Wall clock time and date at job start Mon Mar 30 2020 07:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.42298 * 2 1 4 4 C 1.54480 * 110.37201 * 237.68873 * 2 1 3 5 5 C 1.54511 * 104.06150 * 217.19524 * 4 2 1 6 6 H 1.09002 * 110.62653 * 118.70442 * 5 4 2 7 7 C 1.53006 * 110.51145 * 241.35309 * 5 4 2 8 8 N 1.46903 * 109.47167 * 289.64378 * 7 5 4 9 9 C 1.46893 * 110.99923 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47245 * 185.42445 * 9 8 7 11 11 C 1.50701 * 115.54605 * 39.53037 * 10 9 8 12 12 H 1.08000 * 119.99902 * 264.89621 * 11 10 9 13 13 C 1.37878 * 120.00208 * 84.90917 * 11 10 9 14 14 N 1.31513 * 119.99665 * 353.37109 * 13 11 10 15 15 Si 1.86798 * 120.00002 * 173.37951 * 13 11 10 16 16 H 1.48496 * 109.47187 * 59.99881 * 15 13 11 17 17 H 1.48504 * 109.46867 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47374 * 299.99260 * 15 13 11 19 19 C 1.52990 * 117.49847 * 253.82570 * 10 9 8 20 20 C 1.53000 * 117.49964 * 185.19977 * 10 9 8 21 21 C 1.54476 * 104.06399 * 0.02562 * 5 4 2 22 22 H 1.09005 * 110.36763 * 265.03644 * 21 5 4 23 23 C 1.53002 * 110.37365 * 142.81472 * 21 5 4 24 24 O 1.44425 * 104.80471 * 23.97800 * 21 5 4 25 25 H 1.09000 * 109.46783 * 299.15076 * 1 2 3 26 26 H 1.09002 * 109.46785 * 59.13975 * 1 2 3 27 27 H 1.08996 * 109.47816 * 179.14256 * 1 2 3 28 28 H 1.08996 * 110.51293 * 98.54925 * 4 2 1 29 29 H 1.09000 * 110.51036 * 335.83569 * 4 2 1 30 30 H 1.08998 * 109.46993 * 169.64309 * 7 5 4 31 31 H 1.09000 * 109.46694 * 49.64216 * 7 5 4 32 32 H 1.00903 * 110.99817 * 303.95549 * 8 7 5 33 33 H 1.09005 * 109.47394 * 305.42226 * 9 8 7 34 34 H 1.08997 * 109.47357 * 65.42470 * 9 8 7 35 35 H 0.97000 * 120.00055 * 180.02562 * 14 13 11 36 36 H 1.09008 * 117.50323 * 359.97438 * 19 10 9 37 37 H 1.09001 * 117.50254 * 145.02161 * 19 10 9 38 38 H 1.08996 * 117.49708 * 214.97599 * 20 10 9 39 39 H 1.08994 * 117.49942 * 0.02562 * 20 10 9 40 40 H 1.08995 * 109.47327 * 59.99602 * 23 21 5 41 41 H 1.08996 * 109.47174 * 179.97438 * 23 21 5 42 42 H 1.08998 * 109.46391 * 299.99480 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 6 2.0678 -0.7741 -1.2239 5 6 3.3177 -1.5058 -0.6858 6 1 3.1978 -2.5857 -0.7731 7 6 4.5715 -1.0450 -1.4319 8 7 4.5378 -1.5565 -2.8086 9 6 5.7285 -1.1323 -3.5571 10 6 5.5944 -1.5671 -5.0179 11 6 4.2173 -1.4270 -5.6138 12 1 3.5445 -2.2718 -5.6232 13 6 3.8165 -0.2205 -6.1475 14 7 4.5822 0.8412 -6.0208 15 14 2.1860 -0.0941 -7.0500 16 1 1.0808 -0.4642 -6.1298 17 1 1.9893 1.2996 -7.5238 18 1 2.1914 -1.0167 -8.2136 19 6 6.4505 -2.7457 -5.4855 20 6 6.7912 -1.3249 -5.9398 21 6 3.3869 -1.0878 0.7997 22 1 4.0535 -0.2342 0.9230 23 6 3.8596 -2.2603 1.6615 24 8 2.0322 -0.7245 1.1443 25 1 -0.3633 0.5006 0.8975 26 1 -0.3633 0.5272 -0.8822 27 1 -0.3634 -1.0275 -0.0154 28 1 2.3430 -0.0840 -2.0215 29 1 1.3275 -1.4920 -1.5772 30 1 5.4573 -1.4265 -0.9241 31 1 4.6037 0.0444 -1.4498 32 1 4.4426 -2.5609 -2.8189 33 1 5.8211 -0.0473 -3.5080 34 1 6.6149 -1.5927 -3.1209 35 1 4.3001 1.6901 -6.3959 36 1 7.1096 -3.2111 -4.7526 37 1 6.0178 -3.4202 -6.2244 38 1 6.5825 -1.0648 -6.9774 39 1 7.6742 -0.8562 -5.5055 40 1 4.8506 -2.5752 1.3346 41 1 3.9035 -1.9495 2.7053 42 1 3.1619 -3.0913 1.5585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686510378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:35 Heat of formation + Delta-G solvation = -34.160265 kcal Electronic energy + Delta-G solvation = -19469.797229 eV Core-core repulsion = 16642.982962 eV Total energy + Delta-G solvation = -2826.814266 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64679 -36.96543 -34.82673 -32.64256 -31.80834 -31.62714 -28.87737 -26.28685 -25.16480 -23.70461 -22.04875 -21.25490 -21.02514 -20.08598 -18.92886 -16.23526 -15.77638 -15.68443 -15.27194 -14.68151 -14.31674 -14.03308 -13.75431 -13.26151 -13.00890 -12.90811 -12.72108 -12.25390 -11.96166 -11.86602 -11.71702 -11.50498 -11.30767 -11.03321 -10.86762 -10.68807 -10.49288 -10.40638 -10.34530 -10.28687 -10.07463 -9.57904 -9.38562 -8.77286 -8.28075 -7.98749 -7.39751 -5.88286 -3.88280 3.39256 3.43171 3.46462 3.94569 4.52227 4.61068 4.83122 5.04781 5.11861 5.22631 5.35483 5.37353 5.40177 5.45635 5.52997 5.59323 5.63391 5.72996 5.87909 5.96075 6.03399 6.07731 6.13227 6.17524 6.23960 6.29669 6.33629 6.49722 6.54276 6.57087 6.65018 6.76522 6.97615 7.07392 7.13725 7.49089 7.51080 8.02983 8.06833 8.28131 8.61139 9.07352 9.73757 11.22397 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.006455 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.674970 B = 4336.626063 C = 5439.382892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.134 4.134 5 C -0.110 4.110 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.655 5.655 9 C 0.110 3.890 10 C 0.049 3.951 11 C -0.461 4.461 12 H 0.056 0.944 13 C 0.073 3.927 14 N -0.885 5.885 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.219 4.219 20 C -0.159 4.159 21 C 0.074 3.926 22 H 0.066 0.934 23 C -0.143 4.143 24 O -0.376 6.376 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.330 0.670 33 H 0.069 0.931 34 H -0.008 1.008 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -2.872 11.910 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.172 4.172 5 C -0.129 4.129 6 H 0.097 0.903 7 C -0.061 4.061 8 N -0.284 5.284 9 C -0.019 4.019 10 C 0.048 3.952 11 C -0.499 4.499 12 H 0.074 0.926 13 C -0.129 4.129 14 N -0.523 5.523 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.256 4.256 20 C -0.197 4.197 21 C 0.016 3.984 22 H 0.084 0.916 23 C -0.201 4.201 24 O -0.296 6.296 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.709 -2.189 11.823 12.326 hybrid contribution 0.029 -0.291 -0.367 0.469 sum -2.679 -2.480 11.456 12.024 Atomic orbital electron populations 1.21781 0.93624 1.02642 1.02060 1.23044 0.94949 0.95495 0.85622 0.91710 1.22936 0.96578 0.99960 0.97712 1.22532 0.96071 1.00886 0.93417 0.90287 1.21937 0.94036 1.00218 0.89884 1.60183 1.42313 1.15882 1.10033 1.21457 0.86867 0.99815 0.93767 1.18895 0.92113 0.94131 0.90060 1.20098 0.96911 0.96280 1.36633 0.92626 1.24842 0.96333 0.95709 0.96006 1.69995 1.37408 0.99701 1.45178 0.86790 0.84990 0.76652 0.80237 1.20265 1.21667 1.20658 1.23084 1.06225 0.92115 1.04197 1.22483 0.99787 0.96488 1.00906 1.22961 0.84631 0.96993 0.93810 0.91602 1.21783 1.01214 0.97475 0.99603 1.89082 1.27084 1.74634 1.38752 0.92411 0.91114 0.91988 0.88889 0.90974 0.96735 0.91416 0.85289 0.91278 0.99032 0.93463 0.92188 0.90608 0.90120 0.92214 0.91302 0.92285 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.52 37.16 0.35 -1.36 16 2 C 0.07 0.92 3.92 -25.95 -0.10 0.81 16 3 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -2.04 6.16 -25.16 -0.16 -2.20 16 5 C -0.11 -1.58 2.83 -89.05 -0.25 -1.84 16 6 H 0.08 1.12 7.87 -51.93 -0.41 0.72 16 7 C 0.07 1.12 4.76 -3.82 -0.02 1.10 16 8 N -0.65 -12.79 5.68 -113.78 -0.65 -13.44 16 9 C 0.11 2.40 5.76 -3.83 -0.02 2.38 16 10 C 0.05 1.17 1.74 -155.66 -0.27 0.90 16 11 C -0.46 -12.31 8.15 -34.44 -0.28 -12.59 16 12 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 14 N -0.88 -25.03 12.95 55.43 0.72 -24.31 16 15 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C -0.22 -4.74 9.88 -26.74 -0.26 -5.00 16 20 C -0.16 -3.72 9.48 -26.73 -0.25 -3.97 16 21 C 0.07 0.98 3.48 -25.96 -0.09 0.89 16 22 H 0.07 0.85 7.87 -51.93 -0.41 0.45 16 23 C -0.14 -1.59 9.52 37.16 0.35 -1.24 16 24 O -0.38 -5.52 11.04 -35.23 -0.39 -5.91 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 29 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 1.17 8.11 -51.93 -0.42 0.74 16 32 H 0.33 6.16 8.79 -39.29 -0.35 5.82 16 33 H 0.07 1.67 8.13 -51.93 -0.42 1.25 16 34 H -0.01 -0.17 7.94 -51.93 -0.41 -0.58 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.06 1.17 8.08 -51.92 -0.42 0.75 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -28.06 339.16 -9.17 -37.23 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.84 Total: 5.22 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.10 Total: -20.22 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.07 Total: -37.75 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.39 Total: -5.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.06 -9.17 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686510378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.067 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds