Wall clock time and date at job start Mon Mar 30 2020 07:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00259 * 2 1 4 4 H 1.09005 * 109.50147 * 30.00668 * 3 2 1 5 5 C 1.53117 * 109.50696 * 269.92510 * 3 2 1 6 6 C 1.53120 * 109.16082 * 297.67340 * 5 3 2 7 7 C 1.53037 * 109.27952 * 302.34513 * 6 5 3 8 8 H 1.08997 * 109.46184 * 299.16642 * 7 6 5 9 9 C 1.52995 * 109.46385 * 179.18535 * 7 6 5 10 10 N 1.46849 * 109.52358 * 59.17624 * 7 6 5 11 11 C 1.46896 * 110.99982 * 174.16019 * 10 7 6 12 12 C 1.53006 * 109.47222 * 195.61969 * 11 10 7 13 13 C 1.50700 * 115.55255 * 268.85674 * 12 11 10 14 14 H 1.07999 * 119.99980 * 115.06752 * 13 12 11 15 15 C 1.37870 * 119.99944 * 295.06568 * 13 12 11 16 16 N 1.31526 * 119.99920 * 359.33817 * 15 13 12 17 17 Si 1.86793 * 120.00306 * 179.34088 * 15 13 12 18 18 H 1.48505 * 109.46946 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47598 * 119.99766 * 17 15 13 20 20 H 1.48500 * 109.47141 * 239.99929 * 17 15 13 21 21 C 1.53002 * 117.49712 * 123.14243 * 12 11 10 22 22 C 1.52997 * 60.00272 * 252.51644 * 21 12 11 23 23 C 1.46847 * 111.20194 * 298.26206 * 10 7 6 24 24 H 1.09002 * 109.46794 * 299.99888 * 1 2 3 25 25 H 1.09000 * 109.47048 * 59.99335 * 1 2 3 26 26 H 1.08991 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.52482 * 57.57882 * 5 3 2 28 28 H 1.09001 * 109.52321 * 177.76761 * 5 3 2 29 29 H 1.08999 * 109.50220 * 62.28443 * 6 5 3 30 30 H 1.09003 * 109.50530 * 182.40604 * 6 5 3 31 31 H 1.08998 * 109.47207 * 53.78177 * 9 7 6 32 32 H 1.09006 * 109.47268 * 173.78124 * 9 7 6 33 33 H 1.09001 * 109.47012 * 293.78016 * 9 7 6 34 34 H 1.08994 * 109.47350 * 315.62072 * 11 10 7 35 35 H 1.08996 * 109.47011 * 75.62563 * 11 10 7 36 36 H 0.96996 * 119.99964 * 185.01999 * 16 15 13 37 37 H 1.09003 * 117.49790 * 0.02562 * 21 12 11 38 38 H 1.08997 * 117.49613 * 145.02292 * 21 12 11 39 39 H 1.09006 * 117.49788 * 252.51502 * 22 21 12 40 40 H 1.08994 * 117.52072 * 107.47978 * 22 21 12 41 41 H 1.09000 * 109.45990 * 301.72591 * 23 10 7 42 42 H 1.08998 * 109.46304 * 181.75717 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3455 1.9998 0.5139 5 6 2.2200 1.7717 -1.4433 6 6 3.2017 0.8252 -2.1396 7 6 4.5175 0.7979 -1.3587 8 1 4.9478 1.7991 -1.3371 9 6 5.4947 -0.1624 -2.0396 10 7 4.2637 0.3449 0.0149 11 6 5.5218 0.1739 0.7538 12 6 5.2639 -0.6520 2.0157 13 6 4.9276 0.1397 3.2532 14 1 3.9523 0.0439 3.7071 15 6 5.8651 0.9862 3.8059 16 7 7.0573 1.0929 3.2607 17 14 5.4422 1.9814 5.3290 18 1 4.0476 1.6836 5.7434 19 1 6.3731 1.6227 6.4290 20 1 5.5694 3.4294 5.0253 21 6 6.0745 -1.9369 2.1970 22 6 4.5881 -2.0138 1.8429 23 6 3.3607 1.2643 0.7190 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.2667 1.7610 -1.9717 28 1 2.6265 2.7831 -1.4439 29 1 2.7777 -0.1784 -2.1733 30 1 3.3881 1.1764 -3.1545 31 1 5.5987 0.1094 -3.0901 32 1 6.4666 -0.0994 -1.5501 33 1 5.1150 -1.1813 -1.9638 34 1 6.2460 -0.3422 0.1236 35 1 5.9147 1.1513 1.0333 36 1 7.7403 1.6316 3.6898 37 1 6.7918 -2.1936 1.4175 38 1 6.3649 -2.2097 3.2116 39 1 3.9005 -2.3372 2.6245 40 1 4.3268 -2.3210 0.8303 41 1 3.7964 2.2633 0.7308 42 1 3.2167 0.9189 1.7428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687214183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:50 Heat of formation + Delta-G solvation = -36.686596 kcal Electronic energy + Delta-G solvation = -20527.692333 eV Core-core repulsion = 17700.768517 eV Total energy + Delta-G solvation = -2826.923816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61617 -38.56415 -37.22919 -34.02968 -33.35615 -32.75563 -28.38121 -27.72686 -27.07144 -26.69926 -23.88397 -22.85857 -22.09109 -20.75761 -20.29260 -18.06263 -17.12777 -17.00250 -16.63410 -16.16627 -15.80034 -15.65482 -15.24370 -15.02011 -14.25893 -14.14483 -13.94399 -13.76550 -13.26762 -13.07623 -12.86277 -12.85119 -12.73290 -12.51681 -12.34770 -12.27468 -12.05447 -11.92066 -11.58900 -11.51777 -11.23532 -11.00118 -10.56566 -10.42578 -10.23600 -9.85798 -8.86425 -8.06527 -6.14741 1.37206 1.40846 1.50765 2.43094 2.97234 3.17969 3.21766 3.78688 3.90892 3.95964 4.11134 4.23523 4.36116 4.46069 4.52704 4.62866 4.64114 4.67855 4.73607 4.77700 4.81857 4.85582 4.94189 4.98065 5.06133 5.07444 5.10725 5.12931 5.18593 5.28906 5.34352 5.35701 5.45309 5.57253 5.70001 5.71672 5.90760 6.38641 6.50968 6.55424 6.69149 6.92571 7.49439 9.00845 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.008196 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.261814 B = 3415.551159 C = 3842.892040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.384 6.384 3 C 0.096 3.904 4 H 0.068 0.932 5 C -0.137 4.137 6 C -0.094 4.094 7 C 0.072 3.928 8 H 0.018 0.982 9 C -0.138 4.138 10 N -0.514 5.514 11 C 0.115 3.885 12 C 0.037 3.963 13 C -0.491 4.491 14 H 0.046 0.954 15 C 0.025 3.975 16 N -0.908 5.908 17 Si 0.941 3.059 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.189 4.189 22 C -0.161 4.161 23 C 0.065 3.935 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.012 0.988 36 H 0.258 0.742 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 1.350 -10.691 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.303 6.303 3 C 0.038 3.962 4 H 0.086 0.914 5 C -0.174 4.174 6 C -0.131 4.131 7 C -0.037 4.037 8 H 0.036 0.964 9 C -0.196 4.196 10 N -0.239 5.239 11 C -0.013 4.013 12 C 0.037 3.963 13 C -0.529 4.529 14 H 0.064 0.936 15 C -0.174 4.174 16 N -0.546 5.546 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.227 4.227 22 C -0.198 4.198 23 C -0.064 4.064 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.039 0.961 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.726 0.880 -10.738 14.514 hybrid contribution 0.566 1.506 1.384 2.122 sum -9.160 2.386 -9.354 13.308 Atomic orbital electron populations 1.22914 0.80984 1.03157 1.00184 1.88084 1.19836 1.27377 1.94979 1.22184 0.93316 0.84872 0.95877 0.91408 1.22050 1.00619 0.99204 0.95563 1.21428 0.93367 1.00383 0.97944 1.21752 0.96650 0.95853 0.89428 0.96359 1.21837 0.97751 0.99658 1.00317 1.61923 1.13392 1.47362 1.01201 1.21393 0.89295 0.97839 0.92736 1.18842 0.98412 0.85671 0.93414 1.20730 0.98789 1.23242 1.10119 0.93586 1.25586 0.95221 0.97261 0.99375 1.70087 1.03985 1.41156 1.39402 0.85770 0.78435 0.78699 0.80386 1.19284 1.20827 1.20837 1.22736 0.93398 1.07482 0.99072 1.22538 0.93441 1.04012 0.99840 1.22098 0.92092 0.93289 0.98880 0.94231 0.92969 0.89256 0.89947 0.91136 0.91569 0.89955 0.90202 0.94041 0.92404 0.93100 0.97004 0.93307 0.91268 0.92357 0.91706 0.89840 0.96137 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.82 113.37 1.23 1.78 16 2 O -0.38 -12.49 9.68 -148.98 -1.44 -13.93 16 3 C 0.10 2.96 2.94 30.65 0.09 3.05 16 4 H 0.07 1.87 7.79 -2.38 -0.02 1.85 16 5 C -0.14 -3.43 5.70 30.67 0.17 -3.25 16 6 C -0.09 -2.49 5.22 30.65 0.16 -2.33 16 7 C 0.07 2.36 2.44 44.94 0.11 2.47 16 8 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 9 C -0.14 -4.14 8.61 71.98 0.62 -3.52 16 10 N -0.51 -20.67 4.11 -871.13 -3.58 -24.25 16 11 C 0.11 5.43 4.61 86.31 0.40 5.83 16 12 C 0.04 1.89 1.15 -52.92 -0.06 1.83 16 13 C -0.49 -27.01 7.04 25.60 0.18 -26.83 16 14 H 0.05 2.58 7.76 -2.91 -0.02 2.56 16 15 C 0.03 1.39 5.28 84.65 0.45 1.83 16 16 N -0.91 -52.14 12.32 21.45 0.26 -51.88 16 17 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 C -0.19 -9.17 9.88 30.59 0.30 -8.87 16 22 C -0.16 -7.41 9.72 30.60 0.30 -7.11 16 23 C 0.06 2.59 4.90 86.33 0.42 3.01 16 24 H 0.04 0.86 8.09 -2.39 -0.02 0.85 16 25 H 0.05 0.98 7.84 -2.39 -0.02 0.96 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.69 7.84 -2.39 -0.02 1.67 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.91 7.80 -2.39 -0.02 1.90 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.36 6.37 -2.38 -0.02 1.35 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 2.35 5.27 -2.39 -0.01 2.33 16 35 H 0.01 0.64 6.98 -2.39 -0.02 0.62 16 36 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 37 H 0.07 3.17 8.03 -2.39 -0.02 3.15 16 38 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 40 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 3.31 5.89 -2.39 -0.01 3.30 16 Total: -1.00 -61.15 324.66 2.60 -58.55 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.96 Total: 17.84 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 4.37 Total: -32.10 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -3.31 Total: -76.13 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.44 Total: -13.93 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -61.15 2.60 -58.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687214183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.865 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds