Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46732 * 2 1 4 4 C 1.53086 * 109.46883 * 240.01658 * 2 1 3 5 5 C 1.52887 * 109.26761 * 181.27375 * 4 2 1 6 6 C 1.54162 * 109.50407 * 177.27129 * 5 4 2 7 7 C 1.55350 * 102.19038 * 140.98631 * 6 5 4 8 8 C 1.54970 * 100.96305 * 326.04026 * 7 6 5 9 9 C 1.53006 * 110.30810 * 277.41221 * 8 7 6 10 10 C 1.50700 * 110.31009 * 155.24825 * 8 7 6 11 11 H 1.07999 * 119.99872 * 29.78112 * 10 8 7 12 12 C 1.37874 * 119.99909 * 209.78749 * 10 8 7 13 13 N 1.31512 * 120.00003 * 173.14343 * 12 10 8 14 14 Si 1.86801 * 120.00133 * 353.13750 * 12 10 8 15 15 H 1.48506 * 109.46801 * 85.23466 * 14 12 10 16 16 H 1.48501 * 109.47239 * 205.23336 * 14 12 10 17 17 H 1.48493 * 109.47144 * 325.23758 * 14 12 10 18 18 O 1.43008 * 110.07309 * 295.65219 * 5 4 2 19 19 C 1.52896 * 109.83915 * 56.99343 * 5 4 2 20 20 C 1.53083 * 109.26414 * 302.99544 * 19 5 4 21 21 N 1.46840 * 109.46736 * 119.98762 * 2 1 3 22 22 C 1.46898 * 111.00215 * 306.13960 * 21 2 1 23 23 H 1.08999 * 109.47000 * 300.01032 * 1 2 3 24 24 H 1.09002 * 109.47127 * 60.01312 * 1 2 3 25 25 H 1.09002 * 109.46695 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.50635 * 61.33952 * 4 2 1 27 27 H 1.09001 * 109.50515 * 301.21339 * 4 2 1 28 28 H 1.09003 * 110.86306 * 259.15942 * 6 5 4 29 29 H 1.08996 * 110.86390 * 22.80996 * 6 5 4 30 30 H 1.08997 * 111.12322 * 83.95971 * 7 6 5 31 31 H 1.08999 * 111.12470 * 208.07339 * 7 6 5 32 32 H 1.08993 * 109.47388 * 182.47902 * 9 8 7 33 33 H 1.08997 * 109.46985 * 302.48305 * 9 8 7 34 34 H 1.09007 * 109.46649 * 62.47649 * 9 8 7 35 35 H 0.97005 * 120.00219 * 179.97438 * 13 12 10 36 36 H 1.08997 * 109.50909 * 62.93659 * 19 5 4 37 37 H 1.09002 * 109.50024 * 183.01749 * 19 5 4 38 38 H 1.09006 * 109.46844 * 178.73386 * 20 19 5 39 39 H 1.09002 * 109.47163 * 298.73008 * 20 19 5 40 40 H 1.08998 * 109.46982 * 291.73877 * 22 21 2 41 41 H 1.08995 * 109.47155 * 51.73597 * 22 21 2 42 42 H 1.08996 * 109.47034 * 171.73763 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0403 -0.7213 -1.2502 5 6 3.5688 -0.7465 -1.2296 6 6 4.0871 -1.5312 -2.4511 7 6 5.3285 -0.6982 -2.8735 8 6 4.8579 0.7342 -2.5153 9 6 3.9912 1.3051 -3.6395 10 6 6.0454 1.6274 -2.2641 11 1 6.9790 1.4407 -2.7740 12 6 5.9401 2.6828 -1.3832 13 7 7.0080 3.3792 -1.0607 14 14 4.2804 3.1236 -0.6479 15 1 4.0338 2.2873 0.5543 16 1 4.2748 4.5578 -0.2628 17 1 3.2134 2.8760 -1.6504 18 8 4.0828 0.5853 -1.3144 19 6 4.0595 -1.4174 0.0537 20 6 3.4864 -0.6741 1.2631 21 7 2.0194 -0.6920 1.1991 22 6 1.4323 -0.1155 2.4161 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5136 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6970 -0.1940 -2.1402 27 1 1.6595 -1.7426 -1.2620 28 1 4.3769 -2.5432 -2.1679 29 1 3.3420 -1.5480 -3.2464 30 1 6.2067 -0.9798 -2.2926 31 1 5.5204 -0.7935 -3.9422 32 1 3.7044 2.3275 -3.3938 33 1 4.5558 1.3002 -4.5718 34 1 3.0957 0.6941 -3.7539 35 1 6.9339 4.1220 -0.4412 36 1 3.7259 -2.4549 0.0725 37 1 5.1485 -1.3845 0.0880 38 1 3.8160 -1.1633 2.1798 39 1 3.8378 0.3577 1.2554 40 1 1.8197 0.8925 2.5640 41 1 0.3479 -0.0765 2.3130 42 1 1.6937 -0.7348 3.2741 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686255687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = -67.304232 kcal Electronic energy + Delta-G solvation = -21211.141079 eV Core-core repulsion = 18382.889582 eV Total energy + Delta-G solvation = -2828.251497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45025 -39.01612 -35.16759 -33.69409 -33.34966 -33.09026 -30.46087 -28.24736 -27.25190 -26.83898 -24.26157 -23.58791 -21.56007 -21.41682 -20.10519 -18.71002 -17.36138 -16.75047 -16.39280 -16.37826 -15.92895 -15.39427 -15.04797 -14.76394 -14.50399 -14.25893 -14.13326 -13.49410 -13.40502 -13.17076 -12.96269 -12.90566 -12.85503 -12.66983 -12.52699 -12.40057 -12.27311 -12.15323 -11.93029 -11.84711 -11.58208 -11.11144 -10.86021 -10.79545 -10.71910 -9.96594 -9.31358 -8.33430 -6.40669 1.31102 1.43443 1.53940 2.39181 2.92421 3.01620 3.33474 3.79842 3.83006 3.97979 4.04724 4.16805 4.30526 4.37724 4.44038 4.51977 4.54446 4.58166 4.63489 4.69807 4.77598 4.80301 4.86288 4.88244 4.93685 4.96472 5.02773 5.05598 5.12783 5.15637 5.19561 5.25848 5.31520 5.40726 5.43267 5.64798 5.76120 6.10159 6.15520 6.23057 6.51802 6.81864 7.36645 8.80162 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021023 B = 0.010787 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.571582 B = 2595.058260 C = 3078.962064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.004 0.996 4 C -0.103 4.103 5 C 0.091 3.909 6 C -0.129 4.129 7 C -0.130 4.130 8 C 0.190 3.810 9 C -0.146 4.146 10 C -0.515 4.515 11 H 0.045 0.955 12 C 0.031 3.969 13 N -0.947 5.947 14 Si 0.980 3.020 15 H -0.286 1.286 16 H -0.330 1.330 17 H -0.247 1.247 18 O -0.388 6.388 19 C -0.108 4.108 20 C 0.056 3.944 21 N -0.529 5.529 22 C 0.017 3.983 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.261 0.739 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.092 0.908 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.283 -12.092 1.506 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 H 0.022 0.978 4 C -0.141 4.141 5 C 0.052 3.948 6 C -0.166 4.166 7 C -0.167 4.167 8 C 0.152 3.848 9 C -0.203 4.203 10 C -0.553 4.553 11 H 0.063 0.937 12 C -0.167 4.167 13 N -0.587 5.587 14 Si 0.814 3.186 15 H -0.214 1.214 16 H -0.261 1.261 17 H -0.172 1.172 18 O -0.310 6.310 19 C -0.146 4.146 20 C -0.072 4.072 21 N -0.254 5.254 22 C -0.131 4.131 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.111 0.889 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.401 -12.304 1.695 19.017 hybrid contribution 0.586 1.842 0.545 2.008 sum -13.815 -10.462 2.240 17.474 Atomic orbital electron populations 1.21893 0.92182 1.03375 1.02189 1.21660 0.96631 0.94333 0.90887 0.97778 1.21928 0.93574 1.02051 0.96543 1.22137 0.93753 0.83364 0.95531 1.23089 0.97155 0.99408 0.96970 1.23094 0.97785 0.94554 1.01312 1.20317 0.88082 0.93596 0.82794 1.22262 0.99206 1.00127 0.98745 1.21243 0.97413 1.11383 1.25244 0.93706 1.25667 0.99604 0.95594 0.95880 1.70087 1.30980 1.21744 1.35889 0.85205 0.81584 0.72322 0.79510 1.21398 1.26114 1.17163 1.87983 1.69341 1.29392 1.44322 1.21807 0.99605 0.99935 0.93237 1.22042 0.87845 0.97949 0.99373 1.62125 1.06390 1.54277 1.02606 1.22549 1.01306 0.96685 0.92570 0.92018 0.91680 0.90260 0.91340 0.88236 0.88661 0.89206 0.92877 0.90183 0.94894 0.92078 0.92274 0.92992 0.88224 0.92718 0.89896 0.98080 0.98001 0.88946 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.78 71.98 0.63 -2.50 16 2 C 0.07 2.24 2.34 44.96 0.10 2.35 16 3 H 0.00 0.16 7.57 -2.38 -0.02 0.15 16 4 C -0.10 -2.96 4.23 30.59 0.13 -2.83 16 5 C 0.09 3.08 0.79 -10.47 -0.01 3.07 16 6 C -0.13 -3.71 5.70 31.80 0.18 -3.53 16 7 C -0.13 -4.82 6.04 32.08 0.19 -4.63 16 8 C 0.19 8.67 0.67 -10.86 -0.01 8.67 16 9 C -0.15 -5.95 8.48 71.98 0.61 -5.34 16 10 C -0.52 -29.85 8.82 25.60 0.23 -29.62 16 11 H 0.04 2.83 8.06 -2.91 -0.02 2.81 16 12 C 0.03 1.87 5.46 84.65 0.46 2.34 16 13 N -0.95 -61.70 13.96 21.45 0.30 -61.40 16 14 Si 0.98 52.27 24.15 68.60 1.66 53.93 16 15 H -0.29 -15.49 5.83 99.48 0.58 -14.91 16 16 H -0.33 -17.84 7.11 99.48 0.71 -17.13 16 17 H -0.25 -12.34 5.52 99.48 0.55 -11.79 16 18 O -0.39 -17.35 4.80 -148.98 -0.71 -18.07 16 19 C -0.11 -3.48 4.94 30.59 0.15 -3.32 16 20 C 0.06 1.90 5.35 86.34 0.46 2.36 16 21 N -0.53 -15.62 4.74 -896.98 -4.25 -19.87 16 22 C 0.02 0.43 9.30 127.69 1.19 1.61 16 23 H 0.06 1.29 6.15 -2.39 -0.01 1.27 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.95 7.81 -2.39 -0.02 1.93 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.27 7.79 -2.39 -0.02 2.25 16 29 H 0.09 2.21 7.58 -2.39 -0.02 2.20 16 30 H 0.05 2.14 8.05 -2.39 -0.02 2.12 16 31 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 32 H 0.03 1.46 5.91 -2.39 -0.01 1.44 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.02 7.29 -2.38 -0.02 2.00 16 35 H 0.26 16.22 8.31 -92.70 -0.77 15.45 16 36 H 0.10 2.58 8.12 -2.39 -0.02 2.56 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 2.46 8.12 -2.38 -0.02 2.44 16 39 H 0.00 0.04 6.58 -2.39 -0.02 0.02 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.09 1.92 5.74 -2.39 -0.01 1.91 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.22 305.09 2.00 -68.23 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.68 Total: 8.55 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.32 Total: -31.38 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.95 Total: -81.26 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.71 Total: -18.07 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 1.66 Total: 53.93 kcal Total: -70.22 2.00 -68.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686255687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.923 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds