Wall clock time and date at job start Mon Mar 30 2020 07:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.55283 * 2 1 4 4 C 1.55001 * 110.61933 * 237.12084 * 2 1 3 5 5 C 1.54817 * 102.09169 * 204.47380 * 4 2 1 6 6 H 1.08995 * 110.48963 * 262.20737 * 5 4 2 7 7 C 1.52995 * 110.48444 * 139.55320 * 5 4 2 8 8 N 1.46902 * 109.46973 * 70.23520 * 7 5 4 9 9 C 1.46899 * 111.00169 * 179.97438 * 8 7 5 10 10 C 1.53008 * 109.47284 * 174.70367 * 9 8 7 11 11 C 1.50700 * 115.54653 * 65.17133 * 10 9 8 12 12 H 1.08005 * 119.99881 * 264.96512 * 11 10 9 13 13 C 1.37870 * 120.00235 * 84.96776 * 11 10 9 14 14 N 1.31521 * 120.00059 * 353.06068 * 13 11 10 15 15 Si 1.86796 * 120.00420 * 173.05863 * 13 11 10 16 16 H 1.48501 * 109.46926 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46986 * 119.99734 * 15 13 11 18 18 H 1.48492 * 109.47459 * 240.00259 * 15 13 11 19 19 C 1.52996 * 117.49525 * 279.50367 * 10 9 8 20 20 C 1.52997 * 117.50053 * 210.84233 * 10 9 8 21 21 C 1.54106 * 104.18658 * 20.88517 * 5 4 2 22 22 H 1.09006 * 109.87360 * 242.45442 * 21 5 4 23 23 C 1.52999 * 109.88067 * 121.45270 * 21 5 4 24 24 O 1.43749 * 107.41931 * 1.94981 * 21 5 4 25 25 H 1.09002 * 109.46716 * 182.87745 * 1 2 3 26 26 H 1.08993 * 109.47212 * 302.88081 * 1 2 3 27 27 H 1.09005 * 109.46848 * 62.88025 * 1 2 3 28 28 H 1.09001 * 110.90566 * 86.28062 * 4 2 1 29 29 H 1.08995 * 110.93753 * 322.68378 * 4 2 1 30 30 H 1.08999 * 109.47384 * 190.23362 * 7 5 4 31 31 H 1.08999 * 109.47779 * 310.23918 * 7 5 4 32 32 H 1.00901 * 110.99700 * 56.04453 * 8 7 5 33 33 H 1.09000 * 109.47345 * 294.70102 * 9 8 7 34 34 H 1.08998 * 109.47004 * 54.70558 * 9 8 7 35 35 H 0.96999 * 119.99967 * 185.03388 * 14 13 11 36 36 H 1.09000 * 117.50109 * 359.97438 * 19 10 9 37 37 H 1.09003 * 117.49494 * 145.02200 * 19 10 9 38 38 H 1.08990 * 117.49792 * 214.98127 * 20 10 9 39 39 H 1.09008 * 117.49688 * 359.97438 * 20 10 9 40 40 H 1.08996 * 109.47191 * 60.30283 * 23 21 5 41 41 H 1.09000 * 109.46596 * 300.30248 * 23 21 5 42 42 H 1.08994 * 109.47073 * 180.30529 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4796 -1.2156 -0.7253 6 1 4.2407 -0.5315 -1.1004 7 6 3.7855 -2.6501 -1.1605 8 7 3.9899 -2.6876 -2.6147 9 6 4.2872 -4.0524 -3.0696 10 6 4.3629 -4.0756 -4.5976 11 6 5.4907 -3.2815 -5.2046 12 1 5.3202 -2.2677 -5.5358 13 6 6.7402 -3.8490 -5.3372 14 7 6.9850 -5.0299 -4.8125 15 14 8.0853 -2.9410 -6.2620 16 1 7.5589 -1.6415 -6.7513 17 1 9.2340 -2.6983 -5.3527 18 1 8.5324 -3.7608 -7.4166 19 6 3.0430 -4.1318 -5.3695 20 6 3.9463 -5.3661 -5.3061 21 6 3.3839 -1.1267 0.8102 22 1 4.0873 -0.3819 1.1828 23 6 3.6935 -2.4905 1.4307 24 8 2.0396 -0.7354 1.1357 25 1 -0.3633 -1.0264 0.0516 26 1 -0.3633 0.5579 0.8630 27 1 -0.3633 0.4685 -0.9147 28 1 2.1510 -0.1444 -2.0952 29 1 1.4553 -1.6585 -1.4289 30 1 4.6879 -2.9978 -0.6577 31 1 2.9493 -3.2968 -0.8945 32 1 4.7178 -2.0470 -2.8941 33 1 5.2419 -4.3742 -2.6537 34 1 3.4991 -4.7267 -2.7346 35 1 7.8824 -5.3971 -4.8419 36 1 2.1209 -4.1527 -4.7887 37 1 2.9907 -3.5948 -6.3166 38 1 4.4877 -5.6405 -6.2113 39 1 3.6186 -6.1988 -4.6835 40 1 4.7032 -2.7945 1.1547 41 1 2.9791 -3.2273 1.0634 42 1 3.6187 -2.4214 2.5158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686510375.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:14 Heat of formation + Delta-G solvation = -50.448783 kcal Electronic energy + Delta-G solvation = -19370.707961 eV Core-core repulsion = 16543.187371 eV Total energy + Delta-G solvation = -2827.520590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85885 -38.71661 -36.35299 -33.97813 -33.68166 -32.98048 -29.70565 -27.99600 -27.06856 -24.89052 -24.09266 -22.80218 -22.12419 -21.14888 -20.35649 -17.93370 -17.68382 -16.69537 -16.60972 -16.49833 -15.85289 -15.47333 -15.39292 -15.13507 -14.44180 -13.97556 -13.60775 -13.37358 -13.33820 -13.18646 -12.97278 -12.90884 -12.84572 -12.75579 -12.69269 -12.26448 -12.07911 -11.99301 -11.63068 -11.56904 -11.46208 -11.21157 -10.70259 -10.53074 -10.38888 -9.91658 -9.05255 -8.07395 -6.18310 1.39799 1.44424 1.54029 2.43765 2.88848 3.20769 3.23780 3.63686 3.72368 3.84063 4.05584 4.11081 4.26712 4.35888 4.40767 4.46572 4.55697 4.62263 4.66087 4.70996 4.73102 4.77690 4.83679 4.95752 4.99796 5.02402 5.06179 5.09478 5.20566 5.22962 5.26644 5.29749 5.34475 5.35376 5.67364 5.70330 5.81982 6.07320 6.37867 6.49949 6.68519 6.91249 7.49860 9.00219 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.004970 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.184092 B = 5632.426298 C = 5886.356014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.077 0.923 4 C -0.126 4.126 5 C -0.112 4.112 6 H 0.084 0.916 7 C 0.072 3.928 8 N -0.676 5.676 9 C 0.122 3.878 10 C 0.027 3.973 11 C -0.499 4.499 12 H 0.053 0.947 13 C 0.026 3.974 14 N -0.909 5.909 15 Si 0.946 3.054 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.286 1.286 19 C -0.177 4.177 20 C -0.170 4.170 21 C 0.079 3.921 22 H 0.076 0.924 23 C -0.152 4.152 24 O -0.391 6.391 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.339 0.661 33 H 0.003 0.997 34 H 0.042 0.958 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 8.503 10.153 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.131 4.131 6 H 0.102 0.898 7 C -0.057 4.057 8 N -0.307 5.307 9 C -0.007 4.007 10 C 0.026 3.974 11 C -0.537 4.537 12 H 0.072 0.928 13 C -0.174 4.174 14 N -0.548 5.548 15 Si 0.773 3.227 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.213 1.213 19 C -0.214 4.214 20 C -0.209 4.209 21 C 0.021 3.979 22 H 0.094 0.906 23 C -0.209 4.209 24 O -0.312 6.312 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.021 0.979 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.008 8.241 10.175 15.894 hybrid contribution 2.087 -0.144 -0.497 2.150 sum -6.922 8.098 9.679 14.393 Atomic orbital electron populations 1.21761 0.92252 1.02683 1.03210 1.23332 0.95984 0.95297 0.84544 0.90509 1.23035 0.94829 1.00396 0.98075 1.22493 0.98925 0.96843 0.94866 0.89797 1.22100 0.99418 0.96113 0.88058 1.60409 1.50624 1.07901 1.11744 1.21121 0.95683 0.89018 0.94895 1.18914 0.92262 0.96040 0.90174 1.20704 0.94288 0.98918 1.39808 0.92841 1.25647 1.00516 0.95333 0.95950 1.70111 1.20849 1.18149 1.45646 0.85686 0.79435 0.78956 0.78633 1.19096 1.20821 1.21260 1.22830 0.94839 1.01832 1.01908 1.22456 1.04232 0.91854 1.02310 1.22721 0.84573 0.97156 0.93450 0.90634 1.22006 1.02046 0.95626 1.01223 1.88887 1.28454 1.73960 1.39891 0.92625 0.91542 0.89655 0.89907 0.91361 0.95579 0.91713 0.84274 0.97863 0.93940 0.93320 0.89733 0.90963 0.92616 0.91270 0.90727 0.92453 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.66 71.98 0.70 -1.88 16 2 C 0.07 1.41 3.97 31.28 0.12 1.54 16 3 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 4 C -0.13 -3.05 6.03 31.90 0.19 -2.86 16 5 C -0.11 -2.87 3.21 -9.80 -0.03 -2.90 16 6 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 7 C 0.07 2.21 3.81 86.30 0.33 2.53 16 8 N -0.68 -25.26 6.36 -513.88 -3.27 -28.53 16 9 C 0.12 5.39 5.54 86.31 0.48 5.87 16 10 C 0.03 1.30 1.56 -52.93 -0.08 1.21 16 11 C -0.50 -26.40 8.32 25.60 0.21 -26.19 16 12 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 13 C 0.03 1.37 5.39 84.65 0.46 1.82 16 14 N -0.91 -51.29 12.95 21.45 0.28 -51.01 16 15 Si 0.95 42.62 29.55 68.60 2.03 44.65 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 C -0.18 -7.69 9.96 30.62 0.30 -7.38 16 20 C -0.17 -8.10 9.46 30.62 0.29 -7.81 16 21 C 0.08 1.88 4.05 30.97 0.13 2.00 16 22 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 23 C -0.15 -3.45 8.38 71.98 0.60 -2.85 16 24 O -0.39 -10.09 10.91 -148.98 -1.63 -11.72 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.84 7.68 -2.39 -0.02 1.82 16 30 H 0.03 0.81 6.42 -2.39 -0.02 0.80 16 31 H 0.06 2.01 6.98 -2.39 -0.02 1.99 16 32 H 0.34 13.38 8.30 -89.69 -0.74 12.63 16 33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 35 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 36 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.07 1.65 6.74 -2.39 -0.02 1.63 16 41 H 0.06 1.39 6.84 -2.39 -0.02 1.38 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -57.44 333.45 1.34 -56.10 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.23 Total: 27.38 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 3.70 Total: -36.88 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.99 Total: -79.53 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -1.63 Total: -11.72 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -57.44 1.34 -56.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686510375.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.655 kcal (2) G-P(sol) polarization free energy of solvation -57.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds