Wall clock time and date at job start Mon Mar 30 2020 06:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47124 * 2 1 4 4 C 1.50705 * 109.47233 * 239.99734 * 2 1 3 5 5 H 1.07992 * 119.99920 * 335.18588 * 4 2 1 6 6 C 1.37874 * 119.99618 * 155.19173 * 4 2 1 7 7 N 1.31523 * 120.00313 * 355.67038 * 6 4 2 8 8 Si 1.86807 * 119.99845 * 175.40508 * 6 4 2 9 9 H 1.48500 * 109.46836 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47150 * 119.99756 * 8 6 4 11 11 H 1.48504 * 109.46700 * 239.99458 * 8 6 4 12 12 C 1.50701 * 109.46970 * 119.99996 * 2 1 3 13 13 O 1.21283 * 120.00455 * 119.99753 * 12 2 1 14 14 N 1.34782 * 120.00019 * 300.00168 * 12 2 1 15 15 C 1.46500 * 120.00224 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46878 * 299.99914 * 15 14 12 17 17 C 1.52996 * 109.46839 * 59.99793 * 15 14 12 18 18 C 1.53000 * 109.47288 * 60.00371 * 17 15 14 19 19 C 1.52998 * 109.47467 * 59.99691 * 18 17 15 20 20 C 1.53008 * 109.46934 * 300.00239 * 19 18 17 21 21 C 1.52998 * 109.47122 * 180.02562 * 15 14 12 22 22 H 1.08999 * 109.47116 * 180.02562 * 21 15 14 23 23 C 1.52996 * 109.47026 * 59.99812 * 21 15 14 24 24 H 1.09002 * 109.47160 * 175.20542 * 1 2 3 25 25 H 1.08998 * 109.47529 * 295.21448 * 1 2 3 26 26 H 1.09007 * 109.46877 * 55.21321 * 1 2 3 27 27 H 0.96993 * 119.99884 * 5.15982 * 7 6 4 28 28 H 0.97001 * 119.99650 * 0.02562 * 14 12 2 29 29 H 1.08997 * 109.47106 * 59.99934 * 16 15 14 30 30 H 1.08999 * 109.46585 * 179.97438 * 16 15 14 31 31 H 1.08993 * 109.47232 * 299.99908 * 16 15 14 32 32 H 1.09009 * 109.47187 * 179.97438 * 17 15 14 33 33 H 1.08997 * 109.47555 * 299.99675 * 17 15 14 34 34 H 1.08999 * 109.47034 * 299.99502 * 18 17 15 35 35 H 1.09001 * 109.47516 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47389 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47148 * 59.99881 * 19 18 17 38 38 H 1.08999 * 109.46911 * 299.99787 * 20 19 18 39 39 H 1.08997 * 109.47131 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.47067 * 60.00150 * 23 21 15 41 41 H 1.09007 * 109.46901 * 179.97438 * 23 21 15 42 42 H 1.08996 * 109.47409 * 299.99507 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 1.4120 -1.4464 -1.7201 6 6 3.2840 -0.4209 -1.7309 7 7 4.0051 0.5348 -1.1863 8 14 3.9588 -1.3909 -3.1778 9 1 2.9621 -2.4076 -3.6000 10 1 4.2337 -0.4674 -4.3077 11 1 5.2171 -2.0690 -2.7752 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1193 14 7 1.7066 -0.2500 2.4546 15 6 2.1944 -0.9409 3.6508 16 6 1.6838 -2.3831 3.6506 17 6 3.7244 -0.9415 3.6511 18 6 4.2350 0.5008 3.6513 19 6 3.7251 1.2222 4.9005 20 6 2.1950 1.2228 4.9002 21 6 1.6839 -0.2199 4.9000 22 1 2.0472 -0.7337 5.7900 23 6 0.1539 -0.2198 4.8993 24 1 -0.3633 -1.0241 -0.0859 25 1 -0.3634 0.4378 0.9297 26 1 -0.3633 0.5864 -0.8441 27 1 3.6894 0.9851 -0.3873 28 1 1.1486 0.5385 2.5436 29 1 2.0471 -2.8970 2.7606 30 1 2.0471 -2.8973 4.5403 31 1 0.5939 -2.3827 3.6503 32 1 4.0874 -1.4552 4.5414 33 1 4.0877 -1.4554 2.7612 34 1 3.8721 1.0149 2.7613 35 1 5.3250 0.5004 3.6520 36 1 4.0885 2.2498 4.9005 37 1 4.0880 0.7081 5.7905 38 1 1.8321 1.7369 4.0102 39 1 1.8317 1.7363 5.7904 40 1 -0.2094 -1.2474 4.8989 41 1 -0.2097 0.2934 5.7896 42 1 -0.2090 0.2943 4.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597758893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:16 Heat of formation + Delta-G solvation = -90.349334 kcal Electronic energy + Delta-G solvation = -20712.293729 eV Core-core repulsion = 17883.042922 eV Total energy + Delta-G solvation = -2829.250807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60038 -39.07449 -35.76877 -34.81395 -33.48295 -33.00942 -31.45152 -28.21089 -26.66944 -26.51314 -24.76524 -22.97526 -21.82414 -21.42105 -19.80894 -18.96011 -17.68139 -16.60451 -16.03975 -15.87541 -15.66225 -15.44546 -15.12523 -14.99517 -14.75173 -14.39400 -13.83101 -13.62614 -13.23332 -13.02990 -12.90229 -12.84515 -12.78825 -12.68083 -12.59121 -12.47392 -12.27155 -11.99693 -11.81125 -11.69251 -11.45767 -11.04196 -10.97081 -10.83978 -10.47658 -9.95738 -9.70395 -8.60674 -6.29956 1.47448 1.58785 1.73537 2.16810 2.49014 2.61796 3.30117 3.65884 3.79529 3.80845 4.13982 4.16532 4.32690 4.44903 4.48531 4.50363 4.57482 4.62997 4.65685 4.67497 4.76669 4.82558 4.84852 4.91843 4.99479 5.07739 5.15748 5.17030 5.20468 5.25896 5.29353 5.37739 5.39392 5.46805 5.53189 5.55747 5.95242 5.96498 6.18112 6.58399 7.02139 7.47647 7.80937 8.79213 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.026908 B = 0.007278 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.327412 B = 3846.192849 C = 4153.029863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.005 4.005 3 H 0.037 0.963 4 C -0.580 4.580 5 H 0.039 0.961 6 C -0.022 4.022 7 N -0.932 5.932 8 Si 1.113 2.887 9 H -0.275 1.275 10 H -0.271 1.271 11 H -0.292 1.292 12 C 0.511 3.489 13 O -0.569 6.569 14 N -0.718 5.718 15 C 0.179 3.821 16 C -0.158 4.158 17 C -0.128 4.128 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.082 4.082 22 H 0.097 0.903 23 C -0.147 4.147 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.255 0.745 28 H 0.399 0.601 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.030 0.970 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 1.814 15.795 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.618 4.618 5 H 0.058 0.942 6 C -0.221 4.221 7 N -0.569 5.569 8 Si 0.936 3.064 9 H -0.200 1.200 10 H -0.196 1.196 11 H -0.219 1.219 12 C 0.299 3.701 13 O -0.446 6.446 14 N -0.373 5.373 15 C 0.094 3.906 16 C -0.216 4.216 17 C -0.166 4.166 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.101 4.101 22 H 0.115 0.885 23 C -0.204 4.204 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.235 0.765 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.875 1.001 14.675 15.496 hybrid contribution -1.063 0.272 0.592 1.246 sum -5.938 1.274 15.267 16.431 Atomic orbital electron populations 1.21537 0.93461 1.00722 1.01370 1.19153 0.95664 0.96256 0.91598 0.94480 1.21952 1.03309 1.24953 1.11626 0.94228 1.27018 0.94287 0.96180 1.04579 1.70869 1.41465 1.22925 1.21659 0.82990 0.75326 0.75007 0.73043 1.19996 1.19618 1.21853 1.21990 0.78588 0.84218 0.85291 1.90453 1.38558 1.28396 1.87236 1.46252 1.54255 1.32040 1.04719 1.20337 0.92578 0.92246 0.85482 1.22185 1.01293 0.96206 1.01938 1.21871 0.96085 0.97240 1.01400 1.21413 0.99394 0.95716 0.98668 1.21494 0.96190 1.00232 0.96735 1.21624 0.95029 0.95791 1.02543 1.21360 0.96710 0.96216 0.95817 0.88517 1.21883 0.93777 1.02380 1.02397 0.94316 0.91572 0.92418 0.93508 0.76466 0.94528 0.90520 0.91685 0.90192 0.94663 0.95064 0.93236 0.91478 0.90479 0.92988 0.89126 0.92277 0.90401 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.48 9.11 71.98 0.66 -3.83 16 2 C -0.01 -0.25 2.35 -12.29 -0.03 -0.28 16 3 H 0.04 1.97 6.69 -2.39 -0.02 1.96 16 4 C -0.58 -34.04 7.55 25.60 0.19 -33.85 16 5 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 6 C -0.02 -1.31 5.46 84.65 0.46 -0.85 16 7 N -0.93 -58.80 13.62 21.45 0.29 -58.51 16 8 Si 1.11 54.59 29.91 68.60 2.05 56.65 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 12 C 0.51 24.44 6.57 87.66 0.58 25.02 16 13 O -0.57 -32.12 12.24 -3.04 -0.04 -32.16 16 14 N -0.72 -25.59 3.60 -422.92 -1.52 -27.11 16 15 C 0.18 5.47 0.35 3.60 0.00 5.47 16 16 C -0.16 -4.96 8.05 71.98 0.58 -4.38 16 17 C -0.13 -4.40 4.52 30.59 0.14 -4.26 16 18 C -0.11 -3.70 5.77 30.59 0.18 -3.53 16 19 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 20 C -0.11 -2.24 5.03 30.62 0.15 -2.09 16 21 C -0.08 -1.72 2.01 -10.78 -0.02 -1.74 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 23 C -0.15 -2.63 8.67 71.98 0.62 -2.00 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 2.08 7.43 -2.39 -0.02 2.06 16 26 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.25 16.08 6.67 -92.71 -0.62 15.46 16 28 H 0.40 12.22 5.52 -92.71 -0.51 11.71 16 29 H 0.04 1.48 6.17 -2.39 -0.01 1.46 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.84 6.43 -2.39 -0.02 1.83 16 32 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.03 1.59 6.17 -2.39 -0.01 1.58 16 34 H 0.03 1.21 7.60 -2.39 -0.02 1.19 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.16 6.86 -2.39 -0.02 1.15 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.08 6.43 -2.39 -0.02 1.06 16 41 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.05 0.95 6.86 -2.39 -0.02 0.94 16 Total: -1.00 -73.02 314.11 5.10 -67.92 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.63 Total: 21.82 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 3.69 Total: -28.60 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -1.23 Total: -85.62 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.04 Total: -32.16 kcal Atomic # 14 Polarization: 54.59 SS G_CDS: 2.05 Total: 56.65 kcal Total: -73.02 5.10 -67.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597758893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.431 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds