Wall clock time and date at job start Mon Mar 30 2020 07:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47025 * 2 1 4 4 C 1.50694 * 109.47242 * 119.99777 * 2 1 3 5 5 H 1.08002 * 119.99986 * 119.99528 * 4 2 1 6 6 C 1.37877 * 120.00536 * 299.72908 * 4 2 1 7 7 N 1.31517 * 119.99352 * 0.27003 * 6 4 2 8 8 Si 1.86793 * 120.00362 * 180.27131 * 6 4 2 9 9 H 1.48504 * 109.47209 * 60.00094 * 8 6 4 10 10 H 1.48506 * 109.47017 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47317 * 299.99837 * 8 6 4 12 12 C 1.50696 * 109.47024 * 240.00390 * 2 1 3 13 13 O 1.21282 * 119.99715 * 253.91831 * 12 2 1 14 14 N 1.34775 * 120.00653 * 73.92257 * 12 2 1 15 15 C 1.46930 * 120.62771 * 5.47066 * 14 12 2 16 16 C 1.53190 * 108.77769 * 126.36586 * 15 14 12 17 17 H 1.08994 * 109.49925 * 294.69019 * 16 15 14 18 18 C 1.52994 * 109.49821 * 174.61532 * 16 15 14 19 19 C 1.53043 * 109.30885 * 54.63727 * 16 15 14 20 20 C 1.53043 * 109.53795 * 298.63192 * 19 16 15 21 21 H 1.08999 * 109.49983 * 301.41730 * 20 19 16 22 22 C 1.52999 * 109.49939 * 181.31582 * 20 19 16 23 23 C 1.46925 * 120.63517 * 185.19232 * 14 12 2 24 24 H 1.09004 * 109.58333 * 353.41521 * 23 14 12 25 25 C 1.52998 * 109.58707 * 113.84304 * 23 14 12 26 26 H 1.09000 * 109.46753 * 66.14479 * 1 2 3 27 27 H 1.08997 * 109.47260 * 186.14441 * 1 2 3 28 28 H 1.09004 * 109.47039 * 306.14548 * 1 2 3 29 29 H 0.97005 * 119.99474 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.58506 * 246.15876 * 15 14 12 31 31 H 1.09002 * 109.58834 * 6.58359 * 15 14 12 32 32 H 1.09004 * 109.47026 * 60.00596 * 18 16 15 33 33 H 1.09005 * 109.47271 * 179.97438 * 18 16 15 34 34 H 1.09000 * 109.47475 * 300.00669 * 18 16 15 35 35 H 1.09001 * 109.46267 * 58.65321 * 19 16 15 36 36 H 1.09006 * 109.46082 * 178.61490 * 19 16 15 37 37 H 1.09005 * 109.46611 * 60.00150 * 22 20 19 38 38 H 1.08995 * 109.47606 * 180.02562 * 22 20 19 39 39 H 1.09004 * 109.47496 * 300.00456 * 22 20 19 40 40 H 1.08993 * 109.47356 * 59.99974 * 25 23 14 41 41 H 1.09004 * 109.46952 * 180.02562 * 25 23 14 42 42 H 1.08998 * 109.46835 * 300.00024 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.7040 -0.2361 2.4827 7 7 0.9479 0.8332 2.6034 8 14 2.3330 -1.1122 4.0078 9 1 3.8180 -1.1115 4.0021 10 1 1.8428 -0.4087 5.2204 11 1 1.8386 -2.5124 4.0136 12 6 2.0323 -0.7103 -1.2305 13 8 2.5088 -1.8217 -1.1370 14 7 1.9523 -0.1106 -2.4348 15 6 1.4894 1.2791 -2.5497 16 6 2.5349 2.0844 -3.3275 17 1 3.4586 2.1340 -2.7510 18 6 2.0097 3.5002 -3.5734 19 6 2.8062 1.3994 -4.6689 20 6 3.3629 -0.0049 -4.4231 21 1 4.2788 0.0644 -3.8363 22 6 3.6644 -0.6767 -5.7643 23 6 2.3319 -0.8320 -3.6571 24 1 2.7636 -1.7973 -3.3925 25 6 1.0955 -1.0427 -4.5334 26 1 -0.3633 0.4156 -0.9399 27 1 -0.3633 -1.0217 0.1100 28 1 -0.3633 0.6062 0.8299 29 1 0.7165 1.1667 3.4844 30 1 0.5384 1.3047 -3.0818 31 1 1.3653 1.7064 -1.5546 32 1 1.8144 3.9864 -2.6176 33 1 2.7542 4.0730 -4.1265 34 1 1.0866 3.4501 -4.1509 35 1 1.8772 1.3278 -5.2345 36 1 3.5317 1.9837 -5.2349 37 1 4.3996 -0.0849 -6.3097 38 1 4.0604 -1.6768 -5.5888 39 1 2.7477 -0.7468 -6.3498 40 1 0.6707 -0.0753 -4.8009 41 1 1.3792 -1.5784 -5.4393 42 1 0.3558 -1.6249 -3.9840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597568789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:03 Heat of formation + Delta-G solvation = -60.838044 kcal Electronic energy + Delta-G solvation = -20259.755736 eV Core-core repulsion = 17431.784634 eV Total energy + Delta-G solvation = -2827.971102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02836 -37.45022 -34.32560 -33.48630 -33.11256 -30.42312 -28.80832 -26.70295 -25.88007 -25.10510 -24.05658 -22.07161 -20.62046 -19.23977 -17.94307 -16.50116 -15.89047 -15.44306 -15.25329 -14.59373 -14.34503 -14.15487 -13.31847 -13.12446 -12.96843 -12.79132 -12.59172 -12.27183 -12.07073 -12.01266 -11.80052 -11.54570 -11.30576 -11.20707 -10.92157 -10.75133 -10.70274 -10.53215 -10.49436 -10.26340 -10.15891 -10.05848 -9.90962 -8.92119 -8.51142 -8.24972 -7.94959 -6.00318 -4.02409 3.38131 3.40280 3.45704 3.70225 3.75705 4.49226 4.71118 4.90286 4.93029 5.07111 5.32980 5.33652 5.44749 5.48015 5.59278 5.62076 5.66511 5.77072 5.77613 5.82771 5.92788 5.96595 6.00159 6.07098 6.13493 6.17645 6.27958 6.31280 6.39395 6.52616 6.63719 6.70889 6.88029 6.99942 7.24523 7.50904 7.78887 8.02870 8.15610 8.45367 9.04769 9.29728 9.62460 11.07775 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.006308 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.308392 B = 4437.964778 C = 4877.604113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.032 3.968 3 H 0.049 0.951 4 C -0.501 4.501 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.548 6.548 14 N -0.621 5.621 15 C 0.115 3.885 16 C -0.110 4.110 17 H 0.074 0.926 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.102 4.102 21 H 0.071 0.929 22 C -0.145 4.145 23 C 0.139 3.861 24 H 0.093 0.907 25 C -0.161 4.161 26 H 0.013 0.987 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 4.155 -15.514 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.539 4.539 5 H 0.089 0.911 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.424 6.424 14 N -0.356 5.356 15 C -0.009 4.009 16 C -0.129 4.129 17 H 0.092 0.908 18 C -0.201 4.201 19 C -0.144 4.144 20 C -0.121 4.121 21 H 0.090 0.910 22 C -0.203 4.203 23 C 0.035 3.965 24 H 0.111 0.889 25 C -0.219 4.219 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.969 3.644 -15.279 15.738 hybrid contribution 0.286 -0.315 0.793 0.900 sum 1.255 3.329 -14.486 14.917 Atomic orbital electron populations 1.21712 0.96287 1.00881 0.99723 1.18856 0.94172 0.96568 0.89322 0.93368 1.21101 1.31168 1.12548 0.89124 0.91091 1.24933 0.95136 0.95046 0.99025 1.69878 1.37165 1.23024 1.23571 0.86524 0.79243 0.79770 0.81704 1.20262 1.21370 1.20192 1.21998 0.75980 0.86296 0.84222 1.90508 1.44986 1.21136 1.85799 1.48377 1.67793 1.13248 1.06149 1.21750 0.95636 0.81539 1.01926 1.21539 0.99847 0.94833 0.96714 0.90778 1.21750 1.00791 0.95674 1.01888 1.21651 1.00846 0.95116 0.96765 1.21407 0.98917 0.95314 0.96459 0.91041 1.21858 1.01398 1.00479 0.96527 1.20896 0.94149 0.96578 0.84861 0.88878 1.22191 0.98393 1.01714 0.99590 0.96798 0.94796 0.89257 0.92962 0.92394 0.88551 0.92167 0.92772 0.92741 0.91762 0.92270 0.92843 0.92606 0.92273 0.92408 0.91865 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.61 37.16 0.32 -2.72 16 2 C 0.03 0.81 1.78 -92.93 -0.17 0.64 16 3 H 0.05 1.25 6.66 -51.92 -0.35 0.90 16 4 C -0.50 -14.48 8.35 -34.44 -0.29 -14.77 16 5 H 0.07 2.17 6.84 -52.49 -0.36 1.81 16 6 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 7 N -0.90 -25.34 11.40 55.43 0.63 -24.70 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.52 12.41 6.90 -10.99 -0.08 12.34 16 13 O -0.55 -14.78 14.99 5.56 0.08 -14.70 16 14 N -0.62 -11.51 2.68 -165.47 -0.44 -11.95 16 15 C 0.11 1.79 4.16 -3.71 -0.02 1.78 16 16 C -0.11 -1.42 2.87 -90.50 -0.26 -1.68 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 18 C -0.14 -1.52 9.20 37.15 0.34 -1.18 16 19 C -0.11 -1.22 4.24 -26.69 -0.11 -1.33 16 20 C -0.10 -1.32 2.63 -90.72 -0.24 -1.55 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.14 -1.50 8.70 37.16 0.32 -1.18 16 23 C 0.14 2.20 2.79 -67.82 -0.19 2.01 16 24 H 0.09 1.70 7.00 -51.93 -0.36 1.34 16 25 C -0.16 -2.12 8.50 37.16 0.32 -1.81 16 26 H 0.01 0.27 6.91 -51.93 -0.36 -0.09 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 2.28 6.27 -51.93 -0.33 1.95 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 31 H 0.10 1.68 5.29 -51.93 -0.27 1.40 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.69 6.49 -51.93 -0.34 0.36 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.56 6.35 -51.93 -0.33 0.23 16 40 H 0.06 0.70 5.74 -51.93 -0.30 0.40 16 41 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -30.76 315.15 -7.22 -37.98 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.08 Total: -0.57 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -0.14 Total: -7.88 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.19 Total: -36.66 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.76 -7.22 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597568789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.861 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds