Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.43582 * 2 1 4 4 C 1.54885 * 110.48866 * 122.54501 * 2 1 3 5 5 C 1.54885 * 102.74927 * 80.73536 * 4 2 1 6 6 C 1.54263 * 104.19724 * 37.94489 * 5 4 2 7 7 C 1.52998 * 110.03421 * 95.67336 * 6 5 4 8 8 C 1.52995 * 110.03259 * 217.05681 * 6 5 4 9 9 N 1.46504 * 109.47459 * 298.54312 * 8 6 5 10 10 C 1.34767 * 120.00531 * 179.97438 * 9 8 6 11 11 O 1.21690 * 119.99696 * 0.02562 * 10 9 8 12 12 C 1.46371 * 120.00216 * 179.97438 * 10 9 8 13 13 H 1.07993 * 120.00337 * 0.02562 * 12 10 9 14 14 C 1.40051 * 120.00047 * 180.02562 * 12 10 9 15 15 N 1.30669 * 119.99929 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00066 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47173 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47646 * 119.99633 * 16 14 12 19 19 H 1.48505 * 109.47099 * 239.99980 * 16 14 12 20 20 C 1.53876 * 106.59817 * 336.38872 * 6 5 4 21 21 C 1.52996 * 110.03384 * 240.71400 * 20 6 5 22 22 C 1.53001 * 110.03157 * 119.28156 * 20 6 5 23 23 H 1.09002 * 109.47153 * 298.90883 * 1 2 3 24 24 H 1.09001 * 109.46832 * 178.91074 * 1 2 3 25 25 H 1.09004 * 109.47261 * 58.91055 * 1 2 3 26 26 H 1.09000 * 110.75723 * 199.05233 * 4 2 1 27 27 H 1.09004 * 110.75523 * 322.41910 * 4 2 1 28 28 H 1.09001 * 110.48371 * 156.62126 * 5 4 2 29 29 H 1.09003 * 110.48589 * 279.13016 * 5 4 2 30 30 H 1.09005 * 109.47231 * 61.45471 * 7 6 5 31 31 H 1.09000 * 109.47345 * 181.45573 * 7 6 5 32 32 H 1.09005 * 109.47267 * 301.45858 * 7 6 5 33 33 H 1.08997 * 109.47631 * 58.54344 * 8 6 5 34 34 H 1.09001 * 109.47289 * 178.54500 * 8 6 5 35 35 H 0.97005 * 119.99368 * 359.97438 * 9 8 6 36 36 H 0.97006 * 119.99926 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.46929 * 178.61543 * 21 20 6 38 38 H 1.08992 * 109.47582 * 298.62434 * 21 20 6 39 39 H 1.09001 * 109.46758 * 58.62092 * 21 20 6 40 40 H 1.08992 * 109.47682 * 301.38429 * 22 20 6 41 41 H 1.09009 * 109.46881 * 61.38284 * 22 20 6 42 42 H 1.09007 * 109.47004 * 181.37683 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0721 -0.7805 1.2230 5 6 1.9639 -2.2554 0.7626 6 6 2.3458 -2.2143 -0.7314 7 6 3.8288 -2.5493 -0.9028 8 6 1.4900 -3.2086 -1.5186 9 7 1.7388 -4.5653 -1.0249 10 6 1.0904 -5.6117 -1.5734 11 8 0.2985 -5.4296 -2.4792 12 6 1.3395 -6.9672 -1.0804 13 1 2.0426 -7.1288 -0.2768 14 6 0.6660 -8.0546 -1.6508 15 7 -0.1851 -7.8590 -2.6228 16 14 0.9834 -9.7843 -1.0212 17 1 1.9827 -9.7361 0.0762 18 1 -0.2843 -10.3661 -0.5115 19 1 1.5046 -10.6261 -2.1280 20 6 2.0699 -0.7803 -1.2164 21 6 1.0253 -0.7969 -2.3342 22 6 3.3650 -0.1384 -1.7180 23 1 -0.3633 0.4968 0.8996 24 1 -0.3633 -1.0275 -0.0195 25 1 -0.3634 0.5307 -0.8801 26 1 3.1098 -0.5133 1.4228 27 1 1.4506 -0.6032 2.1008 28 1 2.6630 -2.8806 1.3180 29 1 0.9445 -2.6204 0.8881 30 1 4.0186 -3.5574 -0.5341 31 1 4.0946 -2.4924 -1.9583 32 1 4.4299 -1.8367 -0.3378 33 1 0.4360 -2.9627 -1.3896 34 1 1.7491 -3.1536 -2.5760 35 1 2.3704 -4.7104 -0.3030 36 1 -0.6519 -8.6121 -3.0176 37 1 0.8189 0.2246 -2.6537 38 1 1.4056 -1.3719 -3.1784 39 1 0.1072 -1.2551 -1.9666 40 1 4.1017 -0.1309 -0.9147 41 1 3.7520 -0.7116 -2.5606 42 1 3.1639 0.8846 -2.0362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597981507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -64.659466 kcal Electronic energy + Delta-G solvation = -20117.621979 eV Core-core repulsion = 17289.485168 eV Total energy + Delta-G solvation = -2828.136811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45962 -36.99216 -33.87659 -32.43183 -32.26719 -31.22194 -28.60208 -27.52505 -26.31415 -24.40565 -23.73296 -22.87962 -20.07053 -18.94122 -17.68604 -16.66434 -15.64177 -15.39275 -15.18307 -14.35272 -14.23071 -13.68483 -13.63913 -13.32625 -12.89826 -12.69443 -12.53750 -12.32372 -12.02628 -11.78007 -11.67543 -11.45969 -11.40949 -11.12703 -11.03809 -10.82282 -10.48816 -10.42249 -10.34850 -10.23867 -10.17308 -10.00360 -9.92951 -9.80219 -8.80828 -7.52882 -7.35082 -6.13002 -4.57772 3.15524 3.23597 3.28056 4.14802 4.55918 4.59547 4.65800 4.77730 5.13085 5.28631 5.37752 5.43531 5.45871 5.46548 5.55737 5.61580 5.68591 5.77537 5.86963 5.88642 5.91275 5.94474 6.00576 6.06104 6.13297 6.14422 6.26960 6.30110 6.35268 6.39217 6.43321 6.51771 6.59959 6.63893 6.79328 6.84311 7.48439 8.02183 8.22094 8.41166 9.08330 9.64201 10.66777 10.86961 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034388 B = 0.005250 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.031270 B = 5332.478748 C = 5447.087916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.065 4.065 7 C -0.137 4.137 8 C 0.147 3.853 9 N -0.766 5.766 10 C 0.555 3.445 11 O -0.583 6.583 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.905 3.095 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.051 4.051 21 C -0.147 4.147 22 C -0.138 4.138 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.378 0.622 36 H 0.266 0.734 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 14.313 5.983 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.066 4.066 7 C -0.194 4.194 8 C 0.022 3.978 9 N -0.421 5.421 10 C 0.358 3.642 11 O -0.466 6.466 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.399 5.399 16 Si 0.730 3.270 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.052 4.052 21 C -0.204 4.204 22 C -0.195 4.195 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.209 0.791 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.204 14.373 5.157 16.133 hybrid contribution 0.467 -0.957 0.624 1.234 sum 5.671 13.416 5.781 15.670 Atomic orbital electron populations 1.21889 0.95136 1.02258 1.00959 1.21975 0.95607 0.98303 0.94488 0.91464 1.22526 1.00278 0.95731 0.97129 1.22443 1.01945 0.95911 0.94664 1.21406 0.95793 0.94111 0.95274 1.21968 0.94839 1.01004 1.01573 1.21118 0.97353 0.82840 0.96493 1.46164 1.49050 1.05455 1.41468 1.18190 0.79858 0.84138 0.82007 1.90591 1.38256 1.85517 1.32232 1.20930 1.26628 0.90189 1.20591 0.91573 1.25697 0.93483 1.00299 0.93674 1.70039 1.19473 1.31456 1.18885 0.86359 0.78770 0.82520 0.79335 1.18834 1.20218 1.20224 1.21125 0.95258 0.93876 0.94907 1.22106 0.99367 1.00821 0.98112 1.21992 0.96949 0.99585 1.00975 0.93374 0.92029 0.92516 0.91948 0.91955 0.91817 0.91143 0.92568 0.92565 0.92842 0.93315 0.93547 0.79060 0.92286 0.93370 0.92337 0.91426 0.92475 0.92354 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.82 37.16 0.29 -1.36 16 2 C -0.09 -0.96 3.01 -88.96 -0.27 -1.22 16 3 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 4 C -0.12 -1.33 6.39 -24.74 -0.16 -1.49 16 5 C -0.11 -1.52 4.94 -25.08 -0.12 -1.64 16 6 C -0.07 -0.94 0.66 -153.39 -0.10 -1.04 16 7 C -0.14 -1.85 7.01 37.16 0.26 -1.59 16 8 C 0.15 2.85 3.25 -4.04 -0.01 2.84 16 9 N -0.77 -17.31 5.04 -61.72 -0.31 -17.62 16 10 C 0.55 16.05 7.75 -12.99 -0.10 15.95 16 11 O -0.58 -19.23 15.02 5.20 0.08 -19.15 16 12 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 13 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 14 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 15 N -0.77 -23.49 11.83 55.55 0.66 -22.84 16 16 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 17 H -0.26 -5.76 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.05 -0.64 0.86 -153.39 -0.13 -0.77 16 21 C -0.15 -1.98 6.11 37.16 0.23 -1.75 16 22 C -0.14 -1.52 7.19 37.16 0.27 -1.25 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.81 6.80 -51.93 -0.35 0.46 16 25 H 0.06 0.61 6.94 -51.93 -0.36 0.25 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 29 H 0.07 1.08 7.42 -51.93 -0.39 0.69 16 30 H 0.06 0.81 6.90 -51.93 -0.36 0.45 16 31 H 0.06 0.78 6.86 -51.93 -0.36 0.42 16 32 H 0.05 0.62 6.62 -51.93 -0.34 0.27 16 33 H 0.05 1.02 6.62 -51.93 -0.34 0.68 16 34 H 0.05 0.98 6.86 -51.93 -0.36 0.63 16 35 H 0.38 7.62 6.97 -40.82 -0.28 7.34 16 36 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 37 H 0.05 0.56 7.81 -51.93 -0.41 0.16 16 38 H 0.06 0.86 6.86 -51.93 -0.36 0.50 16 39 H 0.07 0.99 4.95 -51.93 -0.26 0.74 16 40 H 0.06 0.59 6.62 -51.93 -0.34 0.24 16 41 H 0.06 0.67 6.86 -51.92 -0.36 0.31 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -33.39 312.19 -7.09 -40.48 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.91 Total: 5.98 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.29 Total: -6.97 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.35 Total: -40.46 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.08 Total: -19.15 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.39 -7.09 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597981507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.183 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds