Wall clock time and date at job start Mon Mar 30 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.53704 * 2 1 4 4 C 1.54886 * 110.48095 * 237.39139 * 2 1 3 5 5 C 1.54889 * 102.74768 * 203.37621 * 4 2 1 6 6 C 1.54262 * 104.19513 * 37.94451 * 5 4 2 7 7 C 1.52999 * 110.03322 * 217.05674 * 6 5 4 8 8 C 1.50699 * 110.03334 * 95.67416 * 6 5 4 9 9 O 1.21290 * 120.00077 * 237.16894 * 8 6 5 10 10 N 1.34778 * 119.99825 * 56.89207 * 8 6 5 11 11 C 1.46500 * 119.99993 * 356.13921 * 10 8 6 12 12 C 1.37100 * 120.00286 * 176.14080 * 10 8 6 13 13 H 1.08005 * 119.99268 * 353.89302 * 12 10 8 14 14 C 1.38949 * 120.00389 * 173.89641 * 12 10 8 15 15 N 1.31409 * 119.99740 * 5.40084 * 14 12 10 16 16 Si 1.86803 * 120.00029 * 185.40834 * 14 12 10 17 17 H 1.48500 * 109.47274 * 59.99420 * 16 14 12 18 18 H 1.48494 * 109.47110 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46887 * 299.99583 * 16 14 12 20 20 C 1.53874 * 106.59802 * 336.39168 * 6 5 4 21 21 C 1.53000 * 110.03473 * 119.28598 * 20 6 5 22 22 C 1.53002 * 110.03302 * 240.71423 * 20 6 5 23 23 H 1.09002 * 109.47005 * 181.16013 * 1 2 3 24 24 H 1.09007 * 109.46910 * 301.14706 * 1 2 3 25 25 H 1.08989 * 109.47579 * 61.15475 * 1 2 3 26 26 H 1.09007 * 110.75774 * 85.06469 * 4 2 1 27 27 H 1.09001 * 110.76292 * 321.69224 * 4 2 1 28 28 H 1.08999 * 110.48973 * 279.26925 * 5 4 2 29 29 H 1.08999 * 110.48870 * 156.62357 * 5 4 2 30 30 H 1.09004 * 109.47284 * 301.52126 * 7 6 5 31 31 H 1.09002 * 109.47313 * 61.52864 * 7 6 5 32 32 H 1.09005 * 109.46849 * 181.52589 * 7 6 5 33 33 H 1.08999 * 109.47308 * 3.07883 * 11 10 8 34 34 H 1.09004 * 109.47296 * 123.08590 * 11 10 8 35 35 H 1.08999 * 109.46877 * 243.08025 * 11 10 8 36 36 H 0.97005 * 119.99334 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.47421 * 63.65073 * 21 20 6 38 38 H 1.09001 * 109.47218 * 183.65790 * 21 20 6 39 39 H 1.09004 * 109.46819 * 303.65904 * 21 20 6 40 40 H 1.09002 * 109.46821 * 59.99481 * 22 20 6 41 41 H 1.08991 * 109.47193 * 180.02562 * 22 20 6 42 42 H 1.09002 * 109.46856 * 300.00422 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 -1.2222 5 6 3.4906 -1.1979 -0.7602 6 6 3.3166 -1.5406 0.7338 7 6 4.5471 -1.0877 1.5222 8 6 3.1129 -3.0241 0.9028 9 8 2.1183 -3.4403 1.4585 10 7 4.0332 -3.8887 0.4316 11 6 5.1890 -3.3913 -0.3188 12 6 3.8879 -5.2336 0.6545 13 1 3.0917 -5.5927 1.2898 14 6 4.7648 -6.1347 0.0631 15 7 5.7958 -5.6944 -0.6227 16 14 4.4782 -7.9718 0.2426 17 1 3.1566 -8.3254 -0.3352 18 1 5.5462 -8.7120 -0.4762 19 1 4.5034 -8.3384 1.6814 20 6 2.0700 -0.7790 1.2171 21 6 1.0140 -1.7663 1.7180 22 6 2.4507 0.1938 2.3350 23 1 -0.3633 -1.0275 0.0208 24 1 -0.3633 0.5316 0.8796 25 1 -0.3634 0.4957 -0.9000 26 1 2.1250 -0.1380 -2.1002 27 1 1.4580 -1.6600 -1.4224 28 1 4.1897 -0.3707 -0.8829 29 1 3.8315 -2.0721 -1.3149 30 1 5.4355 -1.5757 1.1211 31 1 4.6562 -0.0066 1.4361 32 1 4.4264 -1.3584 2.5712 33 1 5.1624 -2.3020 -0.3471 34 1 6.1072 -3.7199 0.1681 35 1 5.1572 -3.7820 -1.3359 36 1 6.4077 -6.3235 -1.0358 37 1 1.3992 -2.3010 2.5862 38 1 0.1115 -1.2226 1.9971 39 1 0.7790 -2.4790 0.9274 40 1 3.1843 0.9080 1.9609 41 1 1.5617 0.7276 2.6705 42 1 2.8776 -0.3616 3.1701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699006438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:56 Heat of formation + Delta-G solvation = 15.878604 kcal Electronic energy + Delta-G solvation = -21069.020554 eV Core-core repulsion = 18244.376136 eV Total energy + Delta-G solvation = -2824.644418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64006 -37.17599 -35.04033 -32.93498 -31.90521 -30.86472 -27.65273 -27.09993 -26.02636 -24.85314 -23.27851 -23.02843 -20.68351 -19.07206 -17.38364 -16.86296 -15.48567 -15.35047 -14.64922 -14.41346 -13.93333 -13.66468 -13.54551 -13.07941 -12.97544 -12.86658 -12.53992 -12.12870 -11.84525 -11.76664 -11.45183 -11.16722 -11.06509 -10.92845 -10.77198 -10.50145 -10.45665 -10.30282 -10.13790 -10.08606 -9.95362 -9.68312 -9.62879 -9.52240 -8.90179 -7.70526 -7.23915 -6.16380 -3.73689 3.20080 3.25544 3.29977 3.95400 4.15467 4.83507 4.92740 4.98516 5.25938 5.27763 5.55392 5.62240 5.71034 5.76665 5.82576 5.85859 5.91376 5.93700 6.06606 6.10298 6.17520 6.28042 6.30317 6.32623 6.41089 6.45764 6.51150 6.60698 6.65466 6.69728 6.78681 6.85023 6.92443 7.14144 7.22018 7.48254 7.58217 7.62619 8.15323 8.57835 9.27839 9.55970 10.11447 10.75589 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.007160 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.285369 B = 3909.419405 C = 4079.375499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.064 4.064 7 C -0.143 4.143 8 C 0.444 3.556 9 O -0.578 6.578 10 N -0.446 5.446 11 C 0.100 3.900 12 C -0.297 4.297 13 H 0.102 0.898 14 C 0.025 3.975 15 N -0.890 5.890 16 Si 0.928 3.072 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.045 4.045 21 C -0.101 4.101 22 C -0.136 4.136 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.264 0.736 37 H 0.070 0.930 38 H -0.002 1.002 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 10.891 -0.351 11.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.067 4.067 7 C -0.200 4.200 8 C 0.233 3.767 9 O -0.465 6.465 10 N -0.164 5.164 11 C -0.043 4.043 12 C -0.425 4.425 13 H 0.119 0.881 14 C -0.176 4.176 15 N -0.532 5.532 16 Si 0.755 3.245 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.046 4.046 21 C -0.157 4.157 22 C -0.193 4.193 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.017 0.983 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.908 10.551 -0.196 10.946 hybrid contribution 0.242 -0.957 -0.076 0.990 sum -2.666 9.594 -0.272 9.961 Atomic orbital electron populations 1.21864 0.95509 1.02273 1.00235 1.22017 0.95269 0.98240 0.94911 0.91554 1.22546 0.96675 0.99601 0.96811 1.22784 0.96870 1.01554 0.94862 1.21109 0.95705 0.94253 0.95630 1.22149 0.97121 1.00479 1.00227 1.19914 0.84461 0.87399 0.84913 1.90682 1.27986 1.79324 1.48483 1.43810 1.19820 1.06109 1.46624 1.22203 0.89717 0.94530 0.97849 1.19739 1.14243 0.80766 1.27782 0.88069 1.25285 0.95462 1.00489 0.96379 1.70179 1.13751 1.34305 1.34932 0.85964 0.77911 0.82140 0.78457 1.20002 1.20997 1.20002 1.21060 0.94611 0.94776 0.94115 1.22367 0.94120 0.95175 1.03999 1.21995 1.00269 0.98550 0.98480 0.91753 0.93174 0.93756 0.92242 0.91457 0.91636 0.89847 0.91684 0.92414 0.92578 0.93894 0.91747 0.91743 0.92521 0.91122 0.98318 0.90543 0.92994 0.93531 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.99 37.16 0.30 -1.64 16 2 C -0.09 -1.26 2.91 -88.96 -0.26 -1.52 16 3 H 0.07 0.88 7.84 -51.93 -0.41 0.48 16 4 C -0.12 -1.83 6.33 -24.74 -0.16 -1.99 16 5 C -0.12 -2.06 4.41 -25.07 -0.11 -2.17 16 6 C -0.06 -1.17 0.61 -154.55 -0.09 -1.27 16 7 C -0.14 -2.37 6.92 37.16 0.26 -2.11 16 8 C 0.44 10.54 6.24 -10.99 -0.07 10.47 16 9 O -0.58 -15.09 10.07 5.55 0.06 -15.03 16 10 N -0.45 -11.37 3.01 -122.19 -0.37 -11.74 16 11 C 0.10 2.28 6.11 59.85 0.37 2.64 16 12 C -0.30 -8.30 9.55 -14.93 -0.14 -8.45 16 13 H 0.10 2.95 7.20 -52.48 -0.38 2.58 16 14 C 0.02 0.66 5.46 -17.47 -0.10 0.57 16 15 N -0.89 -23.58 9.45 55.50 0.52 -23.06 16 16 Si 0.93 21.10 29.56 -169.99 -5.02 16.08 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.05 -0.76 0.86 -153.39 -0.13 -0.89 16 21 C -0.10 -1.94 5.39 37.16 0.20 -1.74 16 22 C -0.14 -1.97 7.20 37.16 0.27 -1.70 16 23 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 24 H 0.05 0.64 7.84 -51.93 -0.41 0.23 16 25 H 0.04 0.53 8.14 -51.94 -0.42 0.11 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 28 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 29 H 0.08 1.56 5.33 -51.93 -0.28 1.28 16 30 H 0.06 1.11 5.52 -51.93 -0.29 0.83 16 31 H 0.06 0.80 6.47 -51.93 -0.34 0.47 16 32 H 0.06 0.97 7.01 -51.93 -0.36 0.60 16 33 H 0.04 0.83 2.90 -51.93 -0.15 0.67 16 34 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 35 H 0.06 1.56 6.99 -51.93 -0.36 1.20 16 36 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.07 1.55 6.41 -51.53 -0.33 1.22 16 38 H 0.00 -0.03 6.65 -51.93 -0.35 -0.37 16 39 H 0.08 1.69 5.76 -52.12 -0.30 1.39 16 40 H 0.05 0.67 6.61 -51.93 -0.34 0.33 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.85 6.86 -51.93 -0.36 0.49 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -28.56 294.87 -6.61 -35.18 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.57 Total: 3.93 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 0.33 Total: -9.80 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.16 Total: -34.79 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.06 Total: -15.03 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.56 -6.61 -35.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699006438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.055 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds