Wall clock time and date at job start Mon Mar 30 2020 07:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99967 * 2 1 4 4 H 1.09001 * 109.53295 * 33.25440 * 3 2 1 5 5 C 1.53120 * 109.50199 * 273.15881 * 3 2 1 6 6 C 1.53117 * 109.21028 * 182.43377 * 5 3 2 7 7 C 1.53041 * 109.27821 * 57.62728 * 6 5 3 8 8 H 1.08993 * 109.46273 * 60.83394 * 7 6 5 9 9 C 1.53000 * 109.45858 * 180.81364 * 7 6 5 10 10 N 1.46845 * 109.51871 * 300.81378 * 7 6 5 11 11 C 1.46903 * 110.99634 * 185.83890 * 10 7 6 12 12 C 1.53004 * 109.47004 * 187.24368 * 11 10 7 13 13 C 1.50700 * 115.55134 * 282.14892 * 12 11 10 14 14 H 1.07999 * 119.99525 * 114.48018 * 13 12 11 15 15 C 1.37869 * 120.00001 * 294.47976 * 13 12 11 16 16 N 1.31517 * 119.99991 * 163.88150 * 15 13 12 17 17 Si 1.86797 * 120.00211 * 343.88707 * 15 13 12 18 18 H 1.48497 * 109.47512 * 84.26122 * 17 15 13 19 19 H 1.48500 * 109.47130 * 204.26249 * 17 15 13 20 20 H 1.48497 * 109.47164 * 324.25546 * 17 15 13 21 21 C 1.52999 * 117.49527 * 136.43948 * 12 11 10 22 22 C 1.52997 * 60.00142 * 252.51030 * 21 12 11 23 23 C 1.46853 * 111.19709 * 61.74873 * 10 7 6 24 24 H 1.08997 * 109.47168 * 299.99957 * 1 2 3 25 25 H 1.09000 * 109.47150 * 60.00225 * 1 2 3 26 26 H 1.09002 * 109.46967 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.52235 * 62.49763 * 5 3 2 28 28 H 1.08996 * 109.52386 * 302.37143 * 5 3 2 29 29 H 1.09003 * 109.50133 * 177.56218 * 6 5 3 30 30 H 1.08999 * 109.50872 * 297.68232 * 6 5 3 31 31 H 1.08994 * 109.47204 * 60.00001 * 9 7 6 32 32 H 1.09005 * 109.46484 * 179.97438 * 9 7 6 33 33 H 1.08997 * 109.47530 * 299.99403 * 9 7 6 34 34 H 1.08998 * 109.47286 * 307.24928 * 11 10 7 35 35 H 1.08998 * 109.46976 * 67.25157 * 11 10 7 36 36 H 0.96997 * 120.00066 * 185.01100 * 16 15 13 37 37 H 1.08996 * 117.50023 * 0.02562 * 21 12 11 38 38 H 1.09006 * 117.49737 * 145.02520 * 21 12 11 39 39 H 1.08993 * 117.50485 * 252.51097 * 22 21 12 40 40 H 1.09003 * 117.49452 * 107.48707 * 22 21 12 41 41 H 1.09000 * 109.46574 * 58.26796 * 23 10 7 42 42 H 1.08996 * 109.45819 * 178.23959 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3736 1.9879 0.5633 5 6 2.1454 1.8048 -1.4412 6 6 2.8241 3.1774 -1.4372 7 6 4.1863 3.0655 -0.7487 8 1 4.8139 2.3632 -1.2972 9 6 4.8594 4.4393 -0.7244 10 7 4.0028 2.5865 0.6272 11 6 5.2743 2.5985 1.3628 12 6 5.0821 1.9279 2.7245 13 6 4.4054 2.7709 3.7745 14 1 3.4343 2.4865 4.1519 15 6 5.0259 3.9051 4.2532 16 7 4.3318 4.8046 4.9156 17 14 6.8526 4.1645 3.9608 18 1 7.0583 4.7709 2.6210 19 1 7.3969 5.0711 5.0034 20 1 7.5547 2.8576 4.0258 21 6 6.1649 0.9526 3.1907 22 6 4.8025 0.4237 2.7380 23 6 3.3958 1.2494 0.6474 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.1566 1.8887 -1.8919 28 1 2.7489 1.1017 -2.0152 29 1 2.9619 3.5181 -2.4634 30 1 2.2008 3.8901 -0.8971 31 1 4.2318 5.1418 -0.1762 32 1 5.8295 4.3598 -0.2336 33 1 4.9966 4.7949 -1.7456 34 1 6.0286 2.0554 0.7934 35 1 5.6004 3.6284 1.5079 36 1 4.7508 5.6356 5.1892 37 1 7.0143 0.7891 2.5276 38 1 6.3880 0.9207 4.2572 39 1 4.1294 0.0438 3.5065 40 1 4.7555 -0.0881 1.7768 41 1 4.0271 0.5555 0.0923 42 1 3.3015 0.9090 1.6785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687214194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:55 Heat of formation + Delta-G solvation = -26.680262 kcal Electronic energy + Delta-G solvation = -20420.994487 eV Core-core repulsion = 17594.504578 eV Total energy + Delta-G solvation = -2826.489909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96020 -38.91419 -37.61675 -34.25683 -33.50081 -32.73756 -28.96603 -28.14512 -27.03066 -26.36424 -24.41353 -23.14193 -22.02917 -20.84303 -20.69341 -18.29237 -17.50305 -17.13832 -16.73017 -16.15769 -15.77014 -15.66903 -15.40798 -14.97961 -14.72543 -14.46066 -14.29766 -14.07217 -13.54910 -13.21368 -12.97028 -12.95301 -12.83026 -12.56457 -12.44066 -12.14127 -12.07649 -11.80252 -11.77877 -11.63100 -11.41427 -11.16813 -10.87131 -10.52266 -10.26913 -10.13747 -9.01021 -8.21476 -6.20367 1.35408 1.41953 1.53753 2.41925 2.53211 2.99331 3.20216 3.54999 3.79768 3.90501 3.95399 4.09453 4.15979 4.30906 4.39348 4.42388 4.47696 4.50931 4.55691 4.56169 4.66178 4.68174 4.75985 4.82611 4.86176 4.90443 4.92980 5.02036 5.05697 5.08069 5.11575 5.27158 5.28568 5.45312 5.48579 5.50599 5.79456 6.19748 6.30768 6.41739 6.48785 6.80091 7.42196 8.93356 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021954 B = 0.007944 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.060123 B = 3523.752546 C = 3989.828139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.093 3.907 4 H 0.051 0.949 5 C -0.132 4.132 6 C -0.102 4.102 7 C 0.073 3.927 8 H 0.042 0.958 9 C -0.145 4.145 10 N -0.532 5.532 11 C 0.103 3.897 12 C -0.019 4.019 13 C -0.470 4.470 14 H 0.023 0.977 15 C 0.028 3.972 16 N -0.945 5.945 17 Si 0.924 3.076 18 H -0.264 1.264 19 H -0.299 1.299 20 H -0.232 1.232 21 C -0.191 4.191 22 C -0.170 4.170 23 C 0.054 3.946 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.059 0.941 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -6.118 -15.337 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C 0.035 3.965 4 H 0.069 0.931 5 C -0.170 4.170 6 C -0.140 4.140 7 C -0.035 4.035 8 H 0.060 0.940 9 C -0.202 4.202 10 N -0.258 5.258 11 C -0.024 4.024 12 C -0.020 4.020 13 C -0.508 4.508 14 H 0.042 0.958 15 C -0.170 4.170 16 N -0.585 5.585 17 Si 0.749 3.251 18 H -0.190 1.190 19 H -0.226 1.226 20 H -0.154 1.154 21 C -0.229 4.229 22 C -0.207 4.207 23 C -0.074 4.074 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.050 0.950 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.809 -5.835 -14.959 16.159 hybrid contribution 0.819 0.224 0.315 0.905 sum -0.991 -5.611 -14.644 15.714 Atomic orbital electron populations 1.22939 0.79710 1.03773 1.00473 1.87800 1.21294 1.28025 1.95251 1.22068 0.94356 0.83825 0.96268 0.93067 1.22022 1.01846 0.97211 0.95897 1.21557 0.94694 0.96701 1.01022 1.21814 0.97139 0.96484 0.88017 0.94005 1.21876 0.99735 0.96074 1.02519 1.61607 1.25499 1.24679 1.13985 1.21702 0.88912 0.99480 0.92326 1.19355 0.99835 0.88930 0.93873 1.20206 1.02348 1.08226 1.19970 0.95832 1.25650 1.02082 0.95006 0.94263 1.70071 1.38432 1.07926 1.42087 0.86115 0.81610 0.79656 0.77766 1.18963 1.22595 1.15439 1.23226 0.92372 1.06716 1.00611 1.22992 0.98672 0.97319 1.01707 1.22444 0.93613 0.89443 1.01852 0.94482 0.92736 0.88001 0.90274 0.91227 0.88588 0.92076 0.93306 0.93821 0.89550 0.95552 0.92263 0.92775 0.88865 0.90583 0.90613 0.88147 0.94973 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.81 113.37 1.23 1.83 16 2 O -0.40 -12.17 10.36 -148.98 -1.54 -13.71 16 3 C 0.09 2.91 2.77 30.65 0.08 2.99 16 4 H 0.05 1.77 7.83 -2.39 -0.02 1.75 16 5 C -0.13 -3.27 5.55 30.67 0.17 -3.10 16 6 C -0.10 -2.55 5.38 30.65 0.16 -2.39 16 7 C 0.07 2.21 2.42 44.94 0.11 2.32 16 8 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 9 C -0.14 -4.23 8.77 71.98 0.63 -3.59 16 10 N -0.53 -20.34 4.62 -871.08 -4.03 -24.37 16 11 C 0.10 4.29 3.97 86.30 0.34 4.63 16 12 C -0.02 -0.86 0.55 -52.93 -0.03 -0.89 16 13 C -0.47 -26.96 9.33 25.60 0.24 -26.72 16 14 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 15 C 0.03 1.61 5.39 84.65 0.46 2.06 16 16 N -0.95 -59.60 13.95 21.44 0.30 -59.30 16 17 Si 0.92 44.03 25.61 68.60 1.76 45.78 16 18 H -0.26 -11.96 6.74 99.48 0.67 -11.29 16 19 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 20 H -0.23 -10.09 5.82 99.48 0.58 -9.51 16 21 C -0.19 -7.78 7.72 30.59 0.24 -7.55 16 22 C -0.17 -6.81 7.15 30.59 0.22 -6.59 16 23 C 0.05 1.94 3.55 86.33 0.31 2.25 16 24 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 25 H 0.05 1.01 7.68 -2.39 -0.02 1.00 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.66 7.70 -2.39 -0.02 1.64 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.37 6.48 -2.38 -0.02 1.36 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.03 0.99 7.94 -2.39 -0.02 0.97 16 35 H 0.06 2.68 4.49 -2.39 -0.01 2.67 16 36 H 0.26 15.64 8.32 -92.71 -0.77 14.86 16 37 H 0.09 3.30 8.10 -2.39 -0.02 3.28 16 38 H 0.08 3.24 8.01 -2.38 -0.02 3.22 16 39 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.10 3.57 5.98 -2.39 -0.01 3.56 16 41 H 0.03 1.10 7.49 -2.39 -0.02 1.08 16 42 H 0.09 3.65 4.37 -2.39 -0.01 3.64 16 Total: -1.00 -66.20 313.25 1.45 -64.75 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.81 Total: 21.60 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 4.16 Total: -34.74 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -3.73 Total: -83.67 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.54 Total: -13.71 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.76 Total: 45.78 kcal Total: -66.20 1.45 -64.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687214194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.070 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds