Wall clock time and date at job start Mon Mar 30 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.45828 * 2 1 4 4 C 1.53054 * 109.46186 * 240.02459 * 2 1 3 5 5 C 1.53059 * 109.26237 * 180.86109 * 4 2 1 6 6 C 1.53042 * 109.45865 * 297.80023 * 5 4 2 7 7 C 1.53185 * 109.16264 * 182.30587 * 6 5 4 8 8 C 1.53206 * 109.02274 * 56.92074 * 7 6 5 9 9 C 1.53089 * 109.16994 * 302.99736 * 8 7 6 10 10 H 1.09002 * 109.47989 * 297.62678 * 9 8 7 11 11 C 1.50696 * 109.48132 * 177.60693 * 9 8 7 12 12 H 1.08001 * 119.99996 * 0.02562 * 11 9 8 13 13 C 1.37881 * 120.00237 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99589 * 0.02562 * 13 11 9 15 15 Si 1.86794 * 119.99896 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47544 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46712 * 120.00178 * 15 13 11 18 18 H 1.48500 * 109.47356 * 239.99779 * 15 13 11 19 19 O 1.42825 * 109.58478 * 177.66139 * 5 4 2 20 20 C 1.53075 * 109.24463 * 57.63473 * 5 4 2 21 21 C 1.53047 * 109.25915 * 302.37168 * 20 5 4 22 22 N 1.46839 * 109.51914 * 59.11694 * 21 20 5 23 23 C 1.46907 * 111.00064 * 174.14396 * 22 21 20 24 24 H 1.09000 * 109.47716 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.46867 * 299.97857 * 1 2 3 26 26 H 1.08996 * 109.47404 * 59.97236 * 1 2 3 27 27 H 1.09005 * 109.50976 * 60.92185 * 4 2 1 28 28 H 1.09001 * 109.50550 * 300.79883 * 4 2 1 29 29 H 1.09005 * 109.52173 * 302.21053 * 6 5 4 30 30 H 1.09003 * 109.52700 * 62.33662 * 6 5 4 31 31 H 1.08997 * 109.55504 * 176.78578 * 7 6 5 32 32 H 1.08999 * 109.54749 * 296.97466 * 7 6 5 33 33 H 1.09002 * 109.53466 * 183.07999 * 8 7 6 34 34 H 1.09002 * 109.51688 * 62.89739 * 8 7 6 35 35 H 0.97003 * 119.99621 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.50697 * 62.30550 * 20 5 4 37 37 H 1.09001 * 109.50406 * 182.43258 * 20 5 4 38 38 H 1.09001 * 109.46251 * 299.09850 * 21 20 5 39 39 H 1.09001 * 109.45561 * 179.12398 * 21 20 5 40 40 H 1.08996 * 109.47011 * 184.25647 * 23 22 21 41 41 H 1.09007 * 109.46738 * 304.25595 * 23 22 21 42 42 H 1.08999 * 109.46896 * 64.25056 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2501 5 6 3.5703 -0.7372 -1.2346 6 6 4.0958 0.6996 -1.2770 7 6 5.6269 0.6740 -1.3195 8 6 6.0791 -0.1480 -2.5308 9 6 5.4773 -1.5525 -2.4382 10 1 5.8507 -2.0498 -1.5430 11 6 5.8697 -2.3487 -3.6560 12 1 6.4869 -1.8987 -4.4196 13 6 5.4408 -3.6517 -3.7955 14 7 4.6889 -4.1995 -2.8659 15 14 5.9267 -4.6383 -5.3054 16 1 6.7691 -3.7992 -6.1951 17 1 6.6936 -5.8390 -4.8864 18 1 4.7043 -5.0614 -6.0348 19 8 4.0530 -1.4559 -2.3706 20 6 4.0548 -1.4197 0.0470 21 6 3.4864 -0.6785 1.2595 22 7 2.0193 -0.6919 1.1992 23 6 1.4371 -0.1111 2.4165 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5135 0.8902 26 1 -0.3634 0.5142 -0.8897 27 1 1.6904 -0.1978 -2.1402 28 1 1.6652 -1.7445 -1.2582 29 1 3.7150 1.2006 -2.1671 30 1 3.7641 1.2352 -0.3875 31 1 6.0065 1.6919 -1.4074 32 1 6.0096 0.2197 -0.4056 33 1 7.1669 -0.2176 -2.5384 34 1 5.7378 0.3349 -3.4465 35 1 4.3875 -5.1163 -2.9639 36 1 3.7128 -2.4546 0.0599 37 1 5.1440 -1.3951 0.0831 38 1 3.8408 0.3523 1.2539 39 1 3.8168 -1.1713 2.1739 40 1 0.3515 -0.2020 2.3790 41 1 1.8163 -0.6421 3.2897 42 1 1.7115 0.9416 2.4839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686243583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:08 Heat of formation + Delta-G solvation = -51.848231 kcal Electronic energy + Delta-G solvation = -20685.599662 eV Core-core repulsion = 17858.018387 eV Total energy + Delta-G solvation = -2827.581274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.92670 -37.25138 -33.19955 -32.54284 -32.02195 -31.61983 -28.53499 -26.70009 -25.52373 -24.87896 -22.47545 -22.05537 -21.12738 -19.52743 -17.56119 -16.53484 -15.75047 -15.29458 -14.89258 -14.59963 -14.40255 -14.02921 -13.91344 -13.58195 -12.79131 -12.71174 -12.38100 -12.04472 -11.90099 -11.79235 -11.63223 -11.51089 -11.14433 -10.97026 -10.89133 -10.65281 -10.55154 -10.40304 -10.28524 -10.21652 -10.02996 -9.61040 -9.26865 -8.73920 -8.40937 -8.01099 -7.72518 -5.95323 -4.07056 3.33056 3.41149 3.44718 4.12031 4.46086 4.82175 5.12106 5.25808 5.30421 5.40341 5.50065 5.52124 5.53394 5.62332 5.65824 5.76678 5.81908 5.83376 5.93236 5.98351 6.02264 6.09815 6.15650 6.28179 6.32896 6.35810 6.41343 6.55080 6.67357 6.69981 6.81257 6.90109 6.94085 7.04882 7.17232 7.38127 7.39061 7.60488 7.95586 8.35780 8.85624 9.23255 9.62695 11.11823 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.006788 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.939080 B = 4124.127443 C = 4506.983980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.039 0.961 4 C -0.093 4.093 5 C 0.117 3.883 6 C -0.141 4.141 7 C -0.120 4.120 8 C -0.144 4.144 9 C 0.219 3.781 10 H 0.018 0.982 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.856 5.856 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 O -0.345 6.345 20 C -0.134 4.134 21 C 0.059 3.941 22 N -0.536 5.536 23 C 0.023 3.977 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.259 0.741 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 8.853 8.358 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.056 0.944 4 C -0.131 4.131 5 C 0.076 3.924 6 C -0.179 4.179 7 C -0.158 4.158 8 C -0.182 4.182 9 C 0.163 3.837 10 H 0.035 0.965 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.127 4.127 14 N -0.492 5.492 15 Si 0.717 3.283 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 O -0.264 6.264 20 C -0.172 4.172 21 C -0.068 4.068 22 N -0.262 5.262 23 C -0.125 4.125 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.539 8.125 8.241 12.830 hybrid contribution 0.674 0.450 -0.490 0.947 sum -4.865 8.575 7.751 12.541 Atomic orbital electron populations 1.21916 0.94716 1.02591 1.01182 1.21632 0.94858 0.95304 0.90540 0.94353 1.21495 0.94562 1.01758 0.95306 1.21077 0.92894 0.89898 0.88559 1.22243 0.96408 0.98542 1.00685 1.21645 0.95491 0.99135 0.99510 1.22268 1.00014 0.99483 0.96429 1.19683 0.78084 0.88783 0.97114 0.96468 1.21043 1.32250 0.96259 1.06931 0.91969 1.25052 0.94085 0.97643 0.95967 1.70053 1.32982 1.13413 1.32796 0.86604 0.78319 0.80029 0.83394 1.19721 1.20994 1.20893 1.88366 1.24461 1.73093 1.40510 1.22132 1.00421 1.01064 0.93537 1.22136 0.86656 0.98650 0.99376 1.61929 1.07648 1.54848 1.01746 1.22401 1.00508 0.96780 0.92858 0.91660 0.92876 0.92282 0.91659 0.90414 0.92174 0.92892 0.93558 0.92565 0.92683 0.92693 0.93127 0.90135 0.91191 0.95200 0.91416 0.91218 0.91811 0.96305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.77 37.16 0.33 -1.49 16 2 C 0.08 1.26 2.20 -67.72 -0.15 1.12 16 3 H 0.04 0.57 6.56 -51.93 -0.34 0.23 16 4 C -0.09 -1.71 4.53 -26.67 -0.12 -1.83 16 5 C 0.12 2.37 0.86 -90.53 -0.08 2.29 16 6 C -0.14 -2.53 4.32 -26.61 -0.11 -2.65 16 7 C -0.12 -2.18 5.72 -26.53 -0.15 -2.33 16 8 C -0.14 -3.10 5.36 -26.58 -0.14 -3.25 16 9 C 0.22 5.64 2.17 -27.84 -0.06 5.58 16 10 H 0.02 0.48 6.41 -51.93 -0.33 0.15 16 11 C -0.53 -14.94 8.79 -34.44 -0.30 -15.24 16 12 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 14 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 O -0.35 -8.90 9.27 -35.23 -0.33 -9.22 16 20 C -0.13 -2.60 4.33 -26.67 -0.12 -2.72 16 21 C 0.06 0.94 5.22 -3.83 -0.02 0.92 16 22 N -0.54 -8.09 4.74 -234.91 -1.11 -9.20 16 23 C 0.02 0.27 9.05 60.07 0.54 0.81 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.57 6.32 -51.92 -0.33 0.24 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.85 4.92 -51.93 -0.26 0.59 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.99 6.58 -51.93 -0.34 0.65 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.07 1.41 5.01 -51.93 -0.26 1.15 16 38 H 0.03 0.45 6.45 -51.93 -0.34 0.12 16 39 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.07 0.75 6.21 -51.93 -0.32 0.42 16 41 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 42 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -29.81 306.55 -8.74 -38.55 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.13 Total: -0.07 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.48 Total: -16.65 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.40 Total: -33.73 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.33 Total: -9.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.81 -8.74 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686243583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.299 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds