Wall clock time and date at job start Mon Mar 30 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47665 * 2 1 4 4 C 1.50701 * 109.47205 * 240.00203 * 2 1 3 5 5 H 1.08005 * 120.00182 * 240.00297 * 4 2 1 6 6 C 1.37869 * 120.00153 * 60.00244 * 4 2 1 7 7 N 1.31522 * 120.00158 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00321 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46664 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46968 * 120.00027 * 8 6 4 11 11 H 1.48499 * 109.47119 * 239.99934 * 8 6 4 12 12 C 1.50704 * 109.47168 * 120.00197 * 2 1 3 13 13 O 1.21282 * 119.99707 * 119.99391 * 12 2 1 14 14 N 1.34769 * 119.99823 * 300.00271 * 12 2 1 15 15 C 1.46500 * 119.99904 * 179.97438 * 14 12 2 16 16 H 1.09001 * 108.87564 * 33.60146 * 15 14 12 17 17 C 1.54243 * 108.89472 * 274.99705 * 15 14 12 18 18 C 1.50481 * 108.51755 * 159.35699 * 17 15 14 19 19 C 1.54064 * 112.49652 * 94.15008 * 18 17 15 20 20 C 1.54070 * 112.73517 * 318.33734 * 19 18 17 21 21 H 1.08998 * 108.87409 * 79.00697 * 20 19 18 22 22 C 1.53000 * 108.87479 * 197.45049 * 20 19 18 23 23 C 1.50398 * 112.53626 * 318.11518 * 20 19 18 24 24 C 1.45545 * 108.81815 * 152.16054 * 15 14 12 25 25 H 1.08990 * 109.47607 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47061 * 300.00066 * 1 2 3 27 27 H 1.09011 * 109.46429 * 59.99639 * 1 2 3 28 28 H 0.96994 * 119.99731 * 179.97438 * 7 6 4 29 29 H 0.97002 * 120.00274 * 359.97438 * 14 12 2 30 30 H 1.08996 * 109.63222 * 39.64973 * 17 15 14 31 31 H 1.09001 * 109.78948 * 279.15977 * 17 15 14 32 32 H 1.09003 * 108.87250 * 333.37950 * 18 17 15 33 33 H 1.08990 * 108.87511 * 214.92937 * 18 17 15 34 34 H 1.09002 * 108.81244 * 79.14614 * 19 18 17 35 35 H 1.08996 * 108.81309 * 197.53402 * 19 18 17 36 36 H 1.08999 * 109.47236 * 60.00201 * 22 20 19 37 37 H 1.09001 * 109.46985 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.47377 * 299.99798 * 22 20 19 39 39 H 1.09001 * 109.65947 * 334.62019 * 23 20 19 40 40 H 1.08993 * 109.69235 * 213.97360 * 23 20 19 41 41 H 1.08999 * 108.89206 * 303.38835 * 24 15 14 42 42 H 1.08993 * 108.89726 * 61.97652 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 2.1946 -0.9410 3.6507 16 1 3.1830 -1.3508 3.4427 17 6 1.2335 -2.1003 3.9848 18 6 1.9624 -3.0905 4.8523 19 6 1.7283 -2.8424 6.3547 20 6 1.7653 -1.3471 6.7242 21 1 0.8116 -0.8935 6.4544 22 6 1.9631 -1.2155 8.2356 23 6 2.8729 -0.6079 6.0251 24 6 2.3023 0.0210 4.7375 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5140 -0.8901 28 1 0.7089 1.1613 -3.4844 29 1 1.1493 0.5388 2.5436 30 1 0.9127 -2.5870 3.0638 31 1 0.3639 -1.7166 4.5183 32 1 3.0305 -3.0211 4.6457 33 1 1.6215 -4.0953 4.6034 34 1 0.7552 -3.2487 6.6306 35 1 2.4997 -3.3637 6.9214 36 1 2.9020 -1.6893 8.5219 37 1 1.9903 -0.1604 8.5080 38 1 1.1373 -1.7030 8.7540 39 1 3.6733 -1.3024 5.7698 40 1 3.2588 0.1767 6.6759 41 1 2.9544 0.8362 4.4239 42 1 1.3124 0.4239 4.9517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597544292.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:52 Heat of formation + Delta-G solvation = -90.253169 kcal Electronic energy + Delta-G solvation = -19503.847437 eV Core-core repulsion = 16674.600800 eV Total energy + Delta-G solvation = -2829.246637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16420 -39.47882 -36.01898 -35.71481 -33.55075 -32.95769 -31.63078 -27.97103 -27.20624 -25.95450 -24.27918 -23.59705 -21.75647 -20.95455 -19.88718 -18.40812 -17.84472 -17.17659 -16.50515 -16.05422 -15.86266 -15.65719 -15.10837 -14.78761 -14.43976 -14.25788 -13.98386 -13.57111 -13.49480 -13.45230 -12.97176 -12.70863 -12.69392 -12.58823 -12.36485 -12.20506 -12.11131 -12.02397 -11.91661 -11.50953 -11.25198 -11.16994 -11.05505 -11.02571 -10.58591 -10.24133 -9.88436 -8.15497 -6.25729 1.38391 1.40146 1.53943 1.97492 2.36358 2.54885 3.13810 3.65457 3.82251 3.94872 4.12571 4.17853 4.31631 4.36479 4.41563 4.51113 4.56754 4.74948 4.77995 4.82726 4.88853 4.93903 4.96839 5.02392 5.10147 5.12329 5.20917 5.22742 5.29707 5.33232 5.40812 5.48988 5.51086 5.52252 5.65670 5.70362 5.78091 5.95220 6.22426 6.77151 6.89592 7.40485 7.60170 8.90532 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.004395 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.481817 B = 6369.285603 C = 6576.371851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.022 3.978 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.588 6.588 14 N -0.726 5.726 15 C 0.149 3.851 16 H 0.051 0.949 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.092 4.092 21 H 0.071 0.929 22 C -0.145 4.145 23 C -0.103 4.103 24 C -0.123 4.123 25 H 0.020 0.980 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 -0.754 20.730 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.310 3.690 13 O -0.468 6.468 14 N -0.378 5.378 15 C 0.045 3.955 16 H 0.069 0.931 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.142 4.142 20 C -0.111 4.111 21 H 0.089 0.911 22 C -0.202 4.202 23 C -0.141 4.141 24 C -0.161 4.161 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.691 -1.338 20.524 20.579 hybrid contribution 0.137 -0.182 -1.331 1.350 sum -0.554 -1.520 19.193 19.261 Atomic orbital electron populations 1.21530 0.95043 0.99258 1.01677 1.18826 0.95358 0.95890 0.89867 0.94229 1.21324 1.31447 1.12630 0.91240 0.93534 1.25600 0.95215 0.95771 1.01412 1.69957 1.37283 1.23626 1.24220 0.85551 0.78373 0.78586 0.79422 1.20562 1.19843 1.19867 1.21501 0.78100 0.83663 0.85767 1.90496 1.40061 1.28703 1.87556 1.46295 1.54304 1.32307 1.04919 1.19930 0.97114 0.93553 0.84875 0.93125 1.21627 0.98984 0.96259 0.98701 1.21232 0.99967 0.98411 0.95662 1.21952 1.02184 0.96294 0.93791 1.20959 0.99051 0.95035 0.96013 0.91093 1.21925 1.01824 1.02065 0.94399 1.21316 0.98049 0.99780 0.94922 1.20737 1.02981 0.97746 0.94642 0.96065 0.92939 0.91138 0.92610 0.75669 0.94968 0.89919 0.93190 0.92604 0.91609 0.91524 0.92606 0.92007 0.92449 0.92344 0.89758 0.91639 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 2 C 0.02 1.12 2.64 -12.29 -0.03 1.09 16 3 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.53 -31.35 8.37 25.60 0.21 -31.14 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -51.87 11.32 21.45 0.24 -51.62 16 8 Si 0.95 45.72 29.54 68.60 2.03 47.74 16 9 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.52 24.59 7.00 87.66 0.61 25.20 16 13 O -0.59 -32.41 15.08 -3.04 -0.05 -32.46 16 14 N -0.73 -25.22 4.88 -451.45 -2.20 -27.43 16 15 C 0.15 4.39 1.97 43.14 0.09 4.48 16 16 H 0.05 1.80 6.83 -2.39 -0.02 1.79 16 17 C -0.12 -3.24 5.18 30.20 0.16 -3.09 16 18 C -0.11 -2.72 5.31 30.14 0.16 -2.56 16 19 C -0.10 -1.80 5.23 31.32 0.16 -1.64 16 20 C -0.09 -1.41 2.20 -11.27 -0.02 -1.44 16 21 H 0.07 1.09 6.62 -2.39 -0.02 1.08 16 22 C -0.14 -1.75 8.83 71.98 0.64 -1.12 16 23 C -0.10 -1.76 5.13 30.17 0.15 -1.61 16 24 C -0.12 -2.58 4.62 28.74 0.13 -2.45 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 27 H 0.07 3.61 6.07 -2.38 -0.01 3.59 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.41 11.81 8.00 -92.71 -0.74 11.07 16 30 H 0.03 1.12 8.01 -2.39 -0.02 1.10 16 31 H 0.08 1.92 6.99 -2.39 -0.02 1.91 16 32 H 0.05 1.30 6.63 -2.39 -0.02 1.29 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.05 7.96 -2.39 -0.02 1.03 16 36 H 0.05 0.66 8.11 -2.39 -0.02 0.64 16 37 H 0.06 0.67 8.01 -2.39 -0.02 0.65 16 38 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.06 1.13 6.98 -2.39 -0.02 1.12 16 40 H 0.08 1.18 7.62 -2.39 -0.02 1.16 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.46 7.46 -2.39 -0.02 1.45 16 Total: -1.00 -68.02 319.56 3.61 -64.40 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.25 Total: 16.90 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.35 Total: -17.55 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.96 Total: -79.05 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.02 3.61 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597544292.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.849 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds