Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.43582 * 2 1 4 4 C 1.54885 * 110.48866 * 122.54501 * 2 1 3 5 5 C 1.54885 * 102.74927 * 80.73536 * 4 2 1 6 6 C 1.54263 * 104.19724 * 37.94489 * 5 4 2 7 7 C 1.52998 * 110.03421 * 95.67336 * 6 5 4 8 8 C 1.52995 * 110.03259 * 217.05681 * 6 5 4 9 9 N 1.46504 * 109.47459 * 298.54312 * 8 6 5 10 10 C 1.34767 * 120.00531 * 179.97438 * 9 8 6 11 11 O 1.21690 * 119.99696 * 0.02562 * 10 9 8 12 12 C 1.46371 * 120.00216 * 179.97438 * 10 9 8 13 13 H 1.07993 * 120.00337 * 0.02562 * 12 10 9 14 14 C 1.40051 * 120.00047 * 180.02562 * 12 10 9 15 15 N 1.30669 * 119.99929 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00066 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47173 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47646 * 119.99633 * 16 14 12 19 19 H 1.48505 * 109.47099 * 239.99980 * 16 14 12 20 20 C 1.53876 * 106.59817 * 336.38872 * 6 5 4 21 21 C 1.52996 * 110.03384 * 240.71400 * 20 6 5 22 22 C 1.53001 * 110.03157 * 119.28156 * 20 6 5 23 23 H 1.09002 * 109.47153 * 298.90883 * 1 2 3 24 24 H 1.09001 * 109.46832 * 178.91074 * 1 2 3 25 25 H 1.09004 * 109.47261 * 58.91055 * 1 2 3 26 26 H 1.09000 * 110.75723 * 199.05233 * 4 2 1 27 27 H 1.09004 * 110.75523 * 322.41910 * 4 2 1 28 28 H 1.09001 * 110.48371 * 156.62126 * 5 4 2 29 29 H 1.09003 * 110.48589 * 279.13016 * 5 4 2 30 30 H 1.09005 * 109.47231 * 61.45471 * 7 6 5 31 31 H 1.09000 * 109.47345 * 181.45573 * 7 6 5 32 32 H 1.09005 * 109.47267 * 301.45858 * 7 6 5 33 33 H 1.08997 * 109.47631 * 58.54344 * 8 6 5 34 34 H 1.09001 * 109.47289 * 178.54500 * 8 6 5 35 35 H 0.97005 * 119.99368 * 359.97438 * 9 8 6 36 36 H 0.97006 * 119.99926 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.46929 * 178.61543 * 21 20 6 38 38 H 1.08992 * 109.47582 * 298.62434 * 21 20 6 39 39 H 1.09001 * 109.46758 * 58.62092 * 21 20 6 40 40 H 1.08992 * 109.47682 * 301.38429 * 22 20 6 41 41 H 1.09009 * 109.46881 * 61.38284 * 22 20 6 42 42 H 1.09007 * 109.47004 * 181.37683 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0721 -0.7805 1.2230 5 6 1.9639 -2.2554 0.7626 6 6 2.3458 -2.2143 -0.7314 7 6 3.8288 -2.5493 -0.9028 8 6 1.4900 -3.2086 -1.5186 9 7 1.7388 -4.5653 -1.0249 10 6 1.0904 -5.6117 -1.5734 11 8 0.2985 -5.4296 -2.4792 12 6 1.3395 -6.9672 -1.0804 13 1 2.0426 -7.1288 -0.2768 14 6 0.6660 -8.0546 -1.6508 15 7 -0.1851 -7.8590 -2.6228 16 14 0.9834 -9.7843 -1.0212 17 1 1.9827 -9.7361 0.0762 18 1 -0.2843 -10.3661 -0.5115 19 1 1.5046 -10.6261 -2.1280 20 6 2.0699 -0.7803 -1.2164 21 6 1.0253 -0.7969 -2.3342 22 6 3.3650 -0.1384 -1.7180 23 1 -0.3633 0.4968 0.8996 24 1 -0.3633 -1.0275 -0.0195 25 1 -0.3634 0.5307 -0.8801 26 1 3.1098 -0.5133 1.4228 27 1 1.4506 -0.6032 2.1008 28 1 2.6630 -2.8806 1.3180 29 1 0.9445 -2.6204 0.8881 30 1 4.0186 -3.5574 -0.5341 31 1 4.0946 -2.4924 -1.9583 32 1 4.4299 -1.8367 -0.3378 33 1 0.4360 -2.9627 -1.3896 34 1 1.7491 -3.1536 -2.5760 35 1 2.3704 -4.7104 -0.3030 36 1 -0.6519 -8.6121 -3.0176 37 1 0.8189 0.2246 -2.6537 38 1 1.4056 -1.3719 -3.1784 39 1 0.1072 -1.2551 -1.9666 40 1 4.1017 -0.1309 -0.9147 41 1 3.7520 -0.7116 -2.5606 42 1 3.1639 0.8846 -2.0362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597981507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -86.599289 kcal Electronic energy + Delta-G solvation = -20118.573361 eV Core-core repulsion = 17289.485168 eV Total energy + Delta-G solvation = -2829.088193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60808 -39.10434 -35.54045 -34.54081 -33.33755 -32.73347 -29.99832 -28.56328 -28.25505 -25.85065 -24.72360 -24.09745 -21.91012 -20.25572 -19.51648 -18.09657 -17.42562 -16.75568 -16.51759 -15.95086 -15.76602 -15.32926 -15.07178 -14.47570 -14.33005 -13.97960 -13.85675 -13.66075 -13.37261 -13.18688 -12.92996 -12.78203 -12.69365 -12.65105 -12.59374 -12.35690 -12.25332 -11.98624 -11.50070 -11.33163 -11.28003 -11.13000 -11.07473 -10.96901 -10.93695 -9.84913 -9.40339 -8.29105 -6.85458 1.39023 1.39473 1.57470 2.24498 2.47798 3.16803 3.54092 3.60620 3.67954 3.75724 4.21990 4.32077 4.34538 4.36380 4.47126 4.49245 4.60371 4.70078 4.73133 4.84374 4.86049 4.91988 4.95764 4.98468 5.02610 5.09754 5.15787 5.23221 5.24672 5.31380 5.35180 5.36221 5.39450 5.49661 5.54029 5.62524 5.70962 5.88669 6.25680 6.33162 6.86669 7.58410 8.50962 8.68579 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034388 B = 0.005250 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.031270 B = 5332.478748 C = 5447.087916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.092 0.908 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.059 4.059 7 C -0.134 4.134 8 C 0.154 3.846 9 N -0.750 5.750 10 C 0.536 3.464 11 O -0.636 6.636 12 C -0.574 4.574 13 H 0.086 0.914 14 C 0.027 3.973 15 N -0.824 5.824 16 Si 0.999 3.001 17 H -0.246 1.246 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.050 4.050 21 C -0.146 4.146 22 C -0.135 4.135 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 15.095 8.065 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.110 0.890 4 C -0.147 4.147 5 C -0.151 4.151 6 C -0.059 4.059 7 C -0.191 4.191 8 C 0.029 3.971 9 N -0.405 5.405 10 C 0.340 3.660 11 O -0.524 6.524 12 C -0.610 4.610 13 H 0.104 0.896 14 C -0.187 4.187 15 N -0.454 5.454 16 Si 0.818 3.182 17 H -0.169 1.169 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.051 4.051 21 C -0.203 4.203 22 C -0.191 4.191 23 H 0.082 0.918 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.226 0.774 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.250 15.197 7.278 18.343 hybrid contribution -0.204 -1.149 -0.063 1.169 sum 7.046 14.048 7.214 17.293 Atomic orbital electron populations 1.21879 0.95756 1.00681 1.01906 1.21988 0.95089 0.99296 0.93555 0.88979 1.22511 1.01790 0.93154 0.97242 1.22423 1.00488 0.98303 0.93931 1.21385 0.95428 0.93860 0.95228 1.21964 0.94166 1.01256 1.01703 1.21166 0.97297 0.82536 0.96079 1.45845 1.47961 1.05728 1.40935 1.18640 0.79772 0.85890 0.81745 1.90542 1.40663 1.86569 1.34597 1.21462 1.27474 0.90681 1.21427 0.89595 1.27000 0.92444 1.05947 0.93340 1.70210 1.20827 1.33694 1.20661 0.84959 0.79224 0.74896 0.79104 1.16929 1.19311 1.19300 1.21155 0.95994 0.92773 0.95132 1.22073 0.98823 1.01462 0.97901 1.21966 0.95950 1.00070 1.01160 0.91816 0.94861 0.92239 0.89820 0.90960 0.91159 0.93782 0.93696 0.93196 0.89664 0.95674 0.95954 0.77429 0.91638 0.91193 0.94507 0.93623 0.90828 0.93312 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 7.82 71.98 0.56 -2.59 16 2 C -0.08 -1.60 3.01 -9.72 -0.03 -1.63 16 3 H 0.09 1.46 7.85 -2.38 -0.02 1.44 16 4 C -0.11 -2.10 6.39 31.88 0.20 -1.90 16 5 C -0.11 -2.97 4.94 31.67 0.16 -2.81 16 6 C -0.06 -1.67 0.66 -51.46 -0.03 -1.70 16 7 C -0.13 -3.42 7.01 71.98 0.50 -2.91 16 8 C 0.15 6.32 3.25 86.38 0.28 6.60 16 9 N -0.75 -35.33 5.04 -467.42 -2.36 -37.69 16 10 C 0.54 32.41 7.75 86.36 0.67 33.08 16 11 O -0.64 -44.51 15.02 -4.32 -0.06 -44.57 16 12 C -0.57 -33.56 9.54 24.83 0.24 -33.32 16 13 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 14 C 0.03 1.57 5.50 85.31 0.47 2.03 16 15 N -0.82 -51.96 11.83 21.84 0.26 -51.70 16 16 Si 1.00 41.90 29.56 68.60 2.03 43.93 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 C -0.05 -1.18 0.86 -51.46 -0.04 -1.22 16 21 C -0.15 -4.02 6.11 71.98 0.44 -3.58 16 22 C -0.13 -2.56 7.19 71.98 0.52 -2.05 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 24 H 0.03 0.90 6.80 -2.39 -0.02 0.88 16 25 H 0.06 1.24 6.94 -2.38 -0.02 1.22 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 28 H 0.07 1.72 7.84 -2.39 -0.02 1.70 16 29 H 0.04 1.38 7.42 -2.39 -0.02 1.36 16 30 H 0.04 1.23 6.90 -2.38 -0.02 1.22 16 31 H 0.05 1.34 6.86 -2.39 -0.02 1.32 16 32 H 0.08 1.66 6.62 -2.38 -0.02 1.64 16 33 H 0.03 1.15 6.62 -2.39 -0.02 1.13 16 34 H 0.02 1.02 6.86 -2.39 -0.02 1.00 16 35 H 0.39 16.09 6.97 -92.70 -0.65 15.44 16 36 H 0.27 15.55 8.29 -92.70 -0.77 14.79 16 37 H 0.07 1.59 7.81 -2.38 -0.02 1.57 16 38 H 0.04 1.14 6.86 -2.39 -0.02 1.13 16 39 H 0.04 1.44 4.95 -2.39 -0.01 1.43 16 40 H 0.07 1.18 6.62 -2.39 -0.02 1.16 16 41 H 0.05 1.03 6.86 -2.38 -0.02 1.01 16 42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -76.53 312.19 4.15 -72.38 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.36 Total: 29.66 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 3.93 Total: -12.00 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.10 Total: -89.40 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.06 Total: -44.57 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -76.53 4.15 -72.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597981507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.222 kcal (2) G-P(sol) polarization free energy of solvation -76.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds