Wall clock time and date at job start Mon Mar 30 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.53704 * 2 1 4 4 C 1.54886 * 110.48095 * 237.39139 * 2 1 3 5 5 C 1.54889 * 102.74768 * 203.37621 * 4 2 1 6 6 C 1.54262 * 104.19513 * 37.94451 * 5 4 2 7 7 C 1.52999 * 110.03322 * 217.05674 * 6 5 4 8 8 C 1.50699 * 110.03334 * 95.67416 * 6 5 4 9 9 O 1.21290 * 120.00077 * 237.16894 * 8 6 5 10 10 N 1.34778 * 119.99825 * 56.89207 * 8 6 5 11 11 C 1.46500 * 119.99993 * 356.13921 * 10 8 6 12 12 C 1.37100 * 120.00286 * 176.14080 * 10 8 6 13 13 H 1.08005 * 119.99268 * 353.89302 * 12 10 8 14 14 C 1.38949 * 120.00389 * 173.89641 * 12 10 8 15 15 N 1.31409 * 119.99740 * 5.40084 * 14 12 10 16 16 Si 1.86803 * 120.00029 * 185.40834 * 14 12 10 17 17 H 1.48500 * 109.47274 * 59.99420 * 16 14 12 18 18 H 1.48494 * 109.47110 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46887 * 299.99583 * 16 14 12 20 20 C 1.53874 * 106.59802 * 336.39168 * 6 5 4 21 21 C 1.53000 * 110.03473 * 119.28598 * 20 6 5 22 22 C 1.53002 * 110.03302 * 240.71423 * 20 6 5 23 23 H 1.09002 * 109.47005 * 181.16013 * 1 2 3 24 24 H 1.09007 * 109.46910 * 301.14706 * 1 2 3 25 25 H 1.08989 * 109.47579 * 61.15475 * 1 2 3 26 26 H 1.09007 * 110.75774 * 85.06469 * 4 2 1 27 27 H 1.09001 * 110.76292 * 321.69224 * 4 2 1 28 28 H 1.08999 * 110.48973 * 279.26925 * 5 4 2 29 29 H 1.08999 * 110.48870 * 156.62357 * 5 4 2 30 30 H 1.09004 * 109.47284 * 301.52126 * 7 6 5 31 31 H 1.09002 * 109.47313 * 61.52864 * 7 6 5 32 32 H 1.09005 * 109.46849 * 181.52589 * 7 6 5 33 33 H 1.08999 * 109.47308 * 3.07883 * 11 10 8 34 34 H 1.09004 * 109.47296 * 123.08590 * 11 10 8 35 35 H 1.08999 * 109.46877 * 243.08025 * 11 10 8 36 36 H 0.97005 * 119.99334 * 180.02562 * 15 14 12 37 37 H 1.08995 * 109.47421 * 63.65073 * 21 20 6 38 38 H 1.09001 * 109.47218 * 183.65790 * 21 20 6 39 39 H 1.09004 * 109.46819 * 303.65904 * 21 20 6 40 40 H 1.09002 * 109.46821 * 59.99481 * 22 20 6 41 41 H 1.08991 * 109.47193 * 180.02562 * 22 20 6 42 42 H 1.09002 * 109.46856 * 300.00422 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0720 -0.7819 -1.2222 5 6 3.4906 -1.1979 -0.7602 6 6 3.3166 -1.5406 0.7338 7 6 4.5471 -1.0877 1.5222 8 6 3.1129 -3.0241 0.9028 9 8 2.1183 -3.4403 1.4585 10 7 4.0332 -3.8887 0.4316 11 6 5.1890 -3.3913 -0.3188 12 6 3.8879 -5.2336 0.6545 13 1 3.0917 -5.5927 1.2898 14 6 4.7648 -6.1347 0.0631 15 7 5.7958 -5.6944 -0.6227 16 14 4.4782 -7.9718 0.2426 17 1 3.1566 -8.3254 -0.3352 18 1 5.5462 -8.7120 -0.4762 19 1 4.5034 -8.3384 1.6814 20 6 2.0700 -0.7790 1.2171 21 6 1.0140 -1.7663 1.7180 22 6 2.4507 0.1938 2.3350 23 1 -0.3633 -1.0275 0.0208 24 1 -0.3633 0.5316 0.8796 25 1 -0.3634 0.4957 -0.9000 26 1 2.1250 -0.1380 -2.1002 27 1 1.4580 -1.6600 -1.4224 28 1 4.1897 -0.3707 -0.8829 29 1 3.8315 -2.0721 -1.3149 30 1 5.4355 -1.5757 1.1211 31 1 4.6562 -0.0066 1.4361 32 1 4.4264 -1.3584 2.5712 33 1 5.1624 -2.3020 -0.3471 34 1 6.1072 -3.7199 0.1681 35 1 5.1572 -3.7820 -1.3359 36 1 6.4077 -6.3235 -1.0358 37 1 1.3992 -2.3010 2.5862 38 1 0.1115 -1.2226 1.9971 39 1 0.7790 -2.4790 0.9274 40 1 3.1843 0.9080 1.9609 41 1 1.5617 0.7276 2.6705 42 1 2.8776 -0.3616 3.1701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699006438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:55 Heat of formation + Delta-G solvation = -0.195988 kcal Electronic energy + Delta-G solvation = -21069.717600 eV Core-core repulsion = 18244.376136 eV Total energy + Delta-G solvation = -2825.341465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18106 -38.86420 -36.96915 -34.54583 -33.29557 -32.57440 -28.93278 -28.72377 -27.69967 -26.71723 -24.62745 -24.43406 -22.23987 -20.63864 -19.07132 -18.66849 -17.31543 -16.82304 -16.25428 -16.11696 -15.65699 -15.20690 -14.98177 -14.59787 -14.45317 -14.20558 -14.01775 -13.62762 -13.59946 -13.21759 -12.83733 -12.82105 -12.62742 -12.48349 -12.33950 -12.15418 -12.03970 -11.88139 -11.59339 -11.51004 -11.27468 -11.16068 -11.04925 -10.99454 -10.80759 -9.70972 -9.11499 -8.18527 -5.85517 1.35390 1.36949 1.47292 2.11439 2.25545 3.13072 3.17344 3.58916 3.72093 3.87508 4.22350 4.31585 4.40301 4.47101 4.56910 4.58203 4.63902 4.66521 4.78648 4.85786 4.91817 4.99753 5.00980 5.05493 5.14105 5.17283 5.23738 5.27905 5.29455 5.33711 5.35431 5.44965 5.45750 5.50673 5.59377 5.62061 5.74615 5.97929 6.11545 6.55574 7.24048 7.61453 8.17487 8.69634 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031692 B = 0.007160 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.285369 B = 3909.419405 C = 4079.375499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 H 0.100 0.900 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.064 4.064 7 C -0.139 4.139 8 C 0.435 3.565 9 O -0.611 6.611 10 N -0.467 5.467 11 C 0.119 3.881 12 C -0.337 4.337 13 H 0.073 0.927 14 C -0.008 4.008 15 N -0.900 5.900 16 Si 0.987 3.013 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.273 1.273 20 C -0.049 4.049 21 C -0.085 4.085 22 C -0.132 4.132 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.035 0.965 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.269 0.731 37 H 0.033 0.967 38 H 0.019 0.981 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 13.695 -0.955 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 H 0.118 0.882 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.067 4.067 7 C -0.196 4.196 8 C 0.226 3.774 9 O -0.499 6.499 10 N -0.185 5.185 11 C -0.024 4.024 12 C -0.466 4.466 13 H 0.091 0.909 14 C -0.208 4.208 15 N -0.541 5.541 16 Si 0.811 3.189 17 H -0.203 1.203 18 H -0.192 1.192 19 H -0.198 1.198 20 C -0.050 4.050 21 C -0.141 4.141 22 C -0.189 4.189 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.054 0.946 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.037 0.963 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.447 13.371 -0.805 13.617 hybrid contribution 0.015 -1.840 0.140 1.845 sum -2.431 11.532 -0.665 11.804 Atomic orbital electron populations 1.21837 0.94970 1.01076 1.01923 1.22036 0.95756 0.99134 0.92696 0.88203 1.22542 0.95201 0.99141 0.98609 1.22800 0.98671 1.01831 0.92761 1.21214 0.97716 0.90038 0.97723 1.22149 0.95470 1.02965 0.98983 1.21142 0.83313 0.89847 0.83125 1.90705 1.29180 1.80749 1.49279 1.44045 1.21120 1.05687 1.47669 1.22030 0.87896 0.96596 0.95847 1.19676 1.14739 0.82835 1.29310 0.90928 1.25994 0.94943 1.04173 0.95702 1.70287 1.13692 1.35505 1.34567 0.85087 0.77928 0.77358 0.78479 1.20291 1.19234 1.19835 1.21139 0.92862 0.94705 0.96247 1.22020 0.95884 0.95061 1.01184 1.21962 1.01709 0.98187 0.97005 0.94404 0.91998 0.91607 0.89089 0.94640 0.87840 0.92426 0.92502 0.88217 0.93825 0.90008 0.93841 0.93814 0.92106 0.94787 0.96256 0.94329 0.90172 0.91974 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 7.99 71.98 0.58 -2.88 16 2 C -0.08 -2.00 2.91 -9.72 -0.03 -2.03 16 3 H 0.10 2.00 7.84 -2.39 -0.02 1.98 16 4 C -0.12 -3.33 6.33 31.88 0.20 -3.13 16 5 C -0.12 -3.82 4.41 31.67 0.14 -3.68 16 6 C -0.06 -2.28 0.61 -52.21 -0.03 -2.31 16 7 C -0.14 -4.28 6.92 71.98 0.50 -3.78 16 8 C 0.43 21.46 6.24 87.66 0.55 22.01 16 9 O -0.61 -34.02 10.07 -3.06 -0.03 -34.05 16 10 N -0.47 -24.84 3.01 -658.88 -1.98 -26.83 16 11 C 0.12 5.52 6.11 127.77 0.78 6.30 16 12 C -0.34 -19.87 9.55 84.04 0.80 -19.07 16 13 H 0.07 4.56 7.20 -2.91 -0.02 4.54 16 14 C -0.01 -0.44 5.46 84.93 0.46 0.02 16 15 N -0.90 -48.55 9.45 21.66 0.20 -48.34 16 16 Si 0.99 44.24 29.56 68.60 2.03 46.27 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 C -0.05 -1.56 0.86 -51.46 -0.04 -1.60 16 21 C -0.09 -3.37 5.39 71.98 0.39 -2.98 16 22 C -0.13 -3.34 7.20 71.98 0.52 -2.82 16 23 H 0.04 1.12 6.40 -2.39 -0.02 1.10 16 24 H 0.06 1.37 7.84 -2.38 -0.02 1.35 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.03 1.21 8.06 -2.39 -0.02 1.19 16 28 H 0.10 2.46 7.85 -2.39 -0.02 2.44 16 29 H 0.06 2.10 5.33 -2.39 -0.01 2.09 16 30 H 0.06 1.84 5.52 -2.39 -0.01 1.82 16 31 H 0.10 2.26 6.47 -2.39 -0.02 2.24 16 32 H 0.04 1.45 7.01 -2.38 -0.02 1.43 16 33 H 0.08 3.09 2.90 -2.39 -0.01 3.08 16 34 H 0.04 2.16 7.07 -2.39 -0.02 2.14 16 35 H 0.04 2.18 6.99 -2.39 -0.02 2.16 16 36 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 37 H 0.03 1.56 6.41 -10.40 -0.07 1.49 16 38 H 0.02 0.66 6.65 -2.39 -0.02 0.65 16 39 H 0.04 1.80 5.76 -19.87 -0.11 1.68 16 40 H 0.08 1.60 6.61 -2.39 -0.02 1.58 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.18 6.86 -2.39 -0.02 1.17 16 Total: -1.00 -66.70 294.87 5.88 -60.82 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.85 Total: 18.08 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 4.81 Total: -15.96 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.78 Total: -75.17 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.03 Total: -34.05 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.70 5.88 -60.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699006438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.624 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds