Wall clock time and date at job start Mon Mar 30 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47124 * 2 1 4 4 C 1.50705 * 109.47233 * 239.99734 * 2 1 3 5 5 H 1.07992 * 119.99920 * 335.18588 * 4 2 1 6 6 C 1.37874 * 119.99618 * 155.19173 * 4 2 1 7 7 N 1.31523 * 120.00313 * 355.67038 * 6 4 2 8 8 Si 1.86807 * 119.99845 * 175.40508 * 6 4 2 9 9 H 1.48500 * 109.46836 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47150 * 119.99756 * 8 6 4 11 11 H 1.48504 * 109.46700 * 239.99458 * 8 6 4 12 12 C 1.50701 * 109.46970 * 119.99996 * 2 1 3 13 13 O 1.21283 * 120.00455 * 119.99753 * 12 2 1 14 14 N 1.34782 * 120.00019 * 300.00168 * 12 2 1 15 15 C 1.46500 * 120.00224 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46878 * 299.99914 * 15 14 12 17 17 C 1.52996 * 109.46839 * 59.99793 * 15 14 12 18 18 C 1.53000 * 109.47288 * 60.00371 * 17 15 14 19 19 C 1.52998 * 109.47467 * 59.99691 * 18 17 15 20 20 C 1.53008 * 109.46934 * 300.00239 * 19 18 17 21 21 C 1.52998 * 109.47122 * 180.02562 * 15 14 12 22 22 H 1.08999 * 109.47116 * 180.02562 * 21 15 14 23 23 C 1.52996 * 109.47026 * 59.99812 * 21 15 14 24 24 H 1.09002 * 109.47160 * 175.20542 * 1 2 3 25 25 H 1.08998 * 109.47529 * 295.21448 * 1 2 3 26 26 H 1.09007 * 109.46877 * 55.21321 * 1 2 3 27 27 H 0.96993 * 119.99884 * 5.15982 * 7 6 4 28 28 H 0.97001 * 119.99650 * 0.02562 * 14 12 2 29 29 H 1.08997 * 109.47106 * 59.99934 * 16 15 14 30 30 H 1.08999 * 109.46585 * 179.97438 * 16 15 14 31 31 H 1.08993 * 109.47232 * 299.99908 * 16 15 14 32 32 H 1.09009 * 109.47187 * 179.97438 * 17 15 14 33 33 H 1.08997 * 109.47555 * 299.99675 * 17 15 14 34 34 H 1.08999 * 109.47034 * 299.99502 * 18 17 15 35 35 H 1.09001 * 109.47516 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47389 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47148 * 59.99881 * 19 18 17 38 38 H 1.08999 * 109.46911 * 299.99787 * 20 19 18 39 39 H 1.08997 * 109.47131 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47067 * 60.00150 * 23 21 15 41 41 H 1.09007 * 109.46901 * 179.97438 * 23 21 15 42 42 H 1.08996 * 109.47409 * 299.99507 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 1.4120 -1.4464 -1.7201 6 6 3.2840 -0.4209 -1.7309 7 7 4.0051 0.5348 -1.1863 8 14 3.9588 -1.3909 -3.1778 9 1 2.9621 -2.4076 -3.6000 10 1 4.2337 -0.4674 -4.3077 11 1 5.2171 -2.0690 -2.7752 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1193 14 7 1.7066 -0.2500 2.4546 15 6 2.1944 -0.9409 3.6508 16 6 1.6838 -2.3831 3.6506 17 6 3.7244 -0.9415 3.6511 18 6 4.2350 0.5008 3.6513 19 6 3.7251 1.2222 4.9005 20 6 2.1950 1.2228 4.9002 21 6 1.6839 -0.2199 4.9000 22 1 2.0472 -0.7337 5.7900 23 6 0.1539 -0.2198 4.8993 24 1 -0.3633 -1.0241 -0.0859 25 1 -0.3634 0.4378 0.9297 26 1 -0.3633 0.5864 -0.8441 27 1 3.6894 0.9851 -0.3873 28 1 1.1486 0.5385 2.5436 29 1 2.0471 -2.8970 2.7606 30 1 2.0471 -2.8973 4.5403 31 1 0.5939 -2.3827 3.6503 32 1 4.0874 -1.4552 4.5414 33 1 4.0877 -1.4554 2.7612 34 1 3.8721 1.0149 2.7613 35 1 5.3250 0.5004 3.6520 36 1 4.0885 2.2498 4.9005 37 1 4.0880 0.7081 5.7905 38 1 1.8321 1.7369 4.0102 39 1 1.8317 1.7363 5.7904 40 1 -0.2094 -1.2474 4.8989 41 1 -0.2097 0.2934 5.7896 42 1 -0.2090 0.2943 4.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597758893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:16 Heat of formation + Delta-G solvation = -71.137135 kcal Electronic energy + Delta-G solvation = -20711.460626 eV Core-core repulsion = 17883.042922 eV Total energy + Delta-G solvation = -2828.417704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17004 -37.44179 -33.77010 -33.39162 -32.21517 -31.27717 -29.82909 -27.08635 -25.39088 -24.57269 -22.94515 -21.71107 -20.65001 -19.83101 -18.30134 -17.02499 -15.88636 -15.11105 -14.73259 -14.16558 -14.07149 -13.94735 -13.73586 -13.63936 -13.19252 -12.81375 -12.50693 -11.99806 -11.74736 -11.69822 -11.61397 -11.55595 -11.34553 -11.19744 -11.03499 -10.95090 -10.71247 -10.64252 -10.31649 -10.06541 -9.86569 -9.76420 -9.70031 -8.71783 -8.31930 -8.11111 -8.06881 -6.30414 -4.00561 3.49548 3.57062 3.69014 4.01208 4.10389 4.61320 4.77736 4.85331 4.90677 5.27360 5.33386 5.44852 5.53901 5.56632 5.63911 5.74938 5.75215 5.87798 5.93745 5.99150 6.04720 6.13461 6.20068 6.20520 6.23309 6.26577 6.37734 6.39346 6.46019 6.51421 6.62404 6.72444 6.79253 6.84694 7.09296 7.20631 7.46285 8.03913 8.46722 8.62516 8.93422 9.58915 9.71068 11.08594 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.007278 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.327412 B = 3846.192849 C = 4153.029863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.006 3.994 3 H 0.053 0.947 4 C -0.569 4.569 5 H 0.051 0.949 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 1.076 2.924 9 H -0.290 1.290 10 H -0.289 1.289 11 H -0.288 1.288 12 C 0.509 3.491 13 O -0.525 6.525 14 N -0.739 5.739 15 C 0.184 3.816 16 C -0.163 4.163 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.091 4.091 22 H 0.076 0.924 23 C -0.148 4.148 24 H 0.043 0.957 25 H 0.028 0.972 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.387 0.613 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 1.283 13.324 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.016 4.016 3 H 0.071 0.929 4 C -0.607 4.607 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.905 3.095 9 H -0.216 1.216 10 H -0.216 1.216 11 H -0.214 1.214 12 C 0.297 3.703 13 O -0.399 6.399 14 N -0.394 5.394 15 C 0.098 3.902 16 C -0.221 4.221 17 C -0.167 4.167 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.110 4.110 22 H 0.094 0.906 23 C -0.206 4.206 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.221 0.779 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.370 0.435 12.171 12.637 hybrid contribution -1.502 0.449 1.300 2.037 sum -4.873 0.883 13.471 14.353 Atomic orbital electron populations 1.21642 0.96806 1.00588 0.99051 1.19128 0.92769 0.97684 0.91999 0.92943 1.21611 1.03455 1.25433 1.10157 0.93024 1.25769 0.93586 0.95876 1.02315 1.70761 1.40829 1.21373 1.21241 0.83453 0.75772 0.75460 0.74822 1.21559 1.21584 1.21395 1.22486 0.78948 0.84860 0.83961 1.90455 1.36626 1.26408 1.86384 1.46584 1.55318 1.32162 1.05381 1.20087 0.93431 0.91845 0.84876 1.22245 1.00608 0.96363 1.02848 1.21922 0.94886 0.96987 1.02879 1.21444 0.99683 0.96188 0.97966 1.21528 0.95384 1.00063 0.98411 1.21592 0.95934 0.96028 1.01531 1.21378 0.95615 0.96294 0.97743 0.90605 1.21883 0.95208 1.02056 1.01420 0.93746 0.95341 0.92949 0.92349 0.77919 0.90154 0.93102 0.92911 0.92633 0.89339 0.91447 0.92617 0.92439 0.92523 0.91855 0.92317 0.92239 0.92976 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.11 37.16 0.34 -2.14 16 2 C 0.01 0.14 2.35 -92.92 -0.22 -0.08 16 3 H 0.05 1.34 6.69 -51.93 -0.35 1.00 16 4 C -0.57 -16.18 7.55 -34.44 -0.26 -16.44 16 5 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 6 C 0.03 0.86 5.46 -17.82 -0.10 0.76 16 7 N -0.91 -27.57 13.62 55.43 0.76 -26.81 16 8 Si 1.08 26.57 29.91 -169.99 -5.08 21.48 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 C 0.51 11.82 6.57 -10.98 -0.07 11.75 16 13 O -0.52 -14.10 12.24 5.55 0.07 -14.03 16 14 N -0.74 -13.26 3.60 -47.61 -0.17 -13.43 16 15 C 0.18 2.92 0.35 -131.82 -0.05 2.88 16 16 C -0.16 -2.63 8.05 37.16 0.30 -2.33 16 17 C -0.13 -2.21 4.52 -26.73 -0.12 -2.33 16 18 C -0.12 -1.87 5.77 -26.73 -0.15 -2.02 16 19 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 20 C -0.11 -1.35 5.03 -26.70 -0.13 -1.48 16 21 C -0.09 -1.13 2.01 -90.59 -0.18 -1.31 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.15 -1.65 8.67 37.16 0.32 -1.33 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.47 7.43 -51.93 -0.39 0.09 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.27 7.97 6.67 -40.82 -0.27 7.70 16 28 H 0.39 6.18 5.52 -40.82 -0.23 5.95 16 29 H 0.08 1.60 6.17 -51.93 -0.32 1.28 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.80 6.43 -51.93 -0.33 0.46 16 32 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.09 1.91 6.17 -51.93 -0.32 1.59 16 34 H 0.07 1.27 7.60 -51.93 -0.39 0.88 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.80 6.86 -51.93 -0.36 0.45 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 41 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.06 0.65 6.86 -51.93 -0.36 0.29 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -31.60 314.11 -7.26 -38.86 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.08 Total: 4.92 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.48 Total: -15.72 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.58 Total: -40.24 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.08 Total: 21.48 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.60 -7.26 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.273 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds