 0.32 -1.09 16 20 C -0.07 -0.93 0.55 -154.39 -0.08 -1.01 16 21 C -0.14 -1.89 7.66 37.16 0.28 -1.61 16 22 C -0.14 -1.46 8.10 37.16 0.30 -1.16 16 23 C 0.12 1.92 5.12 -3.72 -0.02 1.90 16 24 H 0.09 2.32 6.22 -51.93 -0.32 2.00 16 25 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.10 1.67 5.51 -51.93 -0.29 1.39 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 32 H 0.06 0.56 6.47 -51.93 -0.34 0.22 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.48 6.40 -51.93 -0.33 0.15 16 35 H 0.05 0.61 6.47 -51.93 -0.34 0.27 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.98 5.97 -51.93 -0.31 0.67 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.54 6.40 -51.93 -0.33 0.21 16 41 H 0.09 1.57 7.00 -51.93 -0.36 1.21 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -30.60 314.08 -6.84 -37.43 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.01 Total: -0.91 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 0.16 Total: -6.98 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.21 Total: -36.50 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.60 -6.84 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.842 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds