Wall clock time and date at job start Mon Mar 30 2020 07:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47672 * 2 1 4 4 C 1.50693 * 109.47213 * 120.00456 * 2 1 3 5 5 H 1.07998 * 120.00357 * 115.52993 * 4 2 1 6 6 C 1.37881 * 120.00085 * 295.53388 * 4 2 1 7 7 N 1.31512 * 120.00424 * 160.32087 * 6 4 2 8 8 Si 1.86802 * 119.99721 * 340.31378 * 6 4 2 9 9 H 1.48499 * 109.47265 * 180.02562 * 8 6 4 10 10 H 1.48509 * 109.46959 * 60.00408 * 8 6 4 11 11 H 1.48500 * 109.47613 * 300.00434 * 8 6 4 12 12 C 1.50709 * 109.46916 * 240.00243 * 2 1 3 13 13 O 1.21278 * 119.99900 * 260.60571 * 12 2 1 14 14 N 1.34774 * 119.99939 * 80.61125 * 12 2 1 15 15 C 1.46931 * 120.63045 * 4.39000 * 14 12 2 16 16 C 1.53614 * 108.54283 * 126.37246 * 15 14 12 17 17 H 1.09000 * 109.66327 * 294.84414 * 16 15 14 18 18 C 1.53005 * 109.43209 * 174.72296 * 16 15 14 19 19 C 1.53038 * 109.24644 * 54.85451 * 16 15 14 20 20 C 1.53040 * 109.53852 * 298.51168 * 19 16 15 21 21 H 1.08997 * 109.49892 * 301.41142 * 20 19 16 22 22 C 1.52995 * 109.52546 * 181.32741 * 20 19 16 23 23 C 1.46924 * 120.63074 * 184.67158 * 14 12 2 24 24 H 1.09000 * 109.58646 * 113.79219 * 23 14 12 25 25 C 1.53001 * 109.58664 * 353.36906 * 23 14 12 26 26 H 1.08998 * 109.47166 * 53.06271 * 1 2 3 27 27 H 1.08998 * 109.47285 * 173.05898 * 1 2 3 28 28 H 1.08997 * 109.46775 * 293.06472 * 1 2 3 29 29 H 0.97003 * 119.99675 * 354.91175 * 7 6 4 30 30 H 1.09009 * 109.58481 * 246.20440 * 15 14 12 31 31 H 1.09001 * 109.58682 * 6.62431 * 15 14 12 32 32 H 1.08999 * 109.46901 * 300.28789 * 18 16 15 33 33 H 1.08996 * 109.47020 * 60.28972 * 18 16 15 34 34 H 1.09005 * 109.47111 * 180.28659 * 18 16 15 35 35 H 1.08995 * 109.46582 * 178.49031 * 19 16 15 36 36 H 1.09006 * 109.45029 * 58.52353 * 19 16 15 37 37 H 1.08993 * 109.47509 * 300.14533 * 22 20 19 38 38 H 1.08997 * 109.47073 * 60.15268 * 22 20 19 39 39 H 1.09005 * 109.47027 * 180.14310 * 22 20 19 40 40 H 1.09004 * 109.47095 * 63.24455 * 25 23 14 41 41 H 1.08998 * 109.47359 * 183.24463 * 25 23 14 42 42 H 1.09000 * 109.47176 * 303.24537 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5924 -1.6287 1.1329 6 6 1.7769 -0.1883 2.4806 7 7 1.8563 -0.9583 3.5437 8 14 1.3182 1.6132 2.6644 9 1 1.0962 1.9236 4.0995 10 1 0.0750 1.8880 1.9000 11 1 2.4192 2.4605 2.1398 12 6 2.0323 -0.7104 -1.2306 13 8 2.3960 -1.8651 -1.1581 14 7 2.0774 -0.0625 -2.4115 15 6 1.7316 1.3630 -2.4969 16 6 2.8910 2.1070 -3.1767 17 1 3.7781 2.0588 -2.5452 18 6 2.4987 3.5697 -3.3953 19 6 3.1888 1.4509 -4.5268 20 6 3.6131 -0.0030 -4.3069 21 1 4.4932 -0.0319 -3.6645 22 6 3.9426 -0.6489 -5.6541 23 6 2.4672 -0.7696 -3.6389 24 1 1.6161 -0.8194 -4.3180 25 6 2.9319 -2.1850 -3.2899 26 1 -0.3633 0.6175 -0.8214 27 1 -0.3634 -1.0201 -0.1242 28 1 -0.3633 0.4026 0.9455 29 1 2.0217 -1.9088 3.4428 30 1 0.8216 1.4837 -3.0849 31 1 1.5771 1.7622 -1.4945 32 1 1.6109 3.6173 -4.0258 33 1 2.2868 4.0366 -2.4335 34 1 3.3190 4.0970 -3.8822 35 1 3.9932 1.9925 -5.0243 36 1 2.2940 1.4779 -5.1488 37 1 3.0626 -0.6188 -6.2964 38 1 4.7580 -0.1032 -6.1289 39 1 4.2422 -1.6851 -5.4966 40 1 2.1023 -2.7431 -2.8559 41 1 3.2749 -2.6881 -4.1939 42 1 3.7497 -2.1320 -2.5711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597568788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:58 Heat of formation + Delta-G solvation = -45.409462 kcal Electronic energy + Delta-G solvation = -20393.155405 eV Core-core repulsion = 17565.853337 eV Total energy + Delta-G solvation = -2827.302068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18065 -37.44863 -34.66207 -33.46286 -33.19625 -31.06137 -29.00236 -26.78320 -25.69484 -24.79926 -23.75362 -22.01633 -20.43392 -20.00569 -18.16320 -17.30114 -16.06808 -15.63706 -15.18426 -14.62554 -14.52677 -13.98972 -13.38307 -13.14336 -13.02335 -12.87467 -12.66817 -12.34424 -12.17284 -12.05131 -11.81460 -11.66340 -11.48073 -11.37926 -11.21438 -10.99729 -10.67144 -10.61950 -10.50692 -10.44971 -10.22743 -10.00671 -9.78353 -8.86976 -8.23043 -8.07558 -7.97751 -6.43239 -4.00629 3.34912 3.40317 3.53248 3.59578 3.62630 4.50927 4.65220 4.80535 4.82649 4.94676 5.25511 5.30776 5.34857 5.42854 5.54006 5.56352 5.60348 5.67100 5.72263 5.81998 5.82770 5.90306 5.97441 6.03028 6.10786 6.14006 6.22651 6.25855 6.27231 6.41660 6.49390 6.55406 6.61788 6.78481 6.92539 7.19709 7.27659 7.85668 8.24777 8.49177 9.04397 9.18595 9.65988 10.96307 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.007583 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.160675 B = 3691.420462 C = 4467.405146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.003 3.997 3 H 0.037 0.963 4 C -0.589 4.589 5 H 0.072 0.928 6 C 0.033 3.967 7 N -0.902 5.902 8 Si 1.034 2.966 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.283 1.283 12 C 0.530 3.470 13 O -0.530 6.530 14 N -0.625 5.625 15 C 0.113 3.887 16 C -0.111 4.111 17 H 0.076 0.924 18 C -0.144 4.144 19 C -0.105 4.105 20 C -0.106 4.106 21 H 0.073 0.927 22 C -0.144 4.144 23 C 0.149 3.851 24 H 0.059 0.941 25 C -0.134 4.134 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.270 0.730 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 7.776 -17.545 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 H 0.055 0.945 4 C -0.627 4.627 5 H 0.090 0.910 6 C -0.172 4.172 7 N -0.535 5.535 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.210 1.210 12 C 0.321 3.679 13 O -0.405 6.405 14 N -0.360 5.360 15 C -0.011 4.011 16 C -0.130 4.130 17 H 0.094 0.906 18 C -0.202 4.202 19 C -0.143 4.143 20 C -0.125 4.125 21 H 0.092 0.908 22 C -0.201 4.201 23 C 0.046 3.954 24 H 0.077 0.923 25 C -0.190 4.190 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.272 8.281 -16.333 18.314 hybrid contribution 0.352 -1.048 -1.209 1.638 sum 0.623 7.233 -17.542 18.985 Atomic orbital electron populations 1.22124 0.96886 1.00548 1.00325 1.19212 0.93605 0.96547 0.92488 0.94500 1.21918 1.39211 1.11954 0.89611 0.90974 1.25702 0.94121 1.05352 0.92019 1.70810 1.44187 1.07097 1.31426 0.84223 0.77041 0.76148 0.76348 1.20968 1.20033 1.20973 1.21392 0.75845 0.87056 0.83567 1.90598 1.47079 1.18139 1.84690 1.48385 1.69777 1.10124 1.07710 1.21871 0.96177 0.80835 1.02189 1.21628 0.99406 0.94843 0.97159 0.90580 1.21763 1.01283 0.95228 1.01915 1.21618 1.01058 0.95006 0.96608 1.21594 0.98972 0.94971 0.96984 0.90841 1.21811 1.01144 1.00930 0.96264 1.21165 0.95395 0.92811 0.86032 0.92259 1.22230 1.03654 0.94006 0.99155 0.95485 0.93376 0.91868 0.91976 0.92144 0.88937 0.92648 0.92246 0.92602 0.92043 0.92053 0.92806 0.92775 0.92166 0.90959 0.94702 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.75 37.16 0.33 -2.74 16 2 C 0.00 0.08 1.38 -92.92 -0.13 -0.05 16 3 H 0.04 0.84 4.99 -51.93 -0.26 0.58 16 4 C -0.59 -17.13 8.62 -34.44 -0.30 -17.42 16 5 H 0.07 2.38 7.16 -52.49 -0.38 2.00 16 6 C 0.03 0.97 5.25 -17.82 -0.09 0.87 16 7 N -0.90 -28.06 13.70 55.43 0.76 -27.31 16 8 Si 1.03 24.48 26.33 -169.99 -4.48 20.01 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.27 -5.84 5.83 56.52 0.33 -5.51 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.53 12.04 6.75 -10.98 -0.07 11.96 16 13 O -0.53 -13.59 11.09 5.56 0.06 -13.53 16 14 N -0.62 -11.13 2.97 -164.95 -0.49 -11.62 16 15 C 0.11 1.64 5.14 -3.49 -0.02 1.63 16 16 C -0.11 -1.36 2.89 -90.28 -0.26 -1.62 16 17 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 18 C -0.14 -1.41 9.20 37.16 0.34 -1.07 16 19 C -0.11 -1.16 4.45 -26.69 -0.12 -1.28 16 20 C -0.11 -1.34 2.34 -90.50 -0.21 -1.55 16 21 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 22 C -0.14 -1.48 8.97 37.15 0.33 -1.15 16 23 C 0.15 2.30 2.95 -67.60 -0.20 2.10 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.13 -2.29 7.42 37.16 0.28 -2.01 16 26 H 0.03 0.48 7.56 -51.93 -0.39 0.09 16 27 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 28 H 0.06 1.41 4.94 -51.93 -0.26 1.16 16 29 H 0.27 8.50 8.73 -40.82 -0.36 8.14 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.09 1.45 5.30 -51.93 -0.28 1.17 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 40 H 0.07 1.42 6.67 -51.93 -0.35 1.07 16 41 H 0.03 0.49 6.49 -51.93 -0.34 0.15 16 42 H 0.07 1.40 6.83 -51.93 -0.35 1.05 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -31.89 311.13 -6.81 -38.70 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.23 Total: 1.38 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.13 Total: -12.32 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.27 Total: -38.93 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.06 Total: -13.53 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.48 Total: 20.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.89 -6.81 -38.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597568788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.709 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds