Wall clock time and date at job start Mon Mar 30 2020 07:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47672 * 2 1 4 4 C 1.50693 * 109.47213 * 120.00456 * 2 1 3 5 5 H 1.07998 * 120.00357 * 115.52993 * 4 2 1 6 6 C 1.37881 * 120.00085 * 295.53388 * 4 2 1 7 7 N 1.31512 * 120.00424 * 160.32087 * 6 4 2 8 8 Si 1.86802 * 119.99721 * 340.31378 * 6 4 2 9 9 H 1.48499 * 109.47265 * 180.02562 * 8 6 4 10 10 H 1.48509 * 109.46959 * 60.00408 * 8 6 4 11 11 H 1.48500 * 109.47613 * 300.00434 * 8 6 4 12 12 C 1.50709 * 109.46916 * 240.00243 * 2 1 3 13 13 O 1.21278 * 119.99900 * 260.60571 * 12 2 1 14 14 N 1.34774 * 119.99939 * 80.61125 * 12 2 1 15 15 C 1.46931 * 120.63045 * 4.39000 * 14 12 2 16 16 C 1.53614 * 108.54283 * 126.37246 * 15 14 12 17 17 H 1.09000 * 109.66327 * 294.84414 * 16 15 14 18 18 C 1.53005 * 109.43209 * 174.72296 * 16 15 14 19 19 C 1.53038 * 109.24644 * 54.85451 * 16 15 14 20 20 C 1.53040 * 109.53852 * 298.51168 * 19 16 15 21 21 H 1.08997 * 109.49892 * 301.41142 * 20 19 16 22 22 C 1.52995 * 109.52546 * 181.32741 * 20 19 16 23 23 C 1.46924 * 120.63074 * 184.67158 * 14 12 2 24 24 H 1.09000 * 109.58646 * 113.79219 * 23 14 12 25 25 C 1.53001 * 109.58664 * 353.36906 * 23 14 12 26 26 H 1.08998 * 109.47166 * 53.06271 * 1 2 3 27 27 H 1.08998 * 109.47285 * 173.05898 * 1 2 3 28 28 H 1.08997 * 109.46775 * 293.06472 * 1 2 3 29 29 H 0.97003 * 119.99675 * 354.91175 * 7 6 4 30 30 H 1.09009 * 109.58481 * 246.20440 * 15 14 12 31 31 H 1.09001 * 109.58682 * 6.62431 * 15 14 12 32 32 H 1.08999 * 109.46901 * 300.28789 * 18 16 15 33 33 H 1.08996 * 109.47020 * 60.28972 * 18 16 15 34 34 H 1.09005 * 109.47111 * 180.28659 * 18 16 15 35 35 H 1.08995 * 109.46582 * 178.49031 * 19 16 15 36 36 H 1.09006 * 109.45029 * 58.52353 * 19 16 15 37 37 H 1.08993 * 109.47509 * 300.14533 * 22 20 19 38 38 H 1.08997 * 109.47073 * 60.15268 * 22 20 19 39 39 H 1.09005 * 109.47027 * 180.14310 * 22 20 19 40 40 H 1.09004 * 109.47095 * 63.24455 * 25 23 14 41 41 H 1.08998 * 109.47359 * 183.24463 * 25 23 14 42 42 H 1.09000 * 109.47176 * 303.24537 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5924 -1.6287 1.1329 6 6 1.7769 -0.1883 2.4806 7 7 1.8563 -0.9583 3.5437 8 14 1.3182 1.6132 2.6644 9 1 1.0962 1.9236 4.0995 10 1 0.0750 1.8880 1.9000 11 1 2.4192 2.4605 2.1398 12 6 2.0323 -0.7104 -1.2306 13 8 2.3960 -1.8651 -1.1581 14 7 2.0774 -0.0625 -2.4115 15 6 1.7316 1.3630 -2.4969 16 6 2.8910 2.1070 -3.1767 17 1 3.7781 2.0588 -2.5452 18 6 2.4987 3.5697 -3.3953 19 6 3.1888 1.4509 -4.5268 20 6 3.6131 -0.0030 -4.3069 21 1 4.4932 -0.0319 -3.6645 22 6 3.9426 -0.6489 -5.6541 23 6 2.4672 -0.7696 -3.6389 24 1 1.6161 -0.8194 -4.3180 25 6 2.9319 -2.1850 -3.2899 26 1 -0.3633 0.6175 -0.8214 27 1 -0.3634 -1.0201 -0.1242 28 1 -0.3633 0.4026 0.9455 29 1 2.0217 -1.9088 3.4428 30 1 0.8216 1.4837 -3.0849 31 1 1.5771 1.7622 -1.4945 32 1 1.6109 3.6173 -4.0258 33 1 2.2868 4.0366 -2.4335 34 1 3.3190 4.0970 -3.8822 35 1 3.9932 1.9925 -5.0243 36 1 2.2940 1.4779 -5.1488 37 1 3.0626 -0.6188 -6.2964 38 1 4.7580 -0.1032 -6.1289 39 1 4.2422 -1.6851 -5.4966 40 1 2.1023 -2.7431 -2.8559 41 1 3.2749 -2.6881 -4.1939 42 1 3.7497 -2.1320 -2.5711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597568788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:58 Heat of formation + Delta-G solvation = -66.216034 kcal Electronic energy + Delta-G solvation = -20394.057646 eV Core-core repulsion = 17565.853337 eV Total energy + Delta-G solvation = -2828.204309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61967 -38.87056 -36.23184 -35.04897 -34.57176 -33.00368 -30.24770 -27.63962 -26.96285 -26.77565 -25.17985 -23.62489 -21.48185 -21.17520 -19.90051 -19.33117 -17.68809 -17.04249 -16.48270 -15.88598 -15.71528 -15.60209 -15.12526 -14.55748 -14.33124 -14.09042 -13.98016 -13.81670 -13.45123 -13.39102 -13.09347 -12.94917 -12.79861 -12.72042 -12.64899 -12.38479 -12.30051 -11.90009 -11.75751 -11.68784 -11.59039 -11.45138 -11.14958 -11.01849 -10.44460 -9.79810 -9.41816 -8.78940 -6.37247 1.45932 1.55549 1.73862 1.87007 2.15525 2.52913 3.02682 3.64687 3.77867 3.81566 3.95461 4.07732 4.25324 4.28038 4.39111 4.45735 4.58530 4.62124 4.67392 4.68774 4.74641 4.76340 4.83797 4.86222 4.92303 5.03341 5.06208 5.09854 5.13875 5.21150 5.30537 5.32813 5.42251 5.46346 5.48616 5.57414 5.77143 5.92076 6.02874 6.56921 6.60712 7.39825 7.50001 8.58950 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.007583 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.160675 B = 3691.420462 C = 4467.405146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 H 0.061 0.939 4 C -0.601 4.601 5 H 0.010 0.990 6 C -0.020 4.020 7 N -0.934 5.934 8 Si 1.079 2.921 9 H -0.289 1.289 10 H -0.227 1.227 11 H -0.259 1.259 12 C 0.521 3.479 13 O -0.578 6.578 14 N -0.616 5.616 15 C 0.101 3.899 16 C -0.109 4.109 17 H 0.052 0.948 18 C -0.138 4.138 19 C -0.100 4.100 20 C -0.101 4.101 21 H 0.047 0.953 22 C -0.139 4.139 23 C 0.144 3.856 24 H 0.084 0.916 25 C -0.124 4.124 26 H 0.073 0.927 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.248 0.752 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 11.613 -20.917 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.022 4.022 3 H 0.078 0.922 4 C -0.639 4.639 5 H 0.028 0.972 6 C -0.217 4.217 7 N -0.569 5.569 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.150 1.150 11 H -0.183 1.183 12 C 0.311 3.689 13 O -0.457 6.457 14 N -0.350 5.350 15 C -0.021 4.021 16 C -0.128 4.128 17 H 0.071 0.929 18 C -0.196 4.196 19 C -0.137 4.137 20 C -0.121 4.121 21 H 0.065 0.935 22 C -0.196 4.196 23 C 0.042 3.958 24 H 0.102 0.898 25 C -0.181 4.181 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.982 12.139 -19.777 23.226 hybrid contribution 0.820 -2.360 -0.213 2.507 sum -0.162 9.779 -19.990 22.255 Atomic orbital electron populations 1.21990 0.94711 1.00380 1.02011 1.19158 0.95204 0.96873 0.90933 0.92175 1.22006 1.38848 1.10253 0.92814 0.97180 1.27488 0.93090 1.09813 0.91283 1.70968 1.47153 1.06098 1.32685 0.83731 0.79640 0.69903 0.76946 1.21544 1.15008 1.18325 1.21242 0.76078 0.86587 0.84983 1.90606 1.49313 1.20137 1.85683 1.48360 1.68123 1.11614 1.06861 1.22242 0.98578 0.78545 1.02715 1.21604 0.97445 0.96533 0.97222 0.92909 1.21725 1.02488 0.92961 1.02410 1.21617 1.02614 0.93255 0.96205 1.21543 0.96575 0.96403 0.97537 0.93471 1.21781 1.02527 1.00431 0.94906 1.21422 0.97442 0.91671 0.85304 0.89768 1.22017 1.01093 0.95811 0.99210 0.90773 0.95374 0.92180 0.94346 0.89064 0.89834 0.90933 0.92396 0.91364 0.90116 0.90036 0.91070 0.91105 0.92938 0.94191 0.91535 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.75 71.98 0.63 -4.93 16 2 C 0.00 0.00 1.38 -12.29 -0.02 -0.01 16 3 H 0.06 2.62 4.99 -2.39 -0.01 2.60 16 4 C -0.60 -36.75 8.62 25.60 0.22 -36.52 16 5 H 0.01 0.71 7.16 -2.91 -0.02 0.69 16 6 C -0.02 -1.16 5.25 84.66 0.44 -0.72 16 7 N -0.93 -61.03 13.70 21.45 0.29 -60.74 16 8 Si 1.08 48.08 26.33 68.60 1.81 49.89 16 9 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 10 H -0.23 -8.39 5.83 99.48 0.58 -7.81 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 12 C 0.52 24.21 6.75 87.66 0.59 24.80 16 13 O -0.58 -31.80 11.09 -3.02 -0.03 -31.83 16 14 N -0.62 -21.20 2.97 -794.18 -2.36 -23.55 16 15 C 0.10 2.58 5.14 86.50 0.44 3.03 16 16 C -0.11 -2.26 2.89 -10.57 -0.03 -2.29 16 17 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 18 C -0.14 -2.03 9.20 71.98 0.66 -1.37 16 19 C -0.10 -1.75 4.45 30.62 0.14 -1.62 16 20 C -0.10 -2.31 2.34 -10.72 -0.03 -2.34 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 C -0.14 -2.37 8.97 71.98 0.65 -1.73 16 23 C 0.14 4.21 2.95 44.98 0.13 4.34 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 C -0.12 -4.38 7.42 71.98 0.53 -3.85 16 26 H 0.07 2.38 7.56 -2.39 -0.02 2.36 16 27 H 0.03 1.24 8.13 -2.39 -0.02 1.23 16 28 H 0.06 2.52 4.94 -2.39 -0.01 2.51 16 29 H 0.25 16.83 8.73 -92.71 -0.81 16.02 16 30 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.08 2.29 5.30 -2.39 -0.01 2.28 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 0.98 6.55 -2.38 -0.02 0.96 16 40 H 0.04 1.64 6.67 -2.39 -0.02 1.63 16 41 H 0.07 1.86 6.49 -2.39 -0.02 1.85 16 42 H 0.03 1.35 6.83 -2.39 -0.02 1.34 16 Total: -1.00 -77.51 311.13 4.89 -72.62 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.81 Total: 16.82 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 4.37 Total: -23.21 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.06 Total: -84.29 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.03 Total: -31.83 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.81 Total: 49.89 kcal Total: -77.51 4.89 -72.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597568788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.405 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds