Wall clock time and date at job start Mon Mar 30 2020 07:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47025 * 2 1 4 4 C 1.50694 * 109.47242 * 119.99777 * 2 1 3 5 5 H 1.08002 * 119.99986 * 119.99528 * 4 2 1 6 6 C 1.37877 * 120.00536 * 299.72908 * 4 2 1 7 7 N 1.31517 * 119.99352 * 0.27003 * 6 4 2 8 8 Si 1.86793 * 120.00362 * 180.27131 * 6 4 2 9 9 H 1.48504 * 109.47209 * 60.00094 * 8 6 4 10 10 H 1.48506 * 109.47017 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47317 * 299.99837 * 8 6 4 12 12 C 1.50696 * 109.47024 * 240.00390 * 2 1 3 13 13 O 1.21282 * 119.99715 * 253.91831 * 12 2 1 14 14 N 1.34775 * 120.00653 * 73.92257 * 12 2 1 15 15 C 1.46930 * 120.62771 * 5.47066 * 14 12 2 16 16 C 1.53190 * 108.77769 * 126.36586 * 15 14 12 17 17 H 1.08994 * 109.49925 * 294.69019 * 16 15 14 18 18 C 1.52994 * 109.49821 * 174.61532 * 16 15 14 19 19 C 1.53043 * 109.30885 * 54.63727 * 16 15 14 20 20 C 1.53043 * 109.53795 * 298.63192 * 19 16 15 21 21 H 1.08999 * 109.49983 * 301.41730 * 20 19 16 22 22 C 1.52999 * 109.49939 * 181.31582 * 20 19 16 23 23 C 1.46925 * 120.63517 * 185.19232 * 14 12 2 24 24 H 1.09004 * 109.58333 * 353.41521 * 23 14 12 25 25 C 1.52998 * 109.58707 * 113.84304 * 23 14 12 26 26 H 1.09000 * 109.46753 * 66.14479 * 1 2 3 27 27 H 1.08997 * 109.47260 * 186.14441 * 1 2 3 28 28 H 1.09004 * 109.47039 * 306.14548 * 1 2 3 29 29 H 0.97005 * 119.99474 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.58506 * 246.15876 * 15 14 12 31 31 H 1.09002 * 109.58834 * 6.58359 * 15 14 12 32 32 H 1.09004 * 109.47026 * 60.00596 * 18 16 15 33 33 H 1.09005 * 109.47271 * 179.97438 * 18 16 15 34 34 H 1.09000 * 109.47475 * 300.00669 * 18 16 15 35 35 H 1.09001 * 109.46267 * 58.65321 * 19 16 15 36 36 H 1.09006 * 109.46082 * 178.61490 * 19 16 15 37 37 H 1.09005 * 109.46611 * 60.00150 * 22 20 19 38 38 H 1.08995 * 109.47606 * 180.02562 * 22 20 19 39 39 H 1.09004 * 109.47496 * 300.00456 * 22 20 19 40 40 H 1.08993 * 109.47356 * 59.99974 * 25 23 14 41 41 H 1.09004 * 109.46952 * 180.02562 * 25 23 14 42 42 H 1.08998 * 109.46835 * 300.00024 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.7040 -0.2361 2.4827 7 7 0.9479 0.8332 2.6034 8 14 2.3330 -1.1122 4.0078 9 1 3.8180 -1.1115 4.0021 10 1 1.8428 -0.4087 5.2204 11 1 1.8386 -2.5124 4.0136 12 6 2.0323 -0.7103 -1.2305 13 8 2.5088 -1.8217 -1.1370 14 7 1.9523 -0.1106 -2.4348 15 6 1.4894 1.2791 -2.5497 16 6 2.5349 2.0844 -3.3275 17 1 3.4586 2.1340 -2.7510 18 6 2.0097 3.5002 -3.5734 19 6 2.8062 1.3994 -4.6689 20 6 3.3629 -0.0049 -4.4231 21 1 4.2788 0.0644 -3.8363 22 6 3.6644 -0.6767 -5.7643 23 6 2.3319 -0.8320 -3.6571 24 1 2.7636 -1.7973 -3.3925 25 6 1.0955 -1.0427 -4.5334 26 1 -0.3633 0.4156 -0.9399 27 1 -0.3633 -1.0217 0.1100 28 1 -0.3633 0.6062 0.8299 29 1 0.7165 1.1667 3.4844 30 1 0.5384 1.3047 -3.0818 31 1 1.3653 1.7064 -1.5546 32 1 1.8144 3.9864 -2.6176 33 1 2.7542 4.0730 -4.1265 34 1 1.0866 3.4501 -4.1509 35 1 1.8772 1.3278 -5.2345 36 1 3.5317 1.9837 -5.2349 37 1 4.3996 -0.0849 -6.3097 38 1 4.0604 -1.6768 -5.5888 39 1 2.7477 -0.7468 -6.3498 40 1 0.6707 -0.0753 -4.8009 41 1 1.3792 -1.5784 -5.4393 42 1 0.3558 -1.6249 -3.9840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597568789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:02 Heat of formation + Delta-G solvation = -78.714909 kcal Electronic energy + Delta-G solvation = -20260.530935 eV Core-core repulsion = 17431.784634 eV Total energy + Delta-G solvation = -2828.746301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.47773 -39.04389 -35.98730 -35.02141 -34.55560 -32.38135 -29.98800 -27.60205 -27.28513 -27.06603 -25.48457 -23.73111 -21.69087 -20.76084 -19.31087 -18.46092 -17.69118 -17.06508 -16.62627 -16.15820 -15.78560 -15.57385 -14.89545 -14.68215 -14.25542 -13.98763 -13.76212 -13.61815 -13.48604 -13.10246 -13.01080 -12.94273 -12.85299 -12.69834 -12.60704 -12.32360 -12.30641 -12.23677 -12.00415 -11.68308 -11.58673 -11.29158 -11.14103 -11.02919 -10.60502 -10.20743 -9.44884 -8.17397 -6.27311 1.38467 1.40400 1.48956 1.89803 2.19005 2.44687 3.12073 3.64660 3.84048 3.87819 3.99720 4.20095 4.24449 4.40215 4.48420 4.51836 4.60894 4.66846 4.72117 4.78400 4.86380 4.87824 4.89339 4.94568 4.99938 5.06654 5.08927 5.12207 5.15513 5.25685 5.35490 5.39339 5.44773 5.48119 5.62194 5.70236 5.77072 5.94657 6.18461 6.61805 6.80018 7.37772 7.50695 8.88929 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028125 B = 0.006308 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.308392 B = 4437.964778 C = 4877.604113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.031 3.969 3 H 0.040 0.960 4 C -0.534 4.534 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.518 3.482 13 O -0.594 6.594 14 N -0.612 5.612 15 C 0.108 3.892 16 C -0.106 4.106 17 H 0.051 0.949 18 C -0.137 4.137 19 C -0.099 4.099 20 C -0.098 4.098 21 H 0.046 0.954 22 C -0.139 4.139 23 C 0.130 3.870 24 H 0.059 0.941 25 C -0.152 4.152 26 H 0.047 0.953 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.266 0.734 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 5.519 -17.741 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.010 3.990 3 H 0.058 0.942 4 C -0.572 4.572 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.195 1.195 11 H -0.203 1.203 12 C 0.309 3.691 13 O -0.475 6.475 14 N -0.344 5.344 15 C -0.014 4.014 16 C -0.126 4.126 17 H 0.069 0.931 18 C -0.195 4.195 19 C -0.137 4.137 20 C -0.117 4.117 21 H 0.064 0.936 22 C -0.197 4.197 23 C 0.027 3.973 24 H 0.077 0.923 25 C -0.210 4.210 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.454 5.058 -17.550 18.270 hybrid contribution 0.453 -0.707 1.456 1.681 sum 0.907 4.351 -16.095 16.697 Atomic orbital electron populations 1.21499 0.95108 0.99607 1.00755 1.18751 0.95087 0.95735 0.89475 0.94231 1.21242 1.32062 1.12531 0.91361 0.93871 1.25583 0.95142 0.95709 1.01309 1.69947 1.37040 1.23364 1.24438 0.85662 0.78686 0.78707 0.78884 1.20151 1.19548 1.20343 1.21666 0.76095 0.85742 0.85578 1.90473 1.47319 1.22963 1.86745 1.48347 1.66094 1.14391 1.05562 1.21998 0.97824 0.79890 1.01737 1.21503 0.97909 0.96181 0.96979 0.93062 1.21711 1.01998 0.93741 1.02041 1.21648 1.02310 0.93730 0.95973 1.21372 0.96812 0.96368 0.97165 0.93579 1.21827 1.02791 1.00105 0.94934 1.21170 0.96442 0.95395 0.84245 0.92280 1.22139 0.96313 1.02887 0.99624 0.93433 0.96437 0.90952 0.92486 0.89878 0.90764 0.93020 0.91038 0.91007 0.89769 0.89999 0.91029 0.93285 0.90457 0.90387 0.89098 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.41 8.61 71.98 0.62 -4.79 16 2 C 0.03 1.61 1.78 -12.29 -0.02 1.59 16 3 H 0.04 2.14 6.66 -2.38 -0.02 2.12 16 4 C -0.53 -32.18 8.35 25.60 0.21 -31.97 16 5 H 0.04 2.79 6.84 -2.91 -0.02 2.77 16 6 C 0.02 1.27 5.31 84.65 0.45 1.72 16 7 N -0.91 -51.86 11.40 21.45 0.24 -51.61 16 8 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 9 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.52 25.67 6.90 87.66 0.60 26.28 16 13 O -0.59 -34.01 14.99 -3.04 -0.05 -34.06 16 14 N -0.61 -22.90 2.68 -795.81 -2.14 -25.03 16 15 C 0.11 3.24 4.16 86.36 0.36 3.60 16 16 C -0.11 -2.54 2.87 -10.72 -0.03 -2.57 16 17 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 18 C -0.14 -2.48 9.20 71.98 0.66 -1.82 16 19 C -0.10 -1.93 4.24 30.62 0.13 -1.80 16 20 C -0.10 -2.37 2.63 -10.86 -0.03 -2.40 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.14 -2.45 8.70 71.98 0.63 -1.83 16 23 C 0.13 4.06 2.79 44.83 0.13 4.19 16 24 H 0.06 2.25 7.00 -2.38 -0.02 2.23 16 25 C -0.15 -3.64 8.50 71.98 0.61 -3.03 16 26 H 0.05 1.91 6.91 -2.39 -0.02 1.90 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 3.75 6.27 -2.38 -0.01 3.73 16 29 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 30 H 0.08 2.11 7.52 -2.39 -0.02 2.10 16 31 H 0.07 2.59 5.29 -2.39 -0.01 2.57 16 32 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.36 6.49 -2.39 -0.02 1.34 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.10 6.35 -2.38 -0.02 1.09 16 40 H 0.08 1.56 5.74 -2.39 -0.01 1.55 16 41 H 0.09 1.69 6.37 -2.38 -0.02 1.68 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.99 315.15 5.39 -64.59 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.98 Total: 10.92 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.32 Total: -12.82 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.89 Total: -76.64 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.05 Total: -34.06 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -69.99 5.39 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597568789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.122 kcal (2) G-P(sol) polarization free energy of solvation -69.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds