Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46347 * 2 1 4 4 C 1.53050 * 109.46884 * 240.01651 * 2 1 3 5 5 C 1.53067 * 109.26293 * 180.85957 * 4 2 1 6 6 C 1.53030 * 109.47282 * 177.56161 * 5 4 2 7 7 C 1.53194 * 109.14823 * 62.51217 * 6 5 4 8 8 C 1.53179 * 109.03078 * 56.90538 * 7 6 5 9 9 C 1.53082 * 109.19406 * 303.02362 * 8 7 6 10 10 H 1.09006 * 109.47926 * 297.63506 * 9 8 7 11 11 C 1.50697 * 109.48459 * 177.59922 * 9 8 7 12 12 H 1.08001 * 120.00000 * 275.11225 * 11 9 8 13 13 C 1.37875 * 120.00451 * 95.10074 * 11 9 8 14 14 N 1.31517 * 120.00417 * 185.40983 * 13 11 9 15 15 Si 1.86803 * 119.99852 * 5.41773 * 13 11 9 16 16 H 1.48504 * 109.47365 * 84.79162 * 15 13 11 17 17 H 1.48500 * 109.47201 * 204.79492 * 15 13 11 18 18 H 1.48503 * 109.46930 * 324.79233 * 15 13 11 19 19 O 1.42850 * 109.50605 * 297.64278 * 5 4 2 20 20 C 1.53048 * 109.25930 * 57.61834 * 5 4 2 21 21 C 1.53048 * 109.27067 * 302.40245 * 20 5 4 22 22 N 1.46842 * 109.52516 * 59.09345 * 21 20 5 23 23 C 1.46895 * 110.99895 * 174.14498 * 22 21 20 24 24 H 1.09007 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47369 * 299.98304 * 1 2 3 26 26 H 1.08998 * 109.47322 * 59.98429 * 1 2 3 27 27 H 1.09000 * 109.50275 * 60.91946 * 4 2 1 28 28 H 1.09007 * 109.53705 * 300.81819 * 4 2 1 29 29 H 1.08999 * 109.52780 * 302.60584 * 6 5 4 30 30 H 1.09011 * 109.52543 * 182.41194 * 6 5 4 31 31 H 1.08999 * 109.54628 * 176.77247 * 7 6 5 32 32 H 1.09001 * 109.54144 * 296.94360 * 7 6 5 33 33 H 1.08994 * 109.51716 * 62.94208 * 8 7 6 34 34 H 1.08997 * 109.51346 * 183.05233 * 8 7 6 35 35 H 0.96998 * 120.00282 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.50118 * 62.33602 * 20 5 4 37 37 H 1.08996 * 109.50718 * 182.45644 * 20 5 4 38 38 H 1.09004 * 109.45816 * 299.08029 * 21 20 5 39 39 H 1.09004 * 109.46416 * 179.11637 * 21 20 5 40 40 H 1.09005 * 109.47333 * 184.25306 * 23 22 21 41 41 H 1.09006 * 109.47550 * 304.25142 * 23 22 21 42 42 H 1.09003 * 109.47547 * 64.25171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2499 5 6 3.5706 -0.7372 -1.2343 6 6 4.0850 -1.5100 -2.4508 7 6 3.6433 -0.7886 -3.7280 8 6 4.1601 0.6529 -3.6917 9 6 3.6417 1.3417 -2.4268 10 1 2.5527 1.3815 -2.4549 11 6 4.1943 2.7419 -2.3545 12 1 5.1703 2.9157 -1.9262 13 6 3.4539 3.8009 -2.8353 14 7 3.9772 5.0070 -2.8702 15 14 1.7074 3.5229 -3.4369 16 1 0.7729 3.5720 -2.2838 17 1 1.3455 4.5819 -4.4129 18 1 1.6154 2.1934 -4.0922 19 8 4.0621 0.6034 -1.2777 20 6 4.0553 -1.4189 0.0474 21 6 3.4864 -0.6780 1.2597 22 7 2.0193 -0.6918 1.1993 23 6 1.4369 -0.1112 2.4165 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5136 0.8901 26 1 -0.3634 0.5141 -0.8898 27 1 1.6905 -0.1980 -2.1400 28 1 1.6654 -1.7447 -1.2586 29 1 3.6739 -2.5195 -2.4417 30 1 5.1735 -1.5588 -2.4179 31 1 4.0544 -1.3017 -4.5974 32 1 2.5549 -0.7859 -3.7874 33 1 5.2501 0.6488 -3.6835 34 1 3.8046 1.1894 -4.5714 35 1 3.4562 5.7522 -3.2082 36 1 3.7139 -2.4540 0.0604 37 1 5.1443 -1.3938 0.0835 38 1 3.8405 0.3529 1.2542 39 1 3.8170 -1.1704 2.1743 40 1 0.3513 -0.2023 2.3790 41 1 1.8160 -0.6421 3.2898 42 1 1.7110 0.9416 2.4841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686243584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = -75.267690 kcal Electronic energy + Delta-G solvation = -20944.372563 eV Core-core repulsion = 18115.775745 eV Total energy + Delta-G solvation = -2828.596818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46191 -38.69530 -35.30470 -34.37615 -33.84971 -33.20359 -30.53881 -28.12668 -27.66847 -26.00149 -24.12137 -23.54053 -22.17917 -20.86643 -20.05272 -19.03383 -17.22484 -17.01000 -16.52035 -16.20846 -15.90108 -15.46217 -15.30877 -15.01318 -14.72317 -14.41440 -13.90270 -13.73348 -13.49865 -13.08658 -13.00399 -12.92966 -12.87253 -12.78176 -12.71234 -12.27040 -12.24978 -11.97714 -11.90614 -11.83744 -11.68785 -11.32181 -11.10306 -10.87356 -10.53232 -9.90361 -9.27453 -8.40879 -6.46951 1.24690 1.26288 1.37030 2.23167 2.83128 2.98038 3.28254 3.76406 3.84300 3.90713 4.11619 4.15397 4.23365 4.37311 4.39300 4.41985 4.50156 4.56686 4.63248 4.67047 4.69545 4.74957 4.83476 4.88995 4.93493 4.96897 5.02171 5.09533 5.10995 5.14498 5.17889 5.26613 5.29468 5.30331 5.37400 5.55467 5.67616 6.06959 6.13830 6.18195 6.59856 6.92611 7.21050 8.76456 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.009607 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.582224 B = 2913.965003 C = 3449.492776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.004 0.996 4 C -0.129 4.129 5 C 0.096 3.904 6 C -0.132 4.132 7 C -0.121 4.121 8 C -0.142 4.142 9 C 0.199 3.801 10 H 0.020 0.980 11 C -0.521 4.521 12 H 0.025 0.975 13 C 0.020 3.980 14 N -0.941 5.941 15 Si 0.936 3.064 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.239 1.239 19 O -0.393 6.393 20 C -0.093 4.093 21 C 0.057 3.943 22 N -0.529 5.529 23 C 0.019 3.981 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.271 0.729 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -16.543 4.677 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.022 0.978 4 C -0.167 4.167 5 C 0.056 3.944 6 C -0.169 4.169 7 C -0.158 4.158 8 C -0.181 4.181 9 C 0.142 3.858 10 H 0.037 0.963 11 C -0.559 4.559 12 H 0.043 0.957 13 C -0.178 4.178 14 N -0.580 5.580 15 Si 0.758 3.242 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.163 1.163 19 O -0.314 6.314 20 C -0.130 4.130 21 C -0.071 4.071 22 N -0.254 5.254 23 C -0.129 4.129 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -7.549 -16.762 4.742 18.985 hybrid contribution 0.004 1.891 -0.443 1.943 sum -7.544 -14.871 4.299 17.220 Atomic orbital electron populations 1.21890 0.92916 1.03293 1.01841 1.21523 0.96173 0.94321 0.90959 0.97759 1.22179 0.95851 1.02168 0.96481 1.21738 0.92905 0.83637 0.96079 1.22092 1.01283 0.99722 0.93817 1.21700 1.00837 0.94640 0.98618 1.22246 1.00440 0.96399 0.98982 1.19853 0.93371 0.89037 0.83495 0.96272 1.21053 1.03195 0.91441 1.40195 0.95688 1.25814 1.02616 0.94209 0.95168 1.70026 1.39347 1.00923 1.47710 0.85913 0.79465 0.79588 0.79234 1.19061 1.20167 1.16264 1.88016 1.74252 1.24037 1.45076 1.21561 1.00398 0.99702 0.91377 1.22034 0.87374 0.98269 0.99398 1.62124 1.07086 1.53991 1.02153 1.22503 1.01363 0.96580 0.92419 0.89993 0.91832 0.92895 0.92533 0.88341 0.88429 0.91884 0.90204 0.91747 0.93512 0.93102 0.92032 0.87746 0.91170 0.97502 0.88795 0.89676 0.89715 0.97580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.76 71.98 0.63 -3.08 16 2 C 0.08 2.57 2.31 44.94 0.10 2.67 16 3 H 0.00 0.18 7.76 -2.39 -0.02 0.17 16 4 C -0.13 -4.05 3.48 30.63 0.11 -3.94 16 5 C 0.10 3.24 0.68 -10.75 -0.01 3.23 16 6 C -0.13 -3.82 4.92 30.67 0.15 -3.67 16 7 C -0.12 -3.83 5.72 30.72 0.18 -3.66 16 8 C -0.14 -6.09 5.40 30.68 0.17 -5.93 16 9 C 0.20 9.83 1.98 29.87 0.06 9.89 16 10 H 0.02 0.96 3.42 -2.38 -0.01 0.95 16 11 C -0.52 -31.71 9.23 25.60 0.24 -31.48 16 12 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 13 C 0.02 1.20 5.47 84.65 0.46 1.66 16 14 N -0.94 -59.91 13.96 21.45 0.30 -59.61 16 15 Si 0.94 44.45 27.00 68.60 1.85 46.31 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.24 -10.34 6.80 99.48 0.68 -9.66 16 19 O -0.39 -18.28 8.72 -148.98 -1.30 -19.58 16 20 C -0.09 -2.62 5.11 30.63 0.16 -2.47 16 21 C 0.06 1.70 5.33 86.33 0.46 2.16 16 22 N -0.53 -14.99 4.74 -897.13 -4.26 -19.24 16 23 C 0.02 0.47 9.05 127.69 1.16 1.62 16 24 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.06 1.53 6.32 -2.39 -0.02 1.51 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.94 4.99 -2.39 -0.01 1.93 16 28 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 29 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.95 6.69 -2.39 -0.02 1.94 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.01 0.25 7.76 -2.38 -0.02 0.23 16 39 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 40 H 0.08 1.78 6.21 -2.38 -0.01 1.77 16 41 H 0.08 1.68 8.09 -2.38 -0.02 1.66 16 42 H 0.01 0.16 8.14 -2.39 -0.02 0.14 16 Total: -1.00 -69.94 308.16 1.39 -68.55 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.94 Total: 16.57 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 3.86 Total: -32.98 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -3.96 Total: -78.86 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.30 Total: -19.58 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.85 Total: 46.31 kcal Total: -69.94 1.39 -68.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686243584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.722 kcal (2) G-P(sol) polarization free energy of solvation -69.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds