Wall clock time and date at job start Mon Mar 30 2020 07:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47138 * 2 1 4 4 C 1.50698 * 109.47222 * 120.00036 * 2 1 3 5 5 H 1.07999 * 120.00663 * 119.99228 * 4 2 1 6 6 C 1.37879 * 119.99887 * 300.00392 * 4 2 1 7 7 N 1.31520 * 120.00020 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00017 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47694 * 59.99526 * 8 6 4 10 10 H 1.48501 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47038 * 299.98939 * 8 6 4 12 12 C 1.50697 * 109.47179 * 239.99686 * 2 1 3 13 13 O 1.21290 * 120.00201 * 335.44216 * 12 2 1 14 14 N 1.34776 * 120.00278 * 155.43531 * 12 2 1 15 15 C 1.46930 * 120.62861 * 355.41154 * 14 12 2 16 16 C 1.53197 * 108.77286 * 126.36578 * 15 14 12 17 17 C 1.53043 * 109.31202 * 54.64224 * 16 15 14 18 18 H 1.08994 * 109.46306 * 58.65042 * 17 16 15 19 19 C 1.52997 * 109.46006 * 178.62671 * 17 16 15 20 20 C 1.53081 * 109.65445 * 298.69286 * 17 16 15 21 21 C 1.52997 * 109.39140 * 301.28290 * 20 17 16 22 22 C 1.52998 * 109.61912 * 181.17112 * 20 17 16 23 23 C 1.46925 * 120.63685 * 175.38617 * 14 12 2 24 24 H 1.09006 * 109.47441 * 185.16810 * 1 2 3 25 25 H 1.08996 * 109.47270 * 305.16975 * 1 2 3 26 26 H 1.09000 * 109.47017 * 65.16634 * 1 2 3 27 27 H 0.96991 * 119.99873 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.59044 * 246.15663 * 15 14 12 29 29 H 1.09005 * 109.58297 * 6.58537 * 15 14 12 30 30 H 1.09007 * 109.49545 * 174.58624 * 16 15 14 31 31 H 1.08997 * 109.50260 * 294.64953 * 16 15 14 32 32 H 1.08999 * 109.47243 * 59.99200 * 19 17 16 33 33 H 1.08998 * 109.47405 * 179.97438 * 19 17 16 34 34 H 1.09000 * 109.47047 * 299.99992 * 19 17 16 35 35 H 1.08995 * 109.47210 * 179.75590 * 21 20 17 36 36 H 1.09007 * 109.46668 * 299.74992 * 21 20 17 37 37 H 1.08996 * 109.47511 * 59.74644 * 21 20 17 38 38 H 1.09001 * 109.47164 * 300.10606 * 22 20 17 39 39 H 1.08998 * 109.47062 * 60.11294 * 22 20 17 40 40 H 1.09007 * 109.46551 * 180.10922 * 22 20 17 41 41 H 1.09005 * 109.58622 * 353.42281 * 23 14 12 42 42 H 1.08996 * 109.58679 * 113.69856 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1195 4.0079 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2204 11 1 1.8278 -2.5198 4.0082 12 6 2.0323 -0.7105 -1.2304 13 8 1.3338 -1.5337 -1.7831 14 7 3.2578 -0.4310 -1.7168 15 6 4.0753 0.6337 -1.1196 16 6 5.4445 0.0550 -0.7491 17 6 6.0687 -0.5988 -1.9841 18 1 6.1665 0.1425 -2.7771 19 6 7.4512 -1.1479 -1.6264 20 6 5.1751 -1.7439 -2.4676 21 6 5.0117 -2.7697 -1.3444 22 6 5.8143 -2.4155 -3.6847 23 6 3.8019 -1.1857 -2.8540 24 1 -0.3634 -1.0235 0.0926 25 1 -0.3633 0.5919 0.8400 26 1 -0.3633 0.4316 -0.9326 27 1 0.7094 1.1617 3.4843 28 1 4.2031 1.4431 -1.8384 29 1 3.5840 1.0124 -0.2233 30 1 6.0938 0.8553 -0.3939 31 1 5.3238 -0.6911 0.0363 32 1 7.3536 -1.8889 -0.8330 33 1 7.8957 -1.6140 -2.5057 34 1 8.0889 -0.3324 -1.2854 35 1 4.3721 -3.5836 -1.6858 36 1 5.9892 -3.1665 -1.0698 37 1 4.5577 -2.2900 -0.4773 38 1 5.9316 -1.6835 -4.4838 39 1 6.7913 -2.8125 -3.4092 40 1 5.1752 -3.2291 -4.0280 41 1 3.1301 -2.0075 -3.1022 42 1 3.9049 -0.5253 -3.7150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:39 Heat of formation + Delta-G solvation = -75.154760 kcal Electronic energy + Delta-G solvation = -20549.472825 eV Core-core repulsion = 17720.880903 eV Total energy + Delta-G solvation = -2828.591921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.46800 -39.36360 -35.92366 -35.38779 -33.45834 -32.36579 -29.39973 -28.24061 -27.95099 -27.17601 -24.72221 -23.40524 -22.97048 -20.03307 -19.06225 -18.37574 -18.03560 -16.96281 -16.37549 -16.08435 -15.88705 -15.12758 -15.06088 -14.82580 -14.39507 -14.04994 -13.94471 -13.59303 -13.31830 -13.04778 -12.95118 -12.84152 -12.80620 -12.67054 -12.57159 -12.36889 -12.19841 -12.10209 -12.00723 -11.86796 -11.53543 -11.18218 -11.03660 -11.01123 -10.60508 -10.21453 -9.40811 -8.16730 -6.30545 1.40411 1.42891 1.49714 1.90968 2.31698 2.44223 3.12683 3.66410 3.82384 3.85278 4.14015 4.17039 4.29270 4.44235 4.52083 4.59355 4.68125 4.74445 4.79500 4.83998 4.88249 4.92700 4.95581 4.97243 5.02185 5.10758 5.14179 5.14929 5.21557 5.23791 5.32892 5.42064 5.48047 5.57920 5.63662 5.67536 5.84896 5.87388 6.14633 6.61918 6.71583 7.34934 7.49189 8.89264 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.007861 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.334172 B = 3560.844447 C = 4137.514647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.029 3.971 3 H 0.044 0.956 4 C -0.518 4.518 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.525 3.475 13 O -0.605 6.605 14 N -0.608 5.608 15 C 0.105 3.895 16 C -0.126 4.126 17 C -0.074 4.074 18 H 0.084 0.916 19 C -0.144 4.144 20 C -0.068 4.068 21 C -0.138 4.138 22 C -0.133 4.133 23 C 0.116 3.884 24 H 0.018 0.982 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.267 0.733 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.260 -0.522 -8.702 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.008 3.992 3 H 0.062 0.938 4 C -0.556 4.556 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.546 5.546 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.207 1.207 12 C 0.316 3.684 13 O -0.487 6.487 14 N -0.340 5.340 15 C -0.017 4.017 16 C -0.164 4.164 17 C -0.092 4.092 18 H 0.103 0.897 19 C -0.201 4.201 20 C -0.069 4.069 21 C -0.196 4.196 22 C -0.191 4.191 23 C -0.006 4.006 24 H 0.037 0.963 25 H 0.089 0.911 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.825 -0.809 -8.855 16.437 hybrid contribution -0.430 -0.501 1.066 1.254 sum 13.395 -1.310 -7.789 15.550 Atomic orbital electron populations 1.21441 0.97012 0.99277 0.99152 1.18840 0.94063 0.96276 0.90014 0.93812 1.20748 1.32190 1.12369 0.90276 0.93885 1.25558 0.94848 0.95491 1.01310 1.69969 1.36561 1.23457 1.24566 0.85683 0.79224 0.78413 0.78819 1.18938 1.20261 1.20685 1.21593 0.80721 0.81487 0.84571 1.90485 1.58086 1.37798 1.62325 1.48101 1.15958 1.36641 1.33280 1.21887 0.91868 0.89046 0.98919 1.21981 0.95187 1.00887 0.98382 1.21108 0.94838 0.96194 0.97086 0.89749 1.21893 0.95131 1.01202 1.01888 1.20887 0.93858 0.95714 0.96446 1.21884 1.01382 0.98053 0.98248 1.21815 1.00918 1.00391 0.95962 1.21721 0.94782 0.95854 0.88234 0.96307 0.91104 0.96061 0.92405 0.90088 0.90349 0.89132 0.93117 0.93360 0.90944 0.91816 0.94626 0.90823 0.94797 0.91116 0.90552 0.93168 0.92214 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.87 8.33 71.98 0.60 -5.27 16 2 C 0.03 1.51 1.81 -12.29 -0.02 1.48 16 3 H 0.04 2.28 6.30 -2.39 -0.02 2.26 16 4 C -0.52 -28.42 8.36 25.60 0.21 -28.20 16 5 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.53 5.30 84.65 0.45 1.98 16 7 N -0.91 -50.29 11.38 21.45 0.24 -50.05 16 8 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 9 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 C 0.52 25.54 6.74 87.66 0.59 26.13 16 13 O -0.60 -32.93 15.63 -3.06 -0.05 -32.98 16 14 N -0.61 -23.40 2.42 -818.89 -1.98 -25.38 16 15 C 0.10 3.43 6.27 86.36 0.54 3.97 16 16 C -0.13 -3.44 5.02 30.67 0.15 -3.28 16 17 C -0.07 -1.61 2.00 -10.75 -0.02 -1.63 16 18 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 19 C -0.14 -2.54 8.49 71.98 0.61 -1.93 16 20 C -0.07 -1.73 0.55 -52.09 -0.03 -1.75 16 21 C -0.14 -4.18 7.67 71.98 0.55 -3.63 16 22 C -0.13 -2.51 8.10 71.98 0.58 -1.93 16 23 C 0.12 3.72 5.09 86.36 0.44 4.16 16 24 H 0.02 1.00 8.04 -2.38 -0.02 0.98 16 25 H 0.07 3.89 6.23 -2.39 -0.01 3.88 16 26 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.08 3.05 5.35 -2.38 -0.01 3.04 16 30 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.05 1.66 6.34 -2.39 -0.02 1.64 16 32 H 0.05 0.95 6.47 -2.39 -0.02 0.93 16 33 H 0.07 1.04 6.40 -2.39 -0.02 1.03 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.85 6.47 -2.38 -0.02 1.83 16 37 H 0.03 1.25 5.97 -2.39 -0.01 1.24 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.21 6.42 -2.39 -0.02 1.19 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 2.22 7.03 -2.38 -0.02 2.21 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.48 314.36 5.88 -58.60 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.98 Total: 14.86 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 4.66 Total: -9.90 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -1.74 Total: -75.43 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.05 Total: -32.98 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -64.48 5.88 -58.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.554 kcal (2) G-P(sol) polarization free energy of solvation -64.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds