Wall clock time and date at job start Mon Mar 30 2020 07:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.42298 * 2 1 4 4 C 1.54480 * 110.37201 * 237.68873 * 2 1 3 5 5 C 1.54511 * 104.06150 * 217.19524 * 4 2 1 6 6 H 1.09002 * 110.62653 * 118.70442 * 5 4 2 7 7 C 1.53006 * 110.51145 * 241.35309 * 5 4 2 8 8 N 1.46903 * 109.47167 * 289.64378 * 7 5 4 9 9 C 1.46893 * 110.99923 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47245 * 185.42445 * 9 8 7 11 11 C 1.50701 * 115.54605 * 39.53037 * 10 9 8 12 12 H 1.08000 * 119.99902 * 264.89621 * 11 10 9 13 13 C 1.37878 * 120.00208 * 84.90917 * 11 10 9 14 14 N 1.31513 * 119.99665 * 353.37109 * 13 11 10 15 15 Si 1.86798 * 120.00002 * 173.37951 * 13 11 10 16 16 H 1.48496 * 109.47187 * 59.99881 * 15 13 11 17 17 H 1.48504 * 109.46867 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47374 * 299.99260 * 15 13 11 19 19 C 1.52990 * 117.49847 * 253.82570 * 10 9 8 20 20 C 1.53000 * 117.49964 * 185.19977 * 10 9 8 21 21 C 1.54476 * 104.06399 * 0.02562 * 5 4 2 22 22 H 1.09005 * 110.36763 * 265.03644 * 21 5 4 23 23 C 1.53002 * 110.37365 * 142.81472 * 21 5 4 24 24 O 1.44425 * 104.80471 * 23.97800 * 21 5 4 25 25 H 1.09000 * 109.46783 * 299.15076 * 1 2 3 26 26 H 1.09002 * 109.46785 * 59.13975 * 1 2 3 27 27 H 1.08996 * 109.47816 * 179.14256 * 1 2 3 28 28 H 1.08996 * 110.51293 * 98.54925 * 4 2 1 29 29 H 1.09000 * 110.51036 * 335.83569 * 4 2 1 30 30 H 1.08998 * 109.46993 * 169.64309 * 7 5 4 31 31 H 1.09000 * 109.46694 * 49.64216 * 7 5 4 32 32 H 1.00903 * 110.99817 * 303.95549 * 8 7 5 33 33 H 1.09005 * 109.47394 * 305.42226 * 9 8 7 34 34 H 1.08997 * 109.47357 * 65.42470 * 9 8 7 35 35 H 0.97000 * 120.00055 * 180.02562 * 14 13 11 36 36 H 1.09008 * 117.50323 * 359.97438 * 19 10 9 37 37 H 1.09001 * 117.50254 * 145.02161 * 19 10 9 38 38 H 1.08996 * 117.49708 * 214.97599 * 20 10 9 39 39 H 1.08994 * 117.49942 * 0.02562 * 20 10 9 40 40 H 1.08995 * 109.47327 * 59.99602 * 23 21 5 41 41 H 1.08996 * 109.47174 * 179.97438 * 23 21 5 42 42 H 1.08998 * 109.46391 * 299.99480 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 6 2.0678 -0.7741 -1.2239 5 6 3.3177 -1.5058 -0.6858 6 1 3.1978 -2.5857 -0.7731 7 6 4.5715 -1.0450 -1.4319 8 7 4.5378 -1.5565 -2.8086 9 6 5.7285 -1.1323 -3.5571 10 6 5.5944 -1.5671 -5.0179 11 6 4.2173 -1.4270 -5.6138 12 1 3.5445 -2.2718 -5.6232 13 6 3.8165 -0.2205 -6.1475 14 7 4.5822 0.8412 -6.0208 15 14 2.1860 -0.0941 -7.0500 16 1 1.0808 -0.4642 -6.1298 17 1 1.9893 1.2996 -7.5238 18 1 2.1914 -1.0167 -8.2136 19 6 6.4505 -2.7457 -5.4855 20 6 6.7912 -1.3249 -5.9398 21 6 3.3869 -1.0878 0.7997 22 1 4.0535 -0.2342 0.9230 23 6 3.8596 -2.2603 1.6615 24 8 2.0322 -0.7245 1.1443 25 1 -0.3633 0.5006 0.8975 26 1 -0.3633 0.5272 -0.8822 27 1 -0.3634 -1.0275 -0.0154 28 1 2.3430 -0.0840 -2.0215 29 1 1.3275 -1.4920 -1.5772 30 1 5.4573 -1.4265 -0.9241 31 1 4.6037 0.0444 -1.4498 32 1 4.4426 -2.5609 -2.8189 33 1 5.8211 -0.0473 -3.5080 34 1 6.6149 -1.5927 -3.1209 35 1 4.3001 1.6901 -6.3959 36 1 7.1096 -3.2111 -4.7526 37 1 6.0178 -3.4202 -6.2244 38 1 6.5825 -1.0648 -6.9774 39 1 7.6742 -0.8562 -5.5055 40 1 4.8506 -2.5752 1.3346 41 1 3.9035 -1.9495 2.7053 42 1 3.1619 -3.0913 1.5585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686510378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:31 Heat of formation + Delta-G solvation = -50.125219 kcal Electronic energy + Delta-G solvation = -19470.489521 eV Core-core repulsion = 16642.982962 eV Total energy + Delta-G solvation = -2827.506559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78308 -38.72523 -36.29691 -33.84781 -33.67280 -32.96815 -29.91228 -27.88100 -27.01987 -25.08501 -23.32846 -22.81204 -22.35514 -21.34901 -20.76411 -17.97598 -17.09908 -16.79486 -16.75511 -16.37888 -15.91007 -15.50072 -15.28048 -14.70740 -14.44976 -14.08982 -13.91406 -13.60511 -13.21265 -13.16406 -13.08620 -12.82275 -12.77968 -12.64587 -12.57256 -12.40390 -12.23746 -11.94257 -11.67391 -11.49785 -11.46033 -11.20814 -10.72625 -10.66100 -10.29823 -9.85127 -8.92001 -7.96708 -6.00469 1.45778 1.46238 1.52318 2.52078 2.89037 3.27247 3.35464 3.57048 3.71796 3.92143 3.93561 4.10785 4.28193 4.36321 4.40230 4.44074 4.47389 4.56568 4.62663 4.66595 4.74751 4.76594 4.84971 4.86521 4.96802 5.01911 5.06347 5.13169 5.15694 5.22192 5.26338 5.29145 5.31140 5.36006 5.65876 5.70120 5.91644 5.97816 6.41191 6.60751 6.82432 7.01098 7.63563 9.12962 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.006455 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.674970 B = 4336.626063 C = 5439.382892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.134 4.134 5 C -0.103 4.103 6 H 0.085 0.915 7 C 0.076 3.924 8 N -0.669 5.669 9 C 0.124 3.876 10 C 0.020 3.980 11 C -0.465 4.465 12 H 0.047 0.953 13 C 0.028 3.972 14 N -0.912 5.912 15 Si 0.937 3.063 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.277 1.277 19 C -0.190 4.190 20 C -0.167 4.167 21 C 0.074 3.926 22 H 0.068 0.932 23 C -0.140 4.140 24 O -0.385 6.385 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.336 0.664 33 H 0.037 0.963 34 H 0.011 0.989 35 H 0.252 0.748 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -4.056 13.143 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.172 4.172 5 C -0.122 4.122 6 H 0.103 0.897 7 C -0.053 4.053 8 N -0.300 5.300 9 C -0.005 4.005 10 C 0.020 3.980 11 C -0.503 4.503 12 H 0.065 0.935 13 C -0.171 4.171 14 N -0.552 5.552 15 Si 0.764 3.236 16 H -0.199 1.199 17 H -0.218 1.218 18 H -0.203 1.203 19 C -0.228 4.228 20 C -0.206 4.206 21 C 0.016 3.984 22 H 0.086 0.914 23 C -0.197 4.197 24 O -0.305 6.305 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.845 -3.392 13.062 13.791 hybrid contribution 0.090 0.055 -0.753 0.760 sum -2.755 -3.337 12.309 13.047 Atomic orbital electron populations 1.21774 0.92150 1.02959 1.02921 1.23076 0.96191 0.95131 0.84718 0.91743 1.22866 0.97155 0.99558 0.97597 1.22474 0.94649 1.00985 0.94124 0.89673 1.21880 0.95743 0.99181 0.88528 1.60054 1.41595 1.16399 1.11931 1.21151 0.88535 0.97885 0.92947 1.19057 0.91238 0.96473 0.91265 1.20323 0.98043 0.95762 1.36154 0.93469 1.25439 0.98992 0.95657 0.96973 1.70105 1.38831 0.99891 1.46347 0.85957 0.81947 0.76411 0.79269 1.19940 1.21791 1.20273 1.23066 1.04862 0.90961 1.03866 1.22397 1.00103 0.98528 0.99535 1.23055 0.84221 0.98007 0.93144 0.91401 1.21783 1.01764 0.96402 0.99712 1.89078 1.27782 1.74722 1.38944 0.91291 0.90540 0.91923 0.91795 0.91198 0.94823 0.93045 0.84566 0.94436 0.97094 0.93887 0.89264 0.90630 0.92591 0.91155 0.90003 0.91340 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.52 71.98 0.69 -2.49 16 2 C 0.07 1.77 3.92 31.10 0.12 1.89 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.13 -4.04 6.16 31.61 0.19 -3.85 16 5 C -0.10 -2.85 2.83 -9.78 -0.03 -2.87 16 6 H 0.08 2.26 7.87 -2.39 -0.02 2.24 16 7 C 0.08 2.39 4.76 86.30 0.41 2.80 16 8 N -0.67 -25.67 5.68 -513.88 -2.92 -28.59 16 9 C 0.12 5.35 5.76 86.31 0.50 5.85 16 10 C 0.02 0.97 1.74 -52.93 -0.09 0.88 16 11 C -0.46 -24.81 8.15 25.60 0.21 -24.60 16 12 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 13 C 0.03 1.54 5.39 84.66 0.46 2.00 16 14 N -0.91 -52.53 12.95 21.45 0.28 -52.25 16 15 Si 0.94 44.14 29.54 68.60 2.03 46.16 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 C -0.19 -7.86 9.88 30.59 0.30 -7.55 16 20 C -0.17 -7.79 9.48 30.59 0.29 -7.50 16 21 C 0.07 1.82 3.48 31.10 0.11 1.92 16 22 H 0.07 1.65 7.87 -2.38 -0.02 1.63 16 23 C -0.14 -2.72 9.52 71.98 0.68 -2.04 16 24 O -0.39 -10.70 11.04 -148.98 -1.64 -12.34 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 28 H 0.06 2.30 7.72 -2.39 -0.02 2.28 16 29 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 32 H 0.34 12.08 8.79 -89.69 -0.79 11.29 16 33 H 0.04 1.83 8.13 -2.38 -0.02 1.81 16 34 H 0.01 0.43 7.94 -2.39 -0.02 0.41 16 35 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.09 3.17 8.08 -2.38 -0.02 3.15 16 37 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -59.15 339.16 1.76 -57.39 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.17 Total: 25.20 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 3.84 Total: -35.57 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.64 Total: -80.84 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.64 Total: -12.34 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.15 1.76 -57.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686510378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.265 kcal (2) G-P(sol) polarization free energy of solvation -59.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds