Wall clock time and date at job start Mon Mar 30 2020 07:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47138 * 2 1 4 4 C 1.50698 * 109.47222 * 120.00036 * 2 1 3 5 5 H 1.07999 * 120.00663 * 119.99228 * 4 2 1 6 6 C 1.37879 * 119.99887 * 300.00392 * 4 2 1 7 7 N 1.31520 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00017 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47694 * 59.99526 * 8 6 4 10 10 H 1.48501 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47038 * 299.98939 * 8 6 4 12 12 C 1.50697 * 109.47179 * 239.99686 * 2 1 3 13 13 O 1.21290 * 120.00201 * 335.44216 * 12 2 1 14 14 N 1.34776 * 120.00278 * 155.43531 * 12 2 1 15 15 C 1.46930 * 120.62861 * 355.41154 * 14 12 2 16 16 C 1.53197 * 108.77286 * 126.36578 * 15 14 12 17 17 C 1.53043 * 109.31202 * 54.64224 * 16 15 14 18 18 H 1.08994 * 109.46306 * 58.65042 * 17 16 15 19 19 C 1.52997 * 109.46006 * 178.62671 * 17 16 15 20 20 C 1.53081 * 109.65445 * 298.69286 * 17 16 15 21 21 C 1.52997 * 109.39140 * 301.28290 * 20 17 16 22 22 C 1.52998 * 109.61912 * 181.17112 * 20 17 16 23 23 C 1.46925 * 120.63685 * 175.38617 * 14 12 2 24 24 H 1.09006 * 109.47441 * 185.16810 * 1 2 3 25 25 H 1.08996 * 109.47270 * 305.16975 * 1 2 3 26 26 H 1.09000 * 109.47017 * 65.16634 * 1 2 3 27 27 H 0.96991 * 119.99873 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.59044 * 246.15663 * 15 14 12 29 29 H 1.09005 * 109.58297 * 6.58537 * 15 14 12 30 30 H 1.09007 * 109.49545 * 174.58624 * 16 15 14 31 31 H 1.08997 * 109.50260 * 294.64953 * 16 15 14 32 32 H 1.08999 * 109.47243 * 59.99200 * 19 17 16 33 33 H 1.08998 * 109.47405 * 179.97438 * 19 17 16 34 34 H 1.09000 * 109.47047 * 299.99992 * 19 17 16 35 35 H 1.08995 * 109.47210 * 179.75590 * 21 20 17 36 36 H 1.09007 * 109.46668 * 299.74992 * 21 20 17 37 37 H 1.08996 * 109.47511 * 59.74644 * 21 20 17 38 38 H 1.09001 * 109.47164 * 300.10606 * 22 20 17 39 39 H 1.08998 * 109.47062 * 60.11294 * 22 20 17 40 40 H 1.09007 * 109.46551 * 180.10922 * 22 20 17 41 41 H 1.09005 * 109.58622 * 353.42281 * 23 14 12 42 42 H 1.08996 * 109.58679 * 113.69856 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8278 -2.5198 4.0082 12 6 2.0323 -0.7105 -1.2304 13 8 1.3338 -1.5337 -1.7831 14 7 3.2578 -0.4310 -1.7168 15 6 4.0753 0.6337 -1.1196 16 6 5.4445 0.0550 -0.7491 17 6 6.0687 -0.5988 -1.9841 18 1 6.1665 0.1425 -2.7771 19 6 7.4512 -1.1479 -1.6264 20 6 5.1751 -1.7439 -2.4676 21 6 5.0117 -2.7697 -1.3444 22 6 5.8143 -2.4155 -3.6847 23 6 3.8019 -1.1857 -2.8540 24 1 -0.3634 -1.0235 0.0926 25 1 -0.3633 0.5919 0.8400 26 1 -0.3633 0.4316 -0.9326 27 1 0.7094 1.1617 3.4843 28 1 4.2031 1.4431 -1.8384 29 1 3.5840 1.0124 -0.2233 30 1 6.0938 0.8553 -0.3939 31 1 5.3238 -0.6911 0.0363 32 1 7.3536 -1.8889 -0.8330 33 1 7.8957 -1.6140 -2.5057 34 1 8.0889 -0.3324 -1.2854 35 1 4.3721 -3.5836 -1.6858 36 1 5.9892 -3.1665 -1.0698 37 1 4.5577 -2.2900 -0.4773 38 1 5.9316 -1.6835 -4.4838 39 1 6.7913 -2.8125 -3.4092 40 1 5.1752 -3.2291 -4.0280 41 1 3.1301 -2.0075 -3.1022 42 1 3.9049 -0.5253 -3.7150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:40 Heat of formation + Delta-G solvation = -59.425579 kcal Electronic energy + Delta-G solvation = -20548.790756 eV Core-core repulsion = 17720.880903 eV Total energy + Delta-G solvation = -2827.909853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02955 -37.77417 -34.11497 -33.68511 -32.26365 -30.34060 -28.23518 -27.09537 -26.57746 -25.11873 -23.27039 -21.86436 -21.65026 -18.39907 -17.79166 -16.39736 -16.22293 -15.35884 -14.97991 -14.54503 -14.39108 -14.01397 -13.56898 -13.20893 -12.96777 -12.73645 -12.44387 -11.99953 -11.87373 -11.77829 -11.60924 -11.42521 -11.32092 -11.01666 -10.98120 -10.82704 -10.73265 -10.41167 -10.38470 -10.24544 -10.14266 -9.92007 -9.82900 -9.01166 -8.58330 -8.29549 -7.87178 -6.10103 -4.17340 3.27286 3.32311 3.34727 3.74014 3.88908 4.39709 4.79079 4.92262 4.94421 5.21715 5.27693 5.43661 5.51865 5.63584 5.65924 5.72430 5.82040 5.84000 5.96044 6.02068 6.03163 6.12695 6.14768 6.17435 6.27037 6.30860 6.39770 6.51193 6.51666 6.61003 6.83458 6.87568 7.03354 7.12867 7.34094 7.59211 7.77930 7.96591 8.19543 8.35520 8.82416 9.28328 9.48041 10.96298 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.007861 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.334172 B = 3560.844447 C = 4137.514647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.529 3.471 13 O -0.568 6.568 14 N -0.616 5.616 15 C 0.110 3.890 16 C -0.131 4.131 17 C -0.079 4.079 18 H 0.065 0.935 19 C -0.148 4.148 20 C -0.073 4.073 21 C -0.142 4.142 22 C -0.139 4.139 23 C 0.121 3.879 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.009 0.991 27 H 0.263 0.737 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 -0.837 -7.921 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.322 3.678 13 O -0.446 6.446 14 N -0.350 5.350 15 C -0.013 4.013 16 C -0.169 4.169 17 C -0.098 4.098 18 H 0.083 0.917 19 C -0.206 4.206 20 C -0.074 4.074 21 C -0.199 4.199 22 C -0.197 4.197 23 C -0.002 4.002 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.005 -1.146 -8.064 13.691 hybrid contribution 0.438 -0.434 0.843 1.044 sum 11.443 -1.580 -7.221 13.623 Atomic orbital electron populations 1.21578 0.96274 1.00839 0.99168 1.18918 0.94562 0.96285 0.89269 0.93578 1.20676 1.31965 1.12577 0.89189 0.92548 1.24890 0.94806 0.94898 0.98867 1.69885 1.36063 1.22603 1.23808 0.86591 0.79176 0.79908 0.81997 1.20128 1.21157 1.20169 1.21934 0.79256 0.81773 0.84859 1.90516 1.56578 1.36224 1.61320 1.48122 1.17218 1.36515 1.33123 1.21727 0.91311 0.88901 0.99390 1.22013 0.96199 1.00773 0.97904 1.21117 0.94353 0.96523 0.97799 0.91669 1.21930 0.96335 1.00935 1.01358 1.20886 0.95117 0.95567 0.95820 1.21922 1.00878 0.98179 0.98942 1.21854 1.00539 1.00256 0.97040 1.21467 0.93804 0.96341 0.88593 0.94364 0.89852 0.97228 0.92668 0.93040 0.87421 0.91457 0.90514 0.92393 0.92775 0.93076 0.93179 0.93023 0.91205 0.92888 0.92307 0.92729 0.89702 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.33 37.16 0.31 -2.78 16 2 C 0.03 0.77 1.81 -92.93 -0.17 0.60 16 3 H 0.05 1.16 6.30 -51.93 -0.33 0.83 16 4 C -0.51 -13.47 8.36 -34.44 -0.29 -13.76 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.24 11.38 55.43 0.63 -23.61 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.53 12.50 6.74 -10.99 -0.07 12.42 16 13 O -0.57 -14.90 15.63 5.55 0.09 -14.81 16 14 N -0.62 -11.83 2.42 -172.76 -0.42 -12.24 16 15 C 0.11 1.84 6.27 -3.71 -0.02 1.82 16 16 C -0.13 -1.90 5.02 -26.61 -0.13 -2.03 16 17 C -0.08 -1.00 2.00 -90.56 -0.18 -1.18 16 18 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.15 -1.61 8.49 37.16 0.32 -1.29 16 20 C -0.07 -1.00 0.55 -154.37 -0.08 -1.08 16 21 C -0.14 -2.17 7.67 37.16 0.28 -1.89 16 22 C -0.14 -1.55 8.10 37.16 0.30 -1.25 16 23 C 0.12 2.00 5.09 -3.71 -0.02 1.98 16 24 H 0.04 1.01 8.04 -51.93 -0.42 0.59 16 25 H 0.08 2.22 6.23 -51.93 -0.32 1.90 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.11 2.06 5.35 -51.93 -0.28 1.78 16 30 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 31 H 0.08 1.27 6.34 -51.93 -0.33 0.94 16 32 H 0.06 0.66 6.47 -51.93 -0.34 0.32 16 33 H 0.05 0.53 6.40 -51.93 -0.33 0.19 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.69 6.47 -51.92 -0.34 0.35 16 37 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.59 6.42 -51.93 -0.33 0.26 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.56 7.03 -51.93 -0.37 1.20 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -29.08 314.36 -6.87 -35.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.03 Total: 0.96 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 0.14 Total: -6.73 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.21 Total: -35.85 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.09 Total: -14.81 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.08 -6.87 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.472 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds