Wall clock time and date at job start Mon Mar 30 2020 07:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47367 * 2 1 4 4 C 1.50706 * 109.47184 * 120.00036 * 2 1 3 5 5 H 1.08002 * 119.99967 * 119.99467 * 4 2 1 6 6 C 1.37878 * 119.99898 * 299.99845 * 4 2 1 7 7 N 1.31514 * 119.99838 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99925 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47104 * 90.00049 * 8 6 4 10 10 H 1.48502 * 109.47496 * 210.00083 * 8 6 4 11 11 H 1.48500 * 109.47302 * 330.00201 * 8 6 4 12 12 C 1.50706 * 109.47280 * 239.99814 * 2 1 3 13 13 O 1.21279 * 119.99863 * 274.72525 * 12 2 1 14 14 N 1.34779 * 120.00027 * 94.72066 * 12 2 1 15 15 C 1.46927 * 120.62661 * 354.62159 * 14 12 2 16 16 C 1.53199 * 108.77296 * 233.58751 * 15 14 12 17 17 C 1.53039 * 109.31166 * 305.36528 * 16 15 14 18 18 H 1.09003 * 109.45902 * 301.34679 * 17 16 15 19 19 C 1.52997 * 109.45235 * 181.38194 * 17 16 15 20 20 C 1.53038 * 109.53798 * 61.36285 * 17 16 15 21 21 C 1.53001 * 109.49744 * 58.59015 * 20 17 16 22 22 C 1.53005 * 109.49869 * 178.64977 * 20 17 16 23 23 C 1.46919 * 120.63229 * 174.59802 * 14 12 2 24 24 H 1.09003 * 109.47044 * 305.07390 * 1 2 3 25 25 H 1.09005 * 109.47053 * 65.06974 * 1 2 3 26 26 H 1.08999 * 109.47294 * 185.06863 * 1 2 3 27 27 H 0.96996 * 119.99791 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.59067 * 353.37215 * 15 14 12 29 29 H 1.09000 * 109.58572 * 113.65648 * 15 14 12 30 30 H 1.08998 * 109.49684 * 185.42049 * 16 15 14 31 31 H 1.08995 * 109.49852 * 65.31396 * 16 15 14 32 32 H 1.09003 * 109.46519 * 299.96759 * 19 17 16 33 33 H 1.08992 * 109.47305 * 59.96315 * 19 17 16 34 34 H 1.08998 * 109.47470 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.46986 * 59.99239 * 21 20 17 36 36 H 1.08996 * 109.47570 * 180.02562 * 21 20 17 37 37 H 1.09007 * 109.47039 * 300.00171 * 21 20 17 38 38 H 1.09004 * 109.47106 * 60.00636 * 22 20 17 39 39 H 1.09002 * 109.47157 * 180.02562 * 22 20 17 40 40 H 1.08997 * 109.46889 * 300.00241 * 22 20 17 41 41 H 1.09002 * 109.58675 * 6.62622 * 23 14 12 42 42 H 1.08999 * 109.58925 * 246.20297 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9493 5.1121 11 1 2.4858 -2.5662 3.7119 12 6 2.0323 -0.7105 -1.2305 13 8 2.1529 -1.9172 -1.2271 14 7 2.3476 -0.0048 -2.3346 15 6 2.0967 1.4417 -2.3954 16 6 1.2689 1.7462 -3.6480 17 6 1.9838 1.1800 -4.8771 18 1 2.9768 1.6225 -4.9555 19 6 1.1770 1.5124 -6.1339 20 6 2.1118 -0.3388 -4.7402 21 6 0.7200 -0.9576 -4.5952 22 6 2.7964 -0.9079 -5.9846 23 6 2.9490 -0.6671 -3.5000 24 1 -0.3633 0.5905 0.8411 25 1 -0.3633 0.4332 -0.9320 26 1 -0.3634 -1.0236 0.0908 27 1 0.7088 1.1613 3.4843 28 1 1.5459 1.7547 -1.5085 29 1 3.0459 1.9754 -2.4434 30 1 1.1575 2.8250 -3.7570 31 1 0.2854 1.2858 -3.5550 32 1 0.1839 1.0700 -6.0555 33 1 1.0862 2.5941 -6.2318 34 1 1.6860 1.1097 -7.0095 35 1 0.1237 -0.7213 -5.4765 36 1 0.8116 -2.0393 -4.4972 37 1 0.2330 -0.5528 -3.7079 38 1 3.7883 -0.4677 -6.0869 39 1 2.8869 -1.9897 -5.8868 40 1 2.2013 -0.6717 -6.8667 41 1 2.9605 -1.7455 -3.3418 42 1 3.9676 -0.3055 -3.6406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507086.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:35 Heat of formation + Delta-G solvation = -74.635794 kcal Electronic energy + Delta-G solvation = -20307.867499 eV Core-core repulsion = 17479.298082 eV Total energy + Delta-G solvation = -2828.569417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.50342 -39.35008 -35.91473 -35.44190 -33.47790 -32.42728 -29.42523 -28.21298 -27.81572 -27.29901 -24.73035 -23.47945 -22.98407 -20.20540 -19.00606 -18.43455 -17.79811 -16.97979 -16.38982 -16.09974 -15.94599 -15.09670 -15.03629 -14.70905 -14.45728 -14.39953 -13.96658 -13.51636 -13.40311 -12.99865 -12.96837 -12.79344 -12.77337 -12.64637 -12.61607 -12.45842 -12.22432 -12.11228 -12.03653 -11.92368 -11.53264 -11.19667 -11.05092 -11.00563 -10.60877 -10.18712 -9.43226 -8.17836 -6.28371 1.38711 1.40039 1.51635 1.92312 2.23010 2.45680 3.11658 3.65089 3.80449 3.82165 4.09790 4.15748 4.25673 4.41345 4.50632 4.57045 4.65881 4.71104 4.79406 4.82008 4.86637 4.88404 4.93340 4.95186 5.01765 5.04403 5.09787 5.13135 5.17925 5.21523 5.29736 5.40040 5.44895 5.56691 5.65084 5.66947 5.78940 5.90531 6.16933 6.61810 6.76520 7.36286 7.51343 8.88411 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.038760 B = 0.005760 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.222998 B = 4860.202331 C = 5171.046888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.029 3.971 3 H 0.045 0.955 4 C -0.530 4.530 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.522 3.478 13 O -0.596 6.596 14 N -0.614 5.614 15 C 0.100 3.900 16 C -0.126 4.126 17 C -0.075 4.075 18 H 0.080 0.920 19 C -0.144 4.144 20 C -0.068 4.068 21 C -0.136 4.136 22 C -0.135 4.135 23 C 0.115 3.885 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.015 0.985 27 H 0.266 0.734 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 5.280 -17.756 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.008 3.992 3 H 0.063 0.937 4 C -0.568 4.568 5 H 0.056 0.944 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.313 3.687 13 O -0.476 6.476 14 N -0.347 5.347 15 C -0.022 4.022 16 C -0.164 4.164 17 C -0.094 4.094 18 H 0.098 0.902 19 C -0.201 4.201 20 C -0.069 4.069 21 C -0.193 4.193 22 C -0.193 4.193 23 C -0.007 4.007 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.055 4.774 -17.617 18.283 hybrid contribution 0.249 -0.747 1.323 1.540 sum 1.305 4.027 -16.294 16.835 Atomic orbital electron populations 1.21466 0.95634 0.99405 1.00450 1.18824 0.94779 0.96168 0.89456 0.93691 1.21149 1.32080 1.12244 0.91313 0.94350 1.25575 0.95057 0.95718 1.01319 1.69941 1.36831 1.23453 1.24454 0.85589 0.78613 0.78624 0.79040 1.19504 1.19781 1.20690 1.21623 0.74984 0.87164 0.84880 1.90479 1.56002 1.16869 1.84273 1.48235 1.62415 1.09659 1.14393 1.21948 1.00857 0.79246 1.00146 1.22029 0.98726 1.02266 0.93338 1.21106 1.00188 0.93007 0.95095 0.90164 1.21890 0.99832 1.01866 0.96481 1.20875 0.95154 0.96552 0.94282 1.21858 0.96695 0.99245 1.01468 1.21834 1.00876 1.00376 0.96202 1.21723 0.96378 0.97696 0.84925 0.90730 0.94267 0.96555 0.92426 0.90363 0.90460 0.88509 0.92293 0.92854 0.91701 0.91239 0.90462 0.94695 0.94578 0.91462 0.93310 0.90320 0.92324 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.52 8.77 71.98 0.63 -4.88 16 2 C 0.03 1.51 1.84 -12.28 -0.02 1.48 16 3 H 0.05 2.34 6.19 -2.39 -0.01 2.32 16 4 C -0.53 -31.45 8.32 25.60 0.21 -31.24 16 5 H 0.04 2.43 7.25 -2.91 -0.02 2.41 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -51.30 11.37 21.45 0.24 -51.05 16 8 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 12 C 0.52 25.53 6.68 87.66 0.59 26.11 16 13 O -0.60 -33.55 15.52 -3.03 -0.05 -33.60 16 14 N -0.61 -22.90 2.41 -818.91 -1.97 -24.87 16 15 C 0.10 2.99 6.15 86.36 0.53 3.53 16 16 C -0.13 -2.83 5.02 30.67 0.15 -2.68 16 17 C -0.08 -1.44 2.00 -10.77 -0.02 -1.47 16 18 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.14 -2.10 8.49 71.98 0.61 -1.48 16 20 C -0.07 -1.58 0.55 -52.10 -0.03 -1.61 16 21 C -0.14 -3.59 7.66 71.98 0.55 -3.03 16 22 C -0.14 -2.42 8.10 71.98 0.58 -1.84 16 23 C 0.12 3.62 5.12 86.36 0.44 4.06 16 24 H 0.07 3.91 6.22 -2.39 -0.01 3.90 16 25 H 0.04 1.65 8.12 -2.38 -0.02 1.63 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.27 14.18 8.31 -92.71 -0.77 13.40 16 28 H 0.08 2.66 5.51 -2.39 -0.01 2.64 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.50 6.34 -2.39 -0.02 1.48 16 32 H 0.05 0.83 6.47 -2.39 -0.02 0.82 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.85 6.40 -2.39 -0.02 0.84 16 35 H 0.08 1.63 6.47 -2.39 -0.02 1.61 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 1.13 5.97 -2.38 -0.01 1.12 16 38 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.13 6.40 -2.39 -0.02 1.11 16 41 H 0.06 2.19 7.00 -2.39 -0.02 2.17 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -68.39 314.08 5.91 -62.47 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.98 Total: 10.99 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.68 Total: -11.29 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -1.73 Total: -75.92 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.05 Total: -33.60 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.39 5.91 -62.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507086.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.165 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds