Wall clock time and date at job start Mon Mar 30 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47665 * 2 1 4 4 C 1.50701 * 109.47205 * 240.00203 * 2 1 3 5 5 H 1.08005 * 120.00182 * 240.00297 * 4 2 1 6 6 C 1.37869 * 120.00153 * 60.00244 * 4 2 1 7 7 N 1.31522 * 120.00158 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00321 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46664 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46968 * 120.00027 * 8 6 4 11 11 H 1.48499 * 109.47119 * 239.99934 * 8 6 4 12 12 C 1.50704 * 109.47168 * 120.00197 * 2 1 3 13 13 O 1.21282 * 119.99707 * 119.99391 * 12 2 1 14 14 N 1.34769 * 119.99823 * 300.00271 * 12 2 1 15 15 C 1.46500 * 119.99904 * 179.97438 * 14 12 2 16 16 H 1.09001 * 108.87564 * 33.60146 * 15 14 12 17 17 C 1.54243 * 108.89472 * 274.99705 * 15 14 12 18 18 C 1.50481 * 108.51755 * 159.35699 * 17 15 14 19 19 C 1.54064 * 112.49652 * 94.15008 * 18 17 15 20 20 C 1.54070 * 112.73517 * 318.33734 * 19 18 17 21 21 H 1.08998 * 108.87409 * 79.00697 * 20 19 18 22 22 C 1.53000 * 108.87479 * 197.45049 * 20 19 18 23 23 C 1.50398 * 112.53626 * 318.11518 * 20 19 18 24 24 C 1.45545 * 108.81815 * 152.16054 * 15 14 12 25 25 H 1.08990 * 109.47607 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47061 * 300.00066 * 1 2 3 27 27 H 1.09011 * 109.46429 * 59.99639 * 1 2 3 28 28 H 0.96994 * 119.99731 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00274 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.63222 * 39.64973 * 17 15 14 31 31 H 1.09001 * 109.78948 * 279.15977 * 17 15 14 32 32 H 1.09003 * 108.87250 * 333.37950 * 18 17 15 33 33 H 1.08990 * 108.87511 * 214.92937 * 18 17 15 34 34 H 1.09002 * 108.81244 * 79.14614 * 19 18 17 35 35 H 1.08996 * 108.81309 * 197.53402 * 19 18 17 36 36 H 1.08999 * 109.47236 * 60.00201 * 22 20 19 37 37 H 1.09001 * 109.46985 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47377 * 299.99798 * 22 20 19 39 39 H 1.09001 * 109.65947 * 334.62019 * 23 20 19 40 40 H 1.08993 * 109.69235 * 213.97360 * 23 20 19 41 41 H 1.08999 * 108.89206 * 303.38835 * 24 15 14 42 42 H 1.08993 * 108.89726 * 61.97652 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 2.1946 -0.9410 3.6507 16 1 3.1830 -1.3508 3.4427 17 6 1.2335 -2.1003 3.9848 18 6 1.9624 -3.0905 4.8523 19 6 1.7283 -2.8424 6.3547 20 6 1.7653 -1.3471 6.7242 21 1 0.8116 -0.8935 6.4544 22 6 1.9631 -1.2155 8.2356 23 6 2.8729 -0.6079 6.0251 24 6 2.3023 0.0210 4.7375 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5140 -0.8901 28 1 0.7089 1.1613 -3.4844 29 1 1.1493 0.5388 2.5436 30 1 0.9127 -2.5870 3.0638 31 1 0.3639 -1.7166 4.5183 32 1 3.0305 -3.0211 4.6457 33 1 1.6215 -4.0953 4.6034 34 1 0.7552 -3.2487 6.6306 35 1 2.4997 -3.3637 6.9214 36 1 2.9020 -1.6893 8.5219 37 1 1.9903 -0.1604 8.5080 38 1 1.1373 -1.7030 8.7540 39 1 3.6733 -1.3024 5.7698 40 1 3.2588 0.1767 6.6759 41 1 2.9544 0.8362 4.4239 42 1 1.3124 0.4239 4.9517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597544292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:52 Heat of formation + Delta-G solvation = -71.843522 kcal Electronic energy + Delta-G solvation = -19503.049135 eV Core-core repulsion = 16674.600800 eV Total energy + Delta-G solvation = -2828.448335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81430 -38.04791 -34.70591 -33.66174 -32.51949 -31.38136 -29.97433 -27.06407 -25.11626 -24.83039 -22.99368 -22.23093 -20.57992 -19.23864 -18.99722 -16.55584 -16.05618 -15.53977 -15.02454 -14.93465 -14.53926 -14.20657 -13.78783 -13.40106 -13.08219 -12.81492 -12.71606 -12.60893 -12.39491 -11.84404 -11.59210 -11.44535 -11.14652 -10.99285 -10.90240 -10.67890 -10.62855 -10.55973 -10.37749 -10.26332 -10.20782 -10.17002 -9.90728 -8.91327 -8.52272 -8.33945 -8.24906 -5.99320 -4.01964 3.34617 3.41974 3.50626 3.82198 3.94803 4.50396 4.59914 4.69376 4.74852 5.07895 5.14318 5.23786 5.31687 5.34209 5.39845 5.48648 5.56921 5.58834 5.68947 5.84331 5.90119 5.99320 6.04650 6.11797 6.14122 6.21292 6.25309 6.32624 6.42447 6.55222 6.59320 6.67484 6.88209 6.98681 7.24072 7.53237 7.80483 8.04505 8.22017 8.54240 9.07817 9.34893 9.63767 11.08389 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.004395 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.481817 B = 6369.285603 C = 6576.371851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.027 3.973 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.547 6.547 14 N -0.746 5.746 15 C 0.146 3.854 16 H 0.079 0.921 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.093 4.093 21 H 0.069 0.931 22 C -0.148 4.148 23 C -0.107 4.107 24 C -0.126 4.126 25 H 0.030 0.970 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.393 0.607 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 -1.396 18.927 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.006 3.994 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.423 6.423 14 N -0.399 5.399 15 C 0.041 3.959 16 H 0.097 0.903 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.111 4.111 21 H 0.087 0.913 22 C -0.206 4.206 23 C -0.145 4.145 24 C -0.164 4.164 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.226 0.774 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.020 -2.018 18.680 18.788 hybrid contribution -0.079 0.001 -0.790 0.794 sum -0.059 -2.017 17.890 18.003 Atomic orbital electron populations 1.21723 0.96620 0.99714 1.00826 1.18880 0.94099 0.96811 0.89614 0.93163 1.21204 1.30680 1.12694 0.89040 0.90763 1.24955 0.95185 0.95096 0.99103 1.69885 1.37313 1.23222 1.23331 0.86420 0.78606 0.79808 0.82559 1.19570 1.21085 1.21088 1.21915 0.78333 0.84261 0.84605 1.90519 1.38045 1.26907 1.86795 1.46515 1.55402 1.32362 1.05654 1.19737 0.98443 0.92576 0.85101 0.90307 1.21703 0.98306 0.96437 0.99768 1.21260 1.01121 0.99120 0.93909 1.21987 1.01327 0.95361 0.96101 1.20965 0.99373 0.95864 0.94910 0.91274 1.21965 1.01421 1.01383 0.95799 1.21322 0.98095 0.99414 0.95705 1.20765 1.01715 0.98768 0.95177 0.95097 0.96965 0.88953 0.93096 0.77366 0.91302 0.92029 0.91942 0.92353 0.92552 0.92436 0.92837 0.92785 0.93056 0.91395 0.91596 0.91591 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.68 2.64 -92.92 -0.25 0.44 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.07 2.27 6.75 -52.48 -0.35 1.91 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.52 11.32 55.43 0.63 -24.90 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.52 11.98 7.00 -10.99 -0.08 11.91 16 13 O -0.55 -14.43 15.08 5.56 0.08 -14.35 16 14 N -0.75 -13.12 4.88 -56.62 -0.28 -13.40 16 15 C 0.15 2.19 1.97 -70.79 -0.14 2.05 16 16 H 0.08 1.37 6.83 -51.93 -0.35 1.01 16 17 C -0.12 -1.74 5.18 -27.34 -0.14 -1.88 16 18 C -0.12 -1.41 5.31 -27.43 -0.15 -1.56 16 19 C -0.11 -1.08 5.23 -25.62 -0.13 -1.21 16 20 C -0.09 -0.85 2.20 -91.36 -0.20 -1.05 16 21 H 0.07 0.66 6.62 -51.93 -0.34 0.32 16 22 C -0.15 -1.15 8.83 37.16 0.33 -0.82 16 23 C -0.11 -1.05 5.13 -27.38 -0.14 -1.19 16 24 C -0.13 -1.46 4.62 -29.60 -0.14 -1.60 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.37 6.07 -51.92 -0.32 2.05 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 6.04 8.00 -40.82 -0.33 5.72 16 30 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 31 H 0.06 0.78 6.99 -51.93 -0.36 0.42 16 32 H 0.06 0.80 6.63 -51.93 -0.34 0.46 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 36 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.05 0.39 8.01 -51.93 -0.42 -0.02 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 40 H 0.07 0.57 7.62 -51.93 -0.40 0.18 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -30.78 319.56 -8.13 -38.91 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.28 Total: 2.62 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.09 Total: -10.78 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.35 Total: -38.30 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.78 -8.13 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597544292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.932 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds