Wall clock time and date at job start Mon Mar 30 2020 07:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00259 * 2 1 4 4 H 1.09005 * 109.50147 * 30.00668 * 3 2 1 5 5 C 1.53117 * 109.50696 * 269.92510 * 3 2 1 6 6 C 1.53120 * 109.16082 * 297.67340 * 5 3 2 7 7 C 1.53037 * 109.27952 * 302.34513 * 6 5 3 8 8 H 1.08997 * 109.46184 * 299.16642 * 7 6 5 9 9 C 1.52995 * 109.46385 * 179.18535 * 7 6 5 10 10 N 1.46849 * 109.52358 * 59.17624 * 7 6 5 11 11 C 1.46896 * 110.99982 * 174.16019 * 10 7 6 12 12 C 1.53006 * 109.47222 * 195.61969 * 11 10 7 13 13 C 1.50700 * 115.55255 * 268.85674 * 12 11 10 14 14 H 1.07999 * 119.99980 * 115.06752 * 13 12 11 15 15 C 1.37870 * 119.99944 * 295.06568 * 13 12 11 16 16 N 1.31526 * 119.99920 * 359.33817 * 15 13 12 17 17 Si 1.86793 * 120.00306 * 179.34088 * 15 13 12 18 18 H 1.48505 * 109.46946 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47598 * 119.99766 * 17 15 13 20 20 H 1.48500 * 109.47141 * 239.99929 * 17 15 13 21 21 C 1.53002 * 117.49712 * 123.14243 * 12 11 10 22 22 C 1.52997 * 60.00272 * 252.51644 * 21 12 11 23 23 C 1.46847 * 111.20194 * 298.26206 * 10 7 6 24 24 H 1.09002 * 109.46794 * 299.99888 * 1 2 3 25 25 H 1.09000 * 109.47048 * 59.99335 * 1 2 3 26 26 H 1.08991 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.52482 * 57.57882 * 5 3 2 28 28 H 1.09001 * 109.52321 * 177.76761 * 5 3 2 29 29 H 1.08999 * 109.50220 * 62.28443 * 6 5 3 30 30 H 1.09003 * 109.50530 * 182.40604 * 6 5 3 31 31 H 1.08998 * 109.47207 * 53.78177 * 9 7 6 32 32 H 1.09006 * 109.47268 * 173.78124 * 9 7 6 33 33 H 1.09001 * 109.47012 * 293.78016 * 9 7 6 34 34 H 1.08994 * 109.47350 * 315.62072 * 11 10 7 35 35 H 1.08996 * 109.47011 * 75.62563 * 11 10 7 36 36 H 0.96996 * 119.99964 * 185.01999 * 16 15 13 37 37 H 1.09003 * 117.49790 * 0.02562 * 21 12 11 38 38 H 1.08997 * 117.49613 * 145.02292 * 21 12 11 39 39 H 1.09006 * 117.49788 * 252.51502 * 22 21 12 40 40 H 1.08994 * 117.52072 * 107.47978 * 22 21 12 41 41 H 1.09000 * 109.45990 * 301.72591 * 23 10 7 42 42 H 1.08998 * 109.46304 * 181.75717 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3455 1.9998 0.5139 5 6 2.2200 1.7717 -1.4433 6 6 3.2017 0.8252 -2.1396 7 6 4.5175 0.7979 -1.3587 8 1 4.9478 1.7991 -1.3371 9 6 5.4947 -0.1624 -2.0396 10 7 4.2637 0.3449 0.0149 11 6 5.5218 0.1739 0.7538 12 6 5.2639 -0.6520 2.0157 13 6 4.9276 0.1397 3.2532 14 1 3.9523 0.0439 3.7071 15 6 5.8651 0.9862 3.8059 16 7 7.0573 1.0929 3.2607 17 14 5.4422 1.9814 5.3290 18 1 4.0476 1.6836 5.7434 19 1 6.3731 1.6227 6.4290 20 1 5.5694 3.4294 5.0253 21 6 6.0745 -1.9369 2.1970 22 6 4.5881 -2.0138 1.8429 23 6 3.3607 1.2643 0.7190 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2667 1.7610 -1.9717 28 1 2.6265 2.7831 -1.4439 29 1 2.7777 -0.1784 -2.1733 30 1 3.3881 1.1764 -3.1545 31 1 5.5987 0.1094 -3.0901 32 1 6.4666 -0.0994 -1.5501 33 1 5.1150 -1.1813 -1.9638 34 1 6.2460 -0.3422 0.1236 35 1 5.9147 1.1513 1.0333 36 1 7.7403 1.6316 3.6898 37 1 6.7918 -2.1936 1.4175 38 1 6.3649 -2.2097 3.2116 39 1 3.9005 -2.3372 2.6245 40 1 4.3268 -2.3210 0.8303 41 1 3.7964 2.2633 0.7308 42 1 3.2167 0.9189 1.7428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687214183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:50 Heat of formation + Delta-G solvation = -20.368962 kcal Electronic energy + Delta-G solvation = -20526.984747 eV Core-core repulsion = 17700.768517 eV Total energy + Delta-G solvation = -2826.216231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.21207 -37.00072 -35.64884 -32.04045 -31.87355 -31.39931 -27.06875 -25.91245 -25.67143 -25.15986 -22.38260 -21.04926 -20.63302 -19.15316 -18.62245 -16.17701 -15.84479 -15.55885 -14.98177 -14.60997 -14.31701 -14.02439 -13.79157 -13.46419 -12.94682 -12.60806 -12.49762 -12.25349 -11.72887 -11.53024 -11.35251 -11.14876 -11.03642 -10.93109 -10.83585 -10.78587 -10.38307 -10.26183 -10.15415 -10.01636 -9.63984 -9.29611 -9.03362 -8.57220 -8.39686 -7.92708 -7.21648 -5.97994 -4.01284 3.28183 3.37328 3.40971 4.18853 4.43274 4.71515 5.10527 5.16563 5.27530 5.31488 5.49337 5.57170 5.59304 5.67486 5.74978 5.84789 5.88125 5.94541 6.03726 6.08545 6.16722 6.29294 6.35488 6.38863 6.47408 6.58228 6.67336 6.74742 6.76913 6.93554 7.05486 7.11479 7.19201 7.28746 7.59315 7.65119 7.72480 7.93524 8.17933 8.23982 8.58643 9.00119 9.61094 11.09918 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.008196 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.261814 B = 3415.551159 C = 3842.892040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.092 3.908 4 H 0.054 0.946 5 C -0.142 4.142 6 C -0.101 4.101 7 C 0.078 3.922 8 H 0.026 0.974 9 C -0.144 4.144 10 N -0.513 5.513 11 C 0.098 3.902 12 C 0.058 3.942 13 C -0.483 4.483 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.883 3.117 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.185 4.185 22 C -0.183 4.183 23 C 0.064 3.936 24 H 0.035 0.965 25 H 0.030 0.970 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.258 0.742 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 1.001 -9.220 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.272 6.272 3 C 0.033 3.967 4 H 0.072 0.928 5 C -0.180 4.180 6 C -0.139 4.139 7 C -0.030 4.030 8 H 0.044 0.956 9 C -0.201 4.201 10 N -0.238 5.238 11 C -0.029 4.029 12 C 0.057 3.943 13 C -0.521 4.521 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.711 3.289 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.224 4.224 22 C -0.220 4.220 23 C -0.064 4.064 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.172 0.536 -9.261 12.363 hybrid contribution 0.121 1.645 0.934 1.896 sum -8.050 2.182 -8.327 11.786 Atomic orbital electron populations 1.22728 0.83214 1.02004 0.98926 1.88147 1.17347 1.27001 1.94709 1.22275 0.95332 0.84511 0.94543 0.92839 1.22073 0.99448 0.99221 0.97216 1.21468 0.95012 1.00476 0.96925 1.21552 0.94557 0.96050 0.90878 0.95577 1.21882 0.99185 1.00281 0.98768 1.61919 1.15104 1.46767 1.00041 1.21729 0.87845 1.00255 0.93049 1.18720 0.97372 0.85053 0.93163 1.20589 0.99344 1.22823 1.09373 0.92380 1.24971 0.95305 0.96356 0.96777 1.69982 1.03275 1.40341 1.38274 0.86685 0.78623 0.80085 0.83549 1.19712 1.21073 1.21174 1.22770 0.92469 1.07624 0.99507 1.22635 0.94320 1.05581 0.99492 1.22202 0.89837 0.94399 0.99958 0.94682 0.95132 0.90243 0.92548 0.91875 0.90684 0.92845 0.93315 0.92355 0.91898 0.93218 0.93278 0.93227 0.92312 0.90928 0.91496 0.90883 0.94918 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.46 16 2 O -0.35 -6.06 9.68 -35.23 -0.34 -6.40 16 3 C 0.09 1.49 2.94 -26.65 -0.08 1.41 16 4 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 5 C -0.14 -2.00 5.70 -26.61 -0.15 -2.15 16 6 C -0.10 -1.49 5.22 -26.65 -0.14 -1.63 16 7 C 0.08 1.34 2.44 -67.72 -0.17 1.18 16 8 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 9 C -0.14 -2.26 8.61 37.16 0.32 -1.94 16 10 N -0.51 -10.30 4.11 -226.69 -0.93 -11.23 16 11 C 0.10 2.26 4.61 -3.82 -0.02 2.24 16 12 C 0.06 1.43 1.15 -155.65 -0.18 1.25 16 13 C -0.48 -12.96 7.04 -34.44 -0.24 -13.21 16 14 H 0.06 1.58 7.76 -52.49 -0.41 1.18 16 15 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 16 N -0.88 -24.73 12.32 55.43 0.68 -24.04 16 17 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.19 -4.46 9.88 -26.73 -0.26 -4.72 16 22 C -0.18 -4.21 9.72 -26.73 -0.26 -4.47 16 23 C 0.06 1.27 4.90 -3.83 -0.02 1.25 16 24 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.03 0.34 7.84 -51.93 -0.41 -0.07 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.20 7.80 -51.93 -0.40 0.79 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.97 6.37 -51.93 -0.33 0.64 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 1.12 5.27 -51.93 -0.27 0.85 16 35 H 0.05 1.28 6.98 -51.93 -0.36 0.91 16 36 H 0.26 6.95 8.32 -40.82 -0.34 6.62 16 37 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 38 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.11 2.41 5.89 -51.93 -0.31 2.11 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -28.14 324.66 -8.42 -36.55 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.50 Total: 1.87 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.20 Total: -17.57 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.25 Total: -35.28 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.34 Total: -6.40 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.14 -8.42 -36.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687214183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.185 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds