Wall clock time and date at job start Mon Mar 30 2020 06:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.43157 * 2 1 4 4 C 1.54887 * 110.48626 * 122.53837 * 2 1 3 5 5 C 1.54885 * 102.75333 * 156.62079 * 4 2 1 6 6 C 1.54272 * 104.19087 * 322.05904 * 5 4 2 7 7 C 1.53001 * 110.03192 * 264.27365 * 6 5 4 8 8 C 1.50699 * 110.03034 * 142.89372 * 6 5 4 9 9 O 1.21288 * 120.00480 * 353.86913 * 8 6 5 10 10 N 1.34782 * 120.00069 * 173.87032 * 8 6 5 11 11 C 1.46502 * 119.99802 * 357.37054 * 10 8 6 12 12 C 1.37094 * 120.00094 * 177.36828 * 10 8 6 13 13 H 1.07993 * 120.00382 * 327.46899 * 12 10 8 14 14 C 1.38956 * 119.99819 * 147.47199 * 12 10 8 15 15 N 1.31417 * 119.99548 * 335.51377 * 14 12 10 16 16 Si 1.86800 * 119.99925 * 155.52109 * 14 12 10 17 17 H 1.48496 * 109.47393 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46501 * 239.99194 * 16 14 12 19 19 H 1.48499 * 109.47006 * 119.99983 * 16 14 12 20 20 C 1.53875 * 106.59974 * 23.60717 * 6 5 4 21 21 C 1.53004 * 110.03043 * 119.28393 * 20 6 5 22 22 C 1.53004 * 110.03081 * 240.71524 * 20 6 5 23 23 H 1.09000 * 109.46868 * 298.91455 * 1 2 3 24 24 H 1.08999 * 109.47068 * 58.91664 * 1 2 3 25 25 H 1.08995 * 109.47133 * 178.91721 * 1 2 3 26 26 H 1.09005 * 110.75849 * 38.30365 * 4 2 1 27 27 H 1.09006 * 110.91502 * 275.01146 * 4 2 1 28 28 H 1.08992 * 110.49318 * 203.38149 * 5 4 2 29 29 H 1.09005 * 110.59943 * 80.78424 * 5 4 2 30 30 H 1.09006 * 109.47210 * 286.42642 * 7 6 5 31 31 H 1.09002 * 109.47308 * 46.42334 * 7 6 5 32 32 H 1.08990 * 109.47165 * 166.43019 * 7 6 5 33 33 H 1.08995 * 109.47116 * 275.79672 * 11 10 8 34 34 H 1.09003 * 109.46926 * 35.79718 * 11 10 8 35 35 H 1.08996 * 109.47206 * 155.79339 * 11 10 8 36 36 H 0.96998 * 120.00078 * 356.44529 * 15 14 12 37 37 H 1.09000 * 109.46612 * 67.24012 * 21 20 6 38 38 H 1.09001 * 109.47009 * 187.23384 * 21 20 6 39 39 H 1.08993 * 109.47218 * 307.24427 * 21 20 6 40 40 H 1.08998 * 109.46626 * 69.89352 * 22 20 6 41 41 H 1.08995 * 109.46962 * 189.89660 * 22 20 6 42 42 H 1.09000 * 109.47024 * 309.89710 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7616 6 6 3.3165 -1.5415 -0.7320 7 6 3.1109 -3.0481 -0.9019 8 6 4.5280 -1.0953 -1.5093 9 8 5.3992 -0.4550 -0.9598 10 7 4.6435 -1.4079 -2.8153 11 6 3.6197 -2.2301 -3.4649 12 6 5.7189 -0.9564 -3.5357 13 1 6.1656 -0.0022 -3.2985 14 6 6.2343 -1.7265 -4.5712 15 7 6.0538 -3.0283 -4.5745 16 14 7.1837 -0.9116 -5.9582 17 1 7.2460 0.5531 -5.7216 18 1 6.4983 -1.1755 -7.2489 19 1 8.5610 -1.4646 -6.0070 20 6 2.0699 -0.7804 -1.2162 21 6 2.4507 0.1910 -2.3353 22 6 1.0138 -1.7685 -1.7158 23 1 -0.3633 0.4969 0.8996 24 1 -0.3633 0.5306 -0.8801 25 1 -0.3633 -1.0274 -0.0194 26 1 1.4580 -1.6582 1.4245 27 1 2.1250 -0.1381 2.1023 28 1 3.8316 -2.0705 1.3173 29 1 4.1916 -0.3711 0.8834 30 1 4.0570 -3.5645 -0.7396 31 1 2.3766 -3.3987 -0.1765 32 1 2.7527 -3.2544 -1.9103 33 1 3.8342 -3.2841 -3.2884 34 1 2.6410 -1.9845 -3.0527 35 1 3.6221 -2.0334 -4.5370 36 1 5.6060 -3.4577 -3.8289 37 1 2.7567 -0.3723 -3.2168 38 1 1.5918 0.8148 -2.5828 39 1 3.2749 0.8224 -2.0035 40 1 0.6043 -2.3208 -0.8701 41 1 0.2134 -1.2229 -2.2155 42 1 1.4717 -2.4655 -2.4176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699122906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:03 Heat of formation + Delta-G solvation = -34.413047 kcal Electronic energy + Delta-G solvation = -21260.157267 eV Core-core repulsion = 18433.332039 eV Total energy + Delta-G solvation = -2826.825228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45268 -39.10946 -37.12215 -34.38850 -33.51863 -32.55683 -29.95277 -28.30360 -27.92480 -26.27112 -24.92079 -24.45390 -22.47381 -20.43621 -19.62323 -18.64022 -17.50472 -17.11159 -16.74304 -16.03936 -15.79713 -15.55483 -15.04243 -14.82710 -14.44568 -14.15385 -13.92317 -13.56277 -13.53613 -13.24866 -12.97231 -12.79494 -12.67647 -12.54663 -12.38309 -12.14048 -11.99585 -11.89867 -11.80634 -11.59719 -11.48575 -11.25801 -11.17882 -10.95125 -10.90079 -10.14482 -9.75234 -8.75779 -6.09887 1.49505 1.50988 1.77987 2.03761 2.38738 2.92421 3.04373 3.45145 3.55788 3.71951 4.11169 4.24287 4.28907 4.30354 4.35549 4.38637 4.41430 4.52484 4.55305 4.72195 4.73539 4.76170 4.82980 4.86719 4.88906 4.93906 5.05357 5.07679 5.14523 5.22016 5.22514 5.29602 5.36327 5.41980 5.47161 5.55560 5.69674 5.80812 5.93067 6.68286 6.93969 7.43386 7.97405 8.50154 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.033842 B = 0.007322 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.178537 B = 3823.174927 C = 3910.493191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.051 0.949 4 C -0.104 4.104 5 C -0.110 4.110 6 C -0.070 4.070 7 C -0.150 4.150 8 C 0.462 3.538 9 O -0.637 6.637 10 N -0.465 5.465 11 C 0.063 3.937 12 C -0.426 4.426 13 H 0.047 0.953 14 C -0.026 4.026 15 N -0.894 5.894 16 Si 1.126 2.874 17 H -0.281 1.281 18 H -0.261 1.261 19 H -0.280 1.280 20 C -0.046 4.046 21 C -0.157 4.157 22 C -0.151 4.151 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.119 0.881 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.013 0.987 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 0.309 5.799 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.070 0.930 4 C -0.141 4.141 5 C -0.148 4.148 6 C -0.074 4.074 7 C -0.207 4.207 8 C 0.253 3.747 9 O -0.524 6.524 10 N -0.184 5.184 11 C -0.079 4.079 12 C -0.554 4.554 13 H 0.065 0.935 14 C -0.229 4.229 15 N -0.529 5.529 16 Si 0.946 3.054 17 H -0.207 1.207 18 H -0.186 1.186 19 H -0.206 1.206 20 C -0.046 4.046 21 C -0.214 4.214 22 C -0.207 4.207 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.032 0.968 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.546 0.292 4.589 15.256 hybrid contribution 0.408 0.486 1.404 1.541 sum -14.138 0.778 5.993 15.375 Atomic orbital electron populations 1.21862 0.92259 1.03311 1.01981 1.21988 0.97338 0.97727 0.93262 0.93019 1.22518 0.93767 1.00601 0.97213 1.22322 0.98854 1.00928 0.92741 1.21448 0.92481 0.97589 0.95842 1.22425 1.01460 0.92114 1.04692 1.21132 0.88954 0.82696 0.81902 1.90434 1.45923 1.46232 1.69814 1.43704 1.20339 1.47048 1.07330 1.22658 0.93157 0.94102 0.97942 1.20282 1.13040 1.04743 1.17340 0.93491 1.27719 0.97955 0.94577 1.02647 1.70824 1.38273 1.09063 1.34711 0.82776 0.75291 0.74315 0.73024 1.20660 1.18594 1.20594 1.21130 0.93016 0.95156 0.95326 1.22383 1.00042 0.99542 0.99408 1.22392 0.97607 0.98561 1.02128 0.91888 0.92494 0.90300 0.88835 0.90707 0.91497 0.93757 0.95463 0.88478 0.89621 0.94054 0.86382 0.93443 0.92497 0.91783 0.90770 0.96770 0.89337 0.90483 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.16 71.98 0.59 -1.75 16 2 C -0.08 -2.11 2.89 -9.72 -0.03 -2.14 16 3 H 0.05 1.50 7.86 -2.39 -0.02 1.49 16 4 C -0.10 -2.48 6.33 31.88 0.20 -2.28 16 5 C -0.11 -3.79 5.71 31.67 0.18 -3.61 16 6 C -0.07 -2.58 0.61 -52.20 -0.03 -2.62 16 7 C -0.15 -4.72 6.41 71.98 0.46 -4.26 16 8 C 0.46 23.79 4.48 87.66 0.39 24.18 16 9 O -0.64 -39.20 15.21 -3.05 -0.05 -39.24 16 10 N -0.47 -24.51 1.96 -658.90 -1.29 -25.80 16 11 C 0.06 2.73 5.32 127.77 0.68 3.41 16 12 C -0.43 -25.59 8.90 84.04 0.75 -24.84 16 13 H 0.05 3.10 7.72 -2.91 -0.02 3.07 16 14 C -0.03 -1.49 4.75 84.93 0.40 -1.08 16 15 N -0.89 -51.56 12.96 21.67 0.28 -51.28 16 16 Si 1.13 50.09 29.99 68.60 2.06 52.14 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 C -0.05 -1.35 0.56 -51.46 -0.03 -1.38 16 21 C -0.16 -5.62 7.01 71.98 0.50 -5.11 16 22 C -0.15 -3.23 5.72 71.98 0.41 -2.82 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.95 7.99 -2.39 -0.02 0.93 16 25 H 0.08 1.09 6.10 -2.39 -0.01 1.08 16 26 H 0.09 1.73 8.06 -2.38 -0.02 1.71 16 27 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.07 2.15 7.84 -2.39 -0.02 2.13 16 29 H 0.04 1.87 6.80 -2.38 -0.02 1.85 16 30 H 0.03 0.97 8.09 -2.38 -0.02 0.95 16 31 H 0.10 2.25 7.60 -2.39 -0.02 2.23 16 32 H 0.09 2.56 3.00 -2.39 -0.01 2.55 16 33 H 0.04 1.78 5.74 -2.39 -0.01 1.77 16 34 H 0.12 4.08 1.41 -2.39 0.00 4.07 16 35 H 0.05 2.16 7.52 -2.39 -0.02 2.14 16 36 H 0.26 15.39 6.28 -92.71 -0.58 14.81 16 37 H 0.06 2.51 4.14 -2.39 -0.01 2.50 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.01 0.60 7.10 -2.39 -0.02 0.58 16 40 H 0.09 1.46 6.35 -2.39 -0.02 1.45 16 41 H 0.08 1.38 7.52 -2.39 -0.02 1.36 16 42 H 0.06 1.50 3.99 -2.39 -0.01 1.49 16 Total: -1.00 -75.28 293.83 6.69 -68.60 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.20 Total: 19.89 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 4.48 Total: -24.31 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.01 Total: -77.08 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.05 Total: -39.24 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.06 Total: 52.14 kcal Total: -75.28 6.69 -68.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699122906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.183 kcal (2) G-P(sol) polarization free energy of solvation -75.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds