Wall clock time and date at job start Mon Mar 30 2020 07:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 108.68572 * 2 1 4 4 C 1.50727 * 108.80292 * 241.66335 * 2 1 3 5 5 C 1.54388 * 109.13194 * 147.60235 * 4 2 1 6 6 N 1.40471 * 111.44756 * 75.43353 * 5 4 2 7 7 C 1.46895 * 111.00000 * 172.17447 * 6 5 4 8 8 C 1.53002 * 109.47496 * 71.62872 * 7 6 5 9 9 C 1.50691 * 115.56089 * 78.94128 * 8 7 6 10 10 H 1.08006 * 120.00328 * 268.84047 * 9 8 7 11 11 C 1.37879 * 120.00012 * 88.84059 * 9 8 7 12 12 N 1.31523 * 120.00015 * 184.67897 * 11 9 8 13 13 Si 1.86796 * 119.99827 * 4.68153 * 11 9 8 14 14 H 1.48504 * 109.47224 * 94.79358 * 13 11 9 15 15 H 1.48506 * 109.47170 * 214.79127 * 13 11 9 16 16 H 1.48496 * 109.47447 * 334.79225 * 13 11 9 17 17 C 1.53006 * 117.49551 * 293.25723 * 8 7 6 18 18 C 1.53000 * 117.49857 * 224.63224 * 8 7 6 19 19 C 1.47602 * 114.42475 * 298.75155 * 6 5 4 20 20 C 1.50730 * 108.45489 * 80.43497 * 19 6 5 21 21 H 1.09005 * 108.94003 * 27.20030 * 20 19 6 22 22 C 1.53006 * 109.00246 * 146.00517 * 20 19 6 23 23 O 1.43932 * 111.88577 * 266.62609 * 20 19 6 24 24 H 1.08996 * 109.47363 * 178.33697 * 1 2 3 25 25 H 1.09005 * 109.46493 * 298.33614 * 1 2 3 26 26 H 1.08999 * 109.47430 * 58.33421 * 1 2 3 27 27 H 1.08998 * 109.52543 * 27.71217 * 4 2 1 28 28 H 1.08993 * 109.58515 * 267.53570 * 4 2 1 29 29 H 1.08997 * 109.08933 * 314.93259 * 5 4 2 30 30 H 1.08997 * 109.08590 * 195.93724 * 5 4 2 31 31 H 1.09004 * 109.47269 * 311.62964 * 7 6 5 32 32 H 1.09000 * 109.47580 * 191.62947 * 7 6 5 33 33 H 0.97003 * 119.99537 * 174.99647 * 12 11 9 34 34 H 1.08997 * 117.49808 * 145.02467 * 17 8 7 35 35 H 1.08996 * 117.49959 * 359.97438 * 17 8 7 36 36 H 1.08997 * 117.50334 * 0.02562 * 18 8 7 37 37 H 1.09000 * 117.51957 * 214.96748 * 18 8 7 38 38 H 1.09008 * 109.63581 * 200.12051 * 19 6 5 39 39 H 1.09000 * 109.64172 * 320.74509 * 19 6 5 40 40 H 1.08995 * 109.47737 * 182.37446 * 22 20 19 41 41 H 1.08999 * 109.46514 * 302.37620 * 22 20 19 42 42 H 1.09002 * 109.46937 * 62.37222 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8793 1.0326 0.0000 4 6 2.0158 -0.6772 -1.2559 5 6 3.3448 -0.0283 -1.6990 6 7 4.4147 -0.4448 -0.8897 7 6 5.6971 0.0276 -1.4283 8 6 5.8117 1.5392 -1.2212 9 6 6.2000 1.9776 0.1672 10 1 5.4357 2.1882 0.9006 11 6 7.5311 2.1100 0.5013 12 7 7.8730 2.4029 1.7371 13 14 8.8490 1.8735 -0.8013 14 1 9.2225 3.1923 -1.3728 15 1 10.0452 1.2436 -0.1866 16 1 8.3270 0.9965 -1.8800 17 6 4.8457 2.4341 -2.0005 18 6 6.3229 2.3763 -2.3954 19 6 4.2764 -0.0884 0.5359 20 6 3.3640 -1.0926 1.1924 21 1 3.4271 -2.0359 0.6497 22 6 3.8246 -1.3163 2.6343 23 8 1.9950 -0.6482 1.2015 24 1 -0.3634 -1.0272 -0.0298 25 1 -0.3632 0.4878 0.9046 26 1 -0.3634 0.5395 -0.8746 27 1 1.2723 -0.5596 -2.0441 28 1 2.1754 -1.7376 -1.0608 29 1 3.2508 1.0557 -1.6353 30 1 3.5503 -0.3070 -2.7325 31 1 5.7491 -0.1982 -2.4935 32 1 6.5153 -0.4731 -0.9105 33 1 8.8095 2.4247 1.9889 34 1 4.4914 3.3401 -1.5089 35 1 4.1291 1.9460 -2.6609 36 1 6.5773 1.8504 -3.3156 37 1 6.9400 3.2445 -2.1640 38 1 5.2546 -0.1133 1.0163 39 1 3.8468 0.9095 0.6241 40 1 3.1956 -2.0728 3.1035 41 1 4.8611 -1.6534 2.6363 42 1 3.7452 -0.3821 3.1901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694926906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:10 Heat of formation + Delta-G solvation = -10.016231 kcal Electronic energy + Delta-G solvation = -20690.491681 eV Core-core repulsion = 17864.724378 eV Total energy + Delta-G solvation = -2825.767303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 10.26 seconds Orbital eigenvalues (eV) -39.80665 -37.46243 -34.72338 -33.89274 -32.12897 -30.31862 -28.97439 -26.45272 -26.06767 -24.19153 -22.19792 -22.00493 -20.38879 -19.56271 -18.87944 -16.92160 -16.41706 -15.36989 -15.15608 -14.96363 -14.55323 -13.73516 -13.47063 -13.18589 -12.98935 -12.74034 -12.57727 -12.40363 -12.31129 -11.98248 -11.62753 -11.27918 -11.23528 -11.08373 -10.81820 -10.72787 -10.54671 -10.49778 -10.26585 -10.19970 -10.02813 -9.56928 -9.02225 -8.91477 -8.66121 -8.54159 -7.39540 -6.12749 -4.15274 3.26800 3.37620 3.43509 4.01124 4.40144 4.50911 4.90565 5.01761 5.13503 5.17158 5.34208 5.57038 5.60458 5.68261 5.72202 5.77551 5.82323 5.87373 5.95368 6.01836 6.04918 6.14707 6.18997 6.22790 6.27157 6.30981 6.33692 6.40191 6.54660 6.58080 6.61362 6.68941 6.78463 6.98923 7.03523 7.13919 7.62223 7.71530 7.80554 8.10810 8.45767 8.86974 9.49041 10.97276 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025469 B = 0.008062 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.131584 B = 3472.065772 C = 4047.649970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.055 0.945 4 C -0.148 4.148 5 C 0.055 3.945 6 N -0.547 5.547 7 C 0.097 3.903 8 C -0.025 4.025 9 C -0.487 4.487 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.897 5.897 13 Si 0.880 3.120 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.255 1.255 17 C -0.191 4.191 18 C -0.199 4.199 19 C 0.047 3.953 20 C 0.088 3.912 21 H 0.062 0.938 22 C -0.142 4.142 23 O -0.394 6.394 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 -6.129 -5.232 12.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.073 0.927 4 C -0.186 4.186 5 C -0.075 4.075 6 N -0.270 5.270 7 C -0.030 4.030 8 C -0.027 4.027 9 C -0.524 4.524 10 H 0.097 0.903 11 C -0.125 4.125 12 N -0.534 5.534 13 Si 0.708 3.292 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.179 1.179 17 C -0.228 4.228 18 C -0.237 4.237 19 C -0.080 4.080 20 C 0.030 3.970 21 H 0.080 0.920 22 C -0.200 4.200 23 O -0.315 6.315 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.474 -6.546 -4.981 12.546 hybrid contribution 1.042 0.981 -0.929 1.706 sum -8.432 -5.565 -5.910 11.704 Atomic orbital electron populations 1.21867 0.94285 1.02152 1.01930 1.21777 0.93998 0.96011 0.85093 0.92662 1.22145 0.97373 1.01569 0.97506 1.21434 0.90741 0.98627 0.96650 1.59543 1.02540 1.62028 1.02849 1.21891 0.90299 0.93623 0.97197 1.20238 0.99065 0.90557 0.92848 1.20320 0.92886 1.45647 0.93540 0.90333 1.24976 0.98473 0.93852 0.95174 1.69883 1.17652 1.48350 1.17486 0.86843 0.80981 0.78760 0.82635 1.20977 1.22332 1.17907 1.23057 0.91749 1.03215 1.04794 1.22927 0.97073 1.04076 0.99665 1.22485 1.01572 0.96549 0.87348 1.22060 0.80912 0.97381 0.96609 0.92004 1.21803 1.00854 1.02139 0.95192 1.88176 1.28067 1.78626 1.36621 0.92361 0.92221 0.91625 0.90869 0.90578 0.93603 0.92049 0.93387 0.90798 0.92558 0.89989 0.90410 0.91050 0.89898 0.87533 0.92849 0.92820 0.90978 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.28 37.16 0.34 -1.41 16 2 C 0.09 1.34 2.78 -27.87 -0.08 1.26 16 3 H 0.06 0.93 6.61 -51.93 -0.34 0.58 16 4 C -0.15 -2.08 5.16 -27.14 -0.14 -2.22 16 5 C 0.06 0.89 3.89 -6.43 -0.03 0.86 16 6 N -0.55 -9.98 4.21 -239.61 -1.01 -10.99 16 7 C 0.10 1.94 5.04 -3.83 -0.02 1.92 16 8 C -0.02 -0.54 0.53 -155.66 -0.08 -0.63 16 9 C -0.49 -12.68 7.08 -34.44 -0.24 -12.92 16 10 H 0.08 2.26 6.94 -52.48 -0.36 1.90 16 11 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -26.23 13.95 55.43 0.77 -25.45 16 13 Si 0.88 21.12 25.18 -169.99 -4.28 16.84 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 16 H -0.26 -5.77 6.06 56.52 0.34 -5.42 16 17 C -0.19 -3.78 8.21 -26.72 -0.22 -4.00 16 18 C -0.20 -4.16 7.04 -26.73 -0.19 -4.35 16 19 C 0.05 0.92 3.06 -4.58 -0.01 0.90 16 20 C 0.09 1.50 2.86 -27.87 -0.08 1.42 16 21 H 0.06 1.05 7.26 -51.93 -0.38 0.68 16 22 C -0.14 -2.24 9.32 37.16 0.35 -1.90 16 23 O -0.39 -6.81 10.16 -35.23 -0.36 -7.16 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 27 H 0.07 0.86 7.70 -51.93 -0.40 0.46 16 28 H 0.08 1.12 7.25 -51.93 -0.38 0.74 16 29 H 0.05 0.80 4.26 -51.93 -0.22 0.58 16 30 H 0.06 0.93 7.83 -51.93 -0.41 0.53 16 31 H 0.05 0.89 7.65 -51.93 -0.40 0.49 16 32 H 0.07 1.57 8.11 -51.93 -0.42 1.15 16 33 H 0.26 7.35 8.32 -40.82 -0.34 7.01 16 34 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.08 1.37 5.90 -51.93 -0.31 1.06 16 36 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 37 H 0.08 1.84 6.70 -51.93 -0.35 1.49 16 38 H 0.11 2.34 6.25 -51.92 -0.32 2.01 16 39 H 0.05 1.15 5.82 -51.93 -0.30 0.85 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -27.80 305.01 -7.93 -35.73 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.15 Total: 5.47 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.50 Total: -19.03 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.23 Total: -36.44 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.36 Total: -7.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.28 Total: 16.84 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.80 -7.93 -35.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694926906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.710 kcal (2) G-P(sol) polarization free energy of solvation -27.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.26 seconds