Wall clock time and date at job start Mon Mar 30 2020 07:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.55283 * 2 1 4 4 C 1.55001 * 110.61933 * 237.12084 * 2 1 3 5 5 C 1.54817 * 102.09169 * 204.47380 * 4 2 1 6 6 H 1.08995 * 110.48963 * 262.20737 * 5 4 2 7 7 C 1.52995 * 110.48444 * 139.55320 * 5 4 2 8 8 N 1.46902 * 109.46973 * 70.23520 * 7 5 4 9 9 C 1.46899 * 111.00169 * 179.97438 * 8 7 5 10 10 C 1.53008 * 109.47284 * 174.70367 * 9 8 7 11 11 C 1.50700 * 115.54653 * 65.17133 * 10 9 8 12 12 H 1.08005 * 119.99881 * 264.96512 * 11 10 9 13 13 C 1.37870 * 120.00235 * 84.96776 * 11 10 9 14 14 N 1.31521 * 120.00059 * 353.06068 * 13 11 10 15 15 Si 1.86796 * 120.00420 * 173.05863 * 13 11 10 16 16 H 1.48501 * 109.46926 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46986 * 119.99734 * 15 13 11 18 18 H 1.48492 * 109.47459 * 240.00259 * 15 13 11 19 19 C 1.52996 * 117.49525 * 279.50367 * 10 9 8 20 20 C 1.52997 * 117.50053 * 210.84233 * 10 9 8 21 21 C 1.54106 * 104.18658 * 20.88517 * 5 4 2 22 22 H 1.09006 * 109.87360 * 242.45442 * 21 5 4 23 23 C 1.52999 * 109.88067 * 121.45270 * 21 5 4 24 24 O 1.43749 * 107.41931 * 1.94981 * 21 5 4 25 25 H 1.09002 * 109.46716 * 182.87745 * 1 2 3 26 26 H 1.08993 * 109.47212 * 302.88081 * 1 2 3 27 27 H 1.09005 * 109.46848 * 62.88025 * 1 2 3 28 28 H 1.09001 * 110.90566 * 86.28062 * 4 2 1 29 29 H 1.08995 * 110.93753 * 322.68378 * 4 2 1 30 30 H 1.08999 * 109.47384 * 190.23362 * 7 5 4 31 31 H 1.08999 * 109.47779 * 310.23918 * 7 5 4 32 32 H 1.00901 * 110.99700 * 56.04453 * 8 7 5 33 33 H 1.09000 * 109.47345 * 294.70102 * 9 8 7 34 34 H 1.08998 * 109.47004 * 54.70558 * 9 8 7 35 35 H 0.96999 * 119.99967 * 185.03388 * 14 13 11 36 36 H 1.09000 * 117.50109 * 359.97438 * 19 10 9 37 37 H 1.09003 * 117.49494 * 145.02200 * 19 10 9 38 38 H 1.08990 * 117.49792 * 214.98127 * 20 10 9 39 39 H 1.09008 * 117.49688 * 359.97438 * 20 10 9 40 40 H 1.08996 * 109.47191 * 60.30283 * 23 21 5 41 41 H 1.09000 * 109.46596 * 300.30248 * 23 21 5 42 42 H 1.08994 * 109.47073 * 180.30529 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4796 -1.2156 -0.7253 6 1 4.2407 -0.5315 -1.1004 7 6 3.7855 -2.6501 -1.1605 8 7 3.9899 -2.6876 -2.6147 9 6 4.2872 -4.0524 -3.0696 10 6 4.3629 -4.0756 -4.5976 11 6 5.4907 -3.2815 -5.2046 12 1 5.3202 -2.2677 -5.5358 13 6 6.7402 -3.8490 -5.3372 14 7 6.9850 -5.0299 -4.8125 15 14 8.0853 -2.9410 -6.2620 16 1 7.5589 -1.6415 -6.7513 17 1 9.2340 -2.6983 -5.3527 18 1 8.5324 -3.7608 -7.4166 19 6 3.0430 -4.1318 -5.3695 20 6 3.9463 -5.3661 -5.3061 21 6 3.3839 -1.1267 0.8102 22 1 4.0873 -0.3819 1.1828 23 6 3.6935 -2.4905 1.4307 24 8 2.0396 -0.7354 1.1357 25 1 -0.3633 -1.0264 0.0516 26 1 -0.3633 0.5579 0.8630 27 1 -0.3633 0.4685 -0.9147 28 1 2.1510 -0.1444 -2.0952 29 1 1.4553 -1.6585 -1.4289 30 1 4.6879 -2.9978 -0.6577 31 1 2.9493 -3.2968 -0.8945 32 1 4.7178 -2.0470 -2.8941 33 1 5.2419 -4.3742 -2.6537 34 1 3.4991 -4.7267 -2.7346 35 1 7.8824 -5.3971 -4.8419 36 1 2.1209 -4.1527 -4.7887 37 1 2.9907 -3.5948 -6.3166 38 1 4.4877 -5.6405 -6.2113 39 1 3.6186 -6.1988 -4.6835 40 1 4.7032 -2.7945 1.1547 41 1 2.9791 -3.2273 1.0634 42 1 3.6187 -2.4214 2.5158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686510375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:15 Heat of formation + Delta-G solvation = -34.582956 kcal Electronic energy + Delta-G solvation = -19370.019967 eV Core-core repulsion = 16543.187371 eV Total energy + Delta-G solvation = -2826.832596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81986 -36.93890 -34.94143 -32.70210 -31.95473 -31.70027 -28.75077 -26.35684 -25.25305 -23.75993 -22.69614 -21.17878 -20.93467 -19.63413 -18.82769 -16.71724 -15.90558 -15.67314 -15.17853 -14.67948 -14.46804 -14.15061 -14.01304 -13.63062 -12.99650 -12.66015 -12.47948 -12.26537 -12.04952 -11.90733 -11.73351 -11.55562 -11.27817 -11.00737 -10.96624 -10.84091 -10.62189 -10.48114 -10.41069 -10.31710 -10.10862 -9.55194 -9.36980 -8.73183 -8.42078 -8.04661 -7.44966 -6.02612 -4.08519 3.25971 3.35411 3.39140 3.84029 4.39324 4.54056 4.77492 4.86875 5.00936 5.17408 5.25337 5.28164 5.33078 5.45991 5.54937 5.60369 5.64639 5.68182 5.83489 5.88740 5.93708 6.04118 6.07310 6.19471 6.22304 6.26941 6.33043 6.43211 6.50717 6.60451 6.86637 6.86687 6.93802 7.04447 7.18981 7.54366 7.57865 7.88302 8.01728 8.30156 8.51085 8.95079 9.57117 11.05347 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.004970 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.184092 B = 5632.426298 C = 5886.356014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.128 4.128 5 C -0.115 4.115 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.681 5.681 9 C 0.107 3.893 10 C 0.050 3.950 11 C -0.491 4.491 12 H 0.060 0.940 13 C 0.070 3.930 14 N -0.880 5.880 15 Si 0.886 3.114 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.200 4.200 20 C -0.163 4.163 21 C 0.078 3.922 22 H 0.063 0.937 23 C -0.153 4.153 24 O -0.376 6.376 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.258 0.742 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 7.156 9.724 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.165 4.165 5 C -0.135 4.135 6 H 0.099 0.901 7 C -0.062 4.062 8 N -0.312 5.312 9 C -0.022 4.022 10 C 0.050 3.950 11 C -0.529 4.529 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.517 5.517 15 Si 0.714 3.286 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.237 4.237 20 C -0.201 4.201 21 C 0.020 3.980 22 H 0.081 0.919 23 C -0.210 4.210 24 O -0.296 6.296 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.425 6.881 9.742 14.603 hybrid contribution 1.951 0.275 -0.372 2.006 sum -6.474 7.156 9.370 13.451 Atomic orbital electron populations 1.21748 0.93504 1.02859 1.02009 1.23198 0.94924 0.95181 0.85824 0.91753 1.23075 0.95460 1.00658 0.97348 1.22539 0.98402 0.98535 0.93978 0.90128 1.22083 0.99580 0.94378 0.90187 1.60432 1.51372 1.09848 1.09550 1.21405 0.97089 0.87297 0.96371 1.18742 0.91553 0.95895 0.88838 1.20499 0.93393 0.99029 1.40004 0.92186 1.25005 0.98479 0.94587 0.95256 1.70006 1.20483 1.16843 1.44403 0.86630 0.81929 0.79993 0.80018 1.19694 1.21211 1.21026 1.22861 0.94989 1.03668 1.02209 1.22532 1.03459 0.91158 1.02983 1.22681 0.84507 0.96513 0.94274 0.91881 1.22022 1.02255 0.96153 1.00603 1.88897 1.28060 1.73570 1.39051 0.91801 0.92365 0.91170 0.90197 0.90072 0.95507 0.91565 0.83639 0.94757 0.94613 0.93194 0.91736 0.90964 0.90384 0.92235 0.90924 0.91543 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.66 37.16 0.36 -1.09 16 2 C 0.07 0.78 3.97 -25.67 -0.10 0.68 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -1.65 6.03 -24.72 -0.15 -1.80 16 5 C -0.12 -1.56 3.21 -89.09 -0.29 -1.84 16 6 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 7 C 0.07 1.06 3.81 -3.83 -0.01 1.04 16 8 N -0.68 -12.93 6.36 -113.78 -0.72 -13.66 16 9 C 0.11 2.37 5.54 -3.82 -0.02 2.35 16 10 C 0.05 1.23 1.56 -155.66 -0.24 0.98 16 11 C -0.49 -13.01 8.32 -34.44 -0.29 -13.30 16 12 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 13 C 0.07 1.86 5.39 -17.82 -0.10 1.77 16 14 N -0.88 -24.58 12.95 55.43 0.72 -23.87 16 15 Si 0.89 20.76 29.55 -169.99 -5.02 15.74 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.20 -4.47 9.96 -26.69 -0.27 -4.74 16 20 C -0.16 -3.89 9.46 -26.69 -0.25 -4.14 16 21 C 0.08 1.00 4.05 -26.15 -0.11 0.89 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.15 -1.84 8.38 37.16 0.31 -1.53 16 24 O -0.38 -5.19 10.91 -35.23 -0.38 -5.57 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 30 H 0.03 0.43 6.42 -51.93 -0.33 0.09 16 31 H 0.07 1.05 6.98 -51.93 -0.36 0.69 16 32 H 0.35 6.88 8.30 -39.29 -0.33 6.55 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 40 H 0.07 0.84 6.74 -51.93 -0.35 0.49 16 41 H 0.07 0.84 6.84 -51.93 -0.36 0.48 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -27.62 333.45 -9.13 -36.75 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.59 Total: 6.31 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.15 Total: -20.73 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.01 Total: -37.52 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.38 Total: -5.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.62 -9.13 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686510375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.166 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds