Wall clock time and date at job start Mon Mar 30 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46347 * 2 1 4 4 C 1.53050 * 109.46884 * 240.01651 * 2 1 3 5 5 C 1.53067 * 109.26293 * 180.85957 * 4 2 1 6 6 C 1.53030 * 109.47282 * 177.56161 * 5 4 2 7 7 C 1.53194 * 109.14823 * 62.51217 * 6 5 4 8 8 C 1.53179 * 109.03078 * 56.90538 * 7 6 5 9 9 C 1.53082 * 109.19406 * 303.02362 * 8 7 6 10 10 H 1.09006 * 109.47926 * 297.63506 * 9 8 7 11 11 C 1.50697 * 109.48459 * 177.59922 * 9 8 7 12 12 H 1.08001 * 120.00000 * 275.11225 * 11 9 8 13 13 C 1.37875 * 120.00451 * 95.10074 * 11 9 8 14 14 N 1.31517 * 120.00417 * 185.40983 * 13 11 9 15 15 Si 1.86803 * 119.99852 * 5.41773 * 13 11 9 16 16 H 1.48504 * 109.47365 * 84.79162 * 15 13 11 17 17 H 1.48500 * 109.47201 * 204.79492 * 15 13 11 18 18 H 1.48503 * 109.46930 * 324.79233 * 15 13 11 19 19 O 1.42850 * 109.50605 * 297.64278 * 5 4 2 20 20 C 1.53048 * 109.25930 * 57.61834 * 5 4 2 21 21 C 1.53048 * 109.27067 * 302.40245 * 20 5 4 22 22 N 1.46842 * 109.52516 * 59.09345 * 21 20 5 23 23 C 1.46895 * 110.99895 * 174.14498 * 22 21 20 24 24 H 1.09007 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47369 * 299.98304 * 1 2 3 26 26 H 1.08998 * 109.47322 * 59.98429 * 1 2 3 27 27 H 1.09000 * 109.50275 * 60.91946 * 4 2 1 28 28 H 1.09007 * 109.53705 * 300.81819 * 4 2 1 29 29 H 1.08999 * 109.52780 * 302.60584 * 6 5 4 30 30 H 1.09011 * 109.52543 * 182.41194 * 6 5 4 31 31 H 1.08999 * 109.54628 * 176.77247 * 7 6 5 32 32 H 1.09001 * 109.54144 * 296.94360 * 7 6 5 33 33 H 1.08994 * 109.51716 * 62.94208 * 8 7 6 34 34 H 1.08997 * 109.51346 * 183.05233 * 8 7 6 35 35 H 0.96998 * 120.00282 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.50118 * 62.33602 * 20 5 4 37 37 H 1.08996 * 109.50718 * 182.45644 * 20 5 4 38 38 H 1.09004 * 109.45816 * 299.08029 * 21 20 5 39 39 H 1.09004 * 109.46416 * 179.11637 * 21 20 5 40 40 H 1.09005 * 109.47333 * 184.25306 * 23 22 21 41 41 H 1.09006 * 109.47550 * 304.25142 * 23 22 21 42 42 H 1.09003 * 109.47547 * 64.25171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2499 5 6 3.5706 -0.7372 -1.2343 6 6 4.0850 -1.5100 -2.4508 7 6 3.6433 -0.7886 -3.7280 8 6 4.1601 0.6529 -3.6917 9 6 3.6417 1.3417 -2.4268 10 1 2.5527 1.3815 -2.4549 11 6 4.1943 2.7419 -2.3545 12 1 5.1703 2.9157 -1.9262 13 6 3.4539 3.8009 -2.8353 14 7 3.9772 5.0070 -2.8702 15 14 1.7074 3.5229 -3.4369 16 1 0.7729 3.5720 -2.2838 17 1 1.3455 4.5819 -4.4129 18 1 1.6154 2.1934 -4.0922 19 8 4.0621 0.6034 -1.2777 20 6 4.0553 -1.4189 0.0474 21 6 3.4864 -0.6780 1.2597 22 7 2.0193 -0.6918 1.1993 23 6 1.4369 -0.1112 2.4165 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5136 0.8901 26 1 -0.3634 0.5141 -0.8898 27 1 1.6905 -0.1980 -2.1400 28 1 1.6654 -1.7447 -1.2586 29 1 3.6739 -2.5195 -2.4417 30 1 5.1735 -1.5588 -2.4179 31 1 4.0544 -1.3017 -4.5974 32 1 2.5549 -0.7859 -3.7874 33 1 5.2501 0.6488 -3.6835 34 1 3.8046 1.1894 -4.5714 35 1 3.4562 5.7522 -3.2082 36 1 3.7139 -2.4540 0.0604 37 1 5.1443 -1.3938 0.0835 38 1 3.8405 0.3529 1.2542 39 1 3.8170 -1.1704 2.1743 40 1 0.3513 -0.2023 2.3790 41 1 1.8160 -0.6421 3.2898 42 1 1.7110 0.9416 2.4841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686243584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:11 Heat of formation + Delta-G solvation = -55.126166 kcal Electronic energy + Delta-G solvation = -20943.499161 eV Core-core repulsion = 18115.775745 eV Total energy + Delta-G solvation = -2827.723416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.03647 -37.29147 -33.47022 -32.81485 -32.21440 -31.80203 -28.92604 -26.79361 -26.15335 -24.57826 -22.78920 -21.80427 -20.74912 -19.55226 -18.45430 -16.96594 -15.62044 -15.44601 -15.24116 -14.85294 -14.16907 -14.02187 -13.97757 -13.62618 -12.86638 -12.73535 -12.66942 -12.32652 -12.06486 -11.84027 -11.67945 -11.60769 -11.27023 -11.19788 -11.09593 -10.92739 -10.76246 -10.59405 -10.47272 -10.24234 -9.90348 -9.80603 -9.53150 -8.78768 -8.75054 -8.24247 -7.96881 -6.16958 -4.16993 3.20685 3.29056 3.29178 4.17164 4.31686 4.63188 5.03782 5.09832 5.15846 5.26304 5.31020 5.50364 5.57709 5.64581 5.68690 5.71471 5.76242 5.79872 5.87052 5.95889 5.98973 6.04542 6.14070 6.16033 6.22906 6.27837 6.32595 6.34370 6.38867 6.43485 6.59438 6.64339 6.70585 6.83619 6.87454 7.30018 7.37664 7.40244 7.67086 8.17664 8.71931 8.95430 9.45047 10.95856 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.009607 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.582224 B = 2913.965003 C = 3449.492776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.081 3.919 3 H 0.056 0.944 4 C -0.133 4.133 5 C 0.111 3.889 6 C -0.135 4.135 7 C -0.127 4.127 8 C -0.142 4.142 9 C 0.190 3.810 10 H 0.019 0.981 11 C -0.504 4.504 12 H 0.079 0.921 13 C 0.077 3.923 14 N -0.892 5.892 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.264 1.264 19 O -0.365 6.365 20 C -0.096 4.096 21 C 0.058 3.942 22 N -0.538 5.538 23 C 0.022 3.978 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 -12.969 4.808 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 H 0.074 0.926 4 C -0.171 4.171 5 C 0.071 3.929 6 C -0.173 4.173 7 C -0.164 4.164 8 C -0.181 4.181 9 C 0.134 3.866 10 H 0.036 0.964 11 C -0.541 4.541 12 H 0.098 0.902 13 C -0.126 4.126 14 N -0.529 5.529 15 Si 0.696 3.304 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.189 1.189 19 O -0.284 6.284 20 C -0.134 4.134 21 C -0.070 4.070 22 N -0.264 5.264 23 C -0.126 4.126 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.202 -13.162 4.864 14.966 hybrid contribution -0.859 0.764 -0.606 1.300 sum -6.061 -12.398 4.258 14.442 Atomic orbital electron populations 1.21923 0.95108 1.01856 1.01565 1.21547 0.94375 0.96926 0.89841 0.92595 1.22200 0.96731 1.00857 0.97280 1.21284 0.91943 0.85889 0.93804 1.22088 1.01267 0.98358 0.95607 1.21737 1.00288 0.97726 0.96691 1.22375 1.01372 0.93304 1.01023 1.20151 0.93770 0.90920 0.81786 0.96385 1.20778 1.04944 0.87983 1.40429 0.90246 1.24908 0.97756 0.94823 0.95074 1.69872 1.37234 0.99716 1.46111 0.86979 0.85772 0.78313 0.79333 1.19826 1.21132 1.18859 1.88090 1.73610 1.21083 1.45652 1.21518 1.00337 0.98607 0.92960 1.22000 0.86934 1.00266 0.97792 1.62024 1.07520 1.54801 1.02027 1.22382 1.00279 0.97508 0.92473 0.92171 0.92639 0.92470 0.91058 0.91282 0.92273 0.91562 0.92943 0.92704 0.91942 0.92296 0.92354 0.90889 0.91101 0.93342 0.91508 0.91368 0.91931 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.76 37.16 0.33 -1.79 16 2 C 0.08 1.38 2.31 -67.72 -0.16 1.22 16 3 H 0.06 1.16 7.76 -51.93 -0.40 0.75 16 4 C -0.13 -2.26 3.48 -26.67 -0.09 -2.35 16 5 C 0.11 1.98 0.68 -90.55 -0.06 1.92 16 6 C -0.14 -2.20 4.92 -26.62 -0.13 -2.33 16 7 C -0.13 -2.21 5.72 -26.54 -0.15 -2.36 16 8 C -0.14 -3.06 5.40 -26.60 -0.14 -3.21 16 9 C 0.19 4.59 1.98 -27.84 -0.06 4.53 16 10 H 0.02 0.45 3.42 -51.93 -0.18 0.27 16 11 C -0.50 -14.44 9.23 -34.44 -0.32 -14.76 16 12 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 15 Si 0.87 21.26 27.00 -169.99 -4.59 16.67 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.26 -6.12 6.80 56.52 0.38 -5.73 16 19 O -0.36 -8.25 8.72 -35.23 -0.31 -8.56 16 20 C -0.10 -1.48 5.11 -26.68 -0.14 -1.62 16 21 C 0.06 0.90 5.33 -3.83 -0.02 0.88 16 22 N -0.54 -8.21 4.74 -234.91 -1.11 -9.33 16 23 C 0.02 0.29 9.05 60.06 0.54 0.83 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.73 6.32 -51.93 -0.33 0.40 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.31 4.99 -51.93 -0.26 1.05 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.94 6.69 -51.93 -0.35 0.59 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.88 7.76 -51.93 -0.40 0.48 16 39 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.07 0.81 6.21 -51.93 -0.32 0.49 16 41 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -29.89 308.16 -8.40 -38.29 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.31 Total: 1.50 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.50 Total: -16.92 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.34 Total: -35.62 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.31 Total: -8.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.59 Total: 16.67 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.89 -8.40 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686243584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.839 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds