Wall clock time and date at job start Mon Mar 30 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46890 * 2 1 4 4 N 1.46495 * 109.47558 * 119.99887 * 2 1 3 5 5 C 1.37099 * 119.99976 * 305.32465 * 4 2 1 6 6 H 1.07996 * 119.99861 * 301.87191 * 5 4 2 7 7 C 1.38953 * 120.00057 * 122.13896 * 5 4 2 8 8 N 1.31409 * 119.99967 * 181.45961 * 7 5 4 9 9 Si 1.86806 * 119.99970 * 1.46501 * 7 5 4 10 10 H 1.48501 * 109.47121 * 95.81331 * 9 7 5 11 11 H 1.48497 * 109.46667 * 215.81301 * 9 7 5 12 12 H 1.48495 * 109.46876 * 335.81292 * 9 7 5 13 13 C 1.34776 * 120.00298 * 125.31730 * 4 2 1 14 14 O 1.21291 * 120.00340 * 175.37858 * 13 4 2 15 15 C 1.50700 * 119.99675 * 355.38283 * 13 4 2 16 16 H 1.09002 * 115.55339 * 42.50456 * 15 13 4 17 17 C 1.52998 * 117.50146 * 256.82816 * 15 13 4 18 18 C 1.53007 * 117.49799 * 188.16929 * 15 13 4 19 19 H 1.08998 * 117.49827 * 214.98124 * 18 15 13 20 20 C 1.52998 * 117.49822 * 359.97438 * 18 15 13 21 21 C 1.53001 * 109.46891 * 58.92777 * 20 18 15 22 22 C 1.52996 * 109.46966 * 178.92962 * 20 18 15 23 23 C 1.53002 * 109.47191 * 298.92889 * 20 18 15 24 24 H 1.09007 * 109.47217 * 305.07052 * 1 2 3 25 25 H 1.08999 * 109.47316 * 65.06964 * 1 2 3 26 26 H 1.09000 * 109.47322 * 185.07172 * 1 2 3 27 27 H 1.09000 * 109.46934 * 240.00325 * 2 1 3 28 28 H 1.09008 * 109.46710 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47155 * 299.99538 * 3 2 1 30 30 H 1.08991 * 109.47207 * 60.00261 * 3 2 1 31 31 H 0.97002 * 120.00023 * 180.02562 * 8 7 5 32 32 H 1.08999 * 117.49703 * 0.02562 * 17 15 13 33 33 H 1.09000 * 117.50590 * 144.99720 * 17 15 13 34 34 H 1.09001 * 109.47039 * 92.04023 * 21 20 18 35 35 H 1.09001 * 109.46770 * 212.03068 * 21 20 18 36 36 H 1.08994 * 109.47528 * 332.03556 * 21 20 18 37 37 H 1.08991 * 109.47248 * 60.00078 * 22 20 18 38 38 H 1.08999 * 109.46997 * 180.02562 * 22 20 18 39 39 H 1.09000 * 109.47142 * 299.99600 * 22 20 18 40 40 H 1.08998 * 109.46907 * 27.72624 * 23 20 18 41 41 H 1.08998 * 109.46841 * 147.72468 * 23 20 18 42 42 H 1.08997 * 109.46697 * 267.72354 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 1.5996 -0.2892 2.4384 6 1 1.7685 0.7270 2.7629 7 6 0.9630 -1.1912 3.2820 8 7 0.5361 -0.7991 4.4613 9 14 0.7141 -2.9614 2.7398 10 1 1.8125 -3.8032 3.2785 11 1 -0.5877 -3.4580 3.2535 12 1 0.7197 -3.0302 1.2565 13 6 2.8792 -1.7205 1.0754 14 8 3.3486 -2.2380 2.0668 15 6 3.2585 -2.2291 -0.2915 16 1 3.4561 -1.4622 -1.0404 17 6 2.6080 -3.5297 -0.7670 18 6 4.0843 -3.5153 -0.3627 19 1 4.8248 -3.5945 -1.1585 20 6 4.4622 -4.1862 0.9594 21 6 3.1907 -4.5398 1.7335 22 6 5.2575 -5.4618 0.6749 23 6 5.3161 -3.2277 1.7919 24 1 -0.3634 0.5905 0.8411 25 1 -0.3634 0.4332 -0.9319 26 1 -0.3634 -1.0236 0.0908 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.0920 -1.4289 5.0504 32 1 1.9053 -4.0173 -0.0913 33 1 2.3775 -3.6185 -1.8287 34 1 2.8850 -5.5562 1.4852 35 1 3.3858 -4.4704 2.8037 36 1 2.3956 -3.8449 1.4633 37 1 6.1632 -5.2099 0.1235 38 1 5.5263 -5.9400 1.6168 39 1 4.6491 -6.1447 0.0819 40 1 5.0646 -2.1992 1.5334 41 1 5.1211 -3.3942 2.8513 42 1 6.3710 -3.4072 1.5840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699766289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:46 Heat of formation + Delta-G solvation = 34.818584 kcal Electronic energy + Delta-G solvation = -21247.142135 eV Core-core repulsion = 18423.319016 eV Total energy + Delta-G solvation = -2823.823119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35452 -37.44137 -35.25216 -33.54473 -32.33002 -30.37714 -27.07430 -26.64667 -26.51413 -25.74036 -22.72761 -22.47027 -20.77693 -19.15188 -17.95941 -16.79910 -16.22889 -15.45008 -14.80661 -14.55667 -14.15327 -13.58097 -13.47062 -13.31839 -12.93399 -12.41705 -12.32956 -12.17444 -12.17418 -11.64414 -11.55233 -11.35830 -11.10659 -10.93656 -10.71432 -10.59183 -10.41830 -10.27380 -10.17940 -9.89133 -9.71262 -9.64893 -9.48527 -9.31379 -8.58968 -7.98633 -7.29015 -6.11712 -4.06471 3.29696 3.37828 3.55119 3.68623 4.26036 4.44210 4.57182 4.97275 5.13537 5.28044 5.34480 5.42838 5.57715 5.61527 5.68425 5.77399 5.89694 5.93135 5.95997 6.06731 6.14340 6.17843 6.23464 6.30355 6.32773 6.40080 6.42867 6.48320 6.52577 6.55654 6.75624 6.83524 6.89978 6.96642 7.03044 7.17344 7.37089 7.90272 8.22087 8.84270 9.03397 9.44526 9.91357 10.91445 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.011427 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.398409 B = 2449.775302 C = 3056.455687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 C -0.153 4.153 4 N -0.465 5.465 5 C -0.324 4.324 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.244 1.244 11 H -0.317 1.317 12 H -0.273 1.273 13 C 0.486 3.514 14 O -0.521 6.521 15 C -0.180 4.180 16 H 0.113 0.887 17 C -0.171 4.171 18 C -0.112 4.112 19 H 0.102 0.898 20 C -0.026 4.026 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.110 4.110 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.269 0.731 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 -4.026 -11.509 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.211 4.211 4 N -0.189 5.189 5 C -0.450 4.450 6 H 0.106 0.894 7 C -0.125 4.125 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.169 1.169 11 H -0.247 1.247 12 H -0.200 1.200 13 C 0.276 3.724 14 O -0.403 6.403 15 C -0.202 4.202 16 H 0.130 0.870 17 C -0.209 4.209 18 C -0.131 4.131 19 H 0.120 0.880 20 C -0.026 4.026 21 C -0.194 4.194 22 C -0.193 4.193 23 C -0.166 4.166 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 4.290 -4.293 -10.798 12.387 hybrid contribution -0.354 -0.716 -0.336 0.867 sum 3.936 -5.009 -11.134 12.828 Atomic orbital electron populations 1.21963 0.95659 1.01969 1.00998 1.21121 0.94402 0.93209 0.89234 1.22059 1.00525 0.96997 1.01560 1.43731 1.39194 1.30141 1.05794 1.18615 1.37626 0.98996 0.89808 0.89424 1.25469 0.92811 0.99380 0.94805 1.69690 1.37364 1.36019 1.08656 0.86941 0.75941 0.85551 0.78536 1.16874 1.24692 1.19990 1.19638 0.80146 0.83647 0.88965 1.90664 1.52113 1.57930 1.39602 1.22379 1.06854 0.92084 0.98843 0.86960 1.23265 0.96830 0.99604 1.01170 1.22416 0.93251 0.98397 0.99042 0.88035 1.19917 0.96102 0.93975 0.92572 1.22840 0.97940 0.98171 1.00492 1.21933 0.99237 0.97370 1.00779 1.22074 0.94089 1.01013 0.99470 0.91143 0.93564 0.93245 0.91362 0.93352 0.93213 0.91607 0.92077 0.87809 0.88932 0.95863 0.91853 0.90797 0.93300 0.93008 0.93390 0.90296 0.92802 0.96830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.98 37.15 0.33 -2.34 16 2 C 0.12 2.32 3.14 -67.94 -0.21 2.11 16 3 C -0.15 -2.56 9.24 37.16 0.34 -2.22 16 4 N -0.47 -10.72 1.97 -107.73 -0.21 -10.93 16 5 C -0.32 -8.83 8.01 -14.93 -0.12 -8.95 16 6 H 0.09 2.59 7.61 -52.49 -0.40 2.19 16 7 C 0.08 2.35 5.32 -17.47 -0.09 2.26 16 8 N -0.88 -26.60 13.96 55.50 0.77 -25.82 16 9 Si 0.90 23.08 22.24 -169.99 -3.78 19.30 16 10 H -0.24 -6.27 4.41 56.52 0.25 -6.02 16 11 H -0.32 -8.33 7.11 56.52 0.40 -7.93 16 12 H -0.27 -6.64 5.12 56.52 0.29 -6.35 16 13 C 0.49 10.85 3.88 -10.99 -0.04 10.81 16 14 O -0.52 -12.81 6.13 5.55 0.03 -12.77 16 15 C -0.18 -3.20 4.50 -91.77 -0.41 -3.62 16 16 H 0.11 1.74 6.98 -51.93 -0.36 1.38 16 17 C -0.17 -2.79 9.39 -26.69 -0.25 -3.04 16 18 C -0.11 -1.82 5.10 -90.58 -0.46 -2.28 16 19 H 0.10 1.39 8.12 -51.93 -0.42 0.97 16 20 C -0.03 -0.45 0.77 -154.51 -0.12 -0.57 16 21 C -0.14 -2.79 4.98 37.16 0.18 -2.61 16 22 C -0.14 -1.95 8.09 37.16 0.30 -1.65 16 23 C -0.11 -2.08 7.47 37.16 0.28 -1.81 16 24 H 0.07 1.41 7.73 -51.93 -0.40 1.00 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.12 5.59 -51.93 -0.29 0.83 16 28 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.22 7.45 -51.93 -0.39 0.83 16 31 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.10 1.93 4.78 -51.93 -0.25 1.68 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 35 H 0.06 1.41 5.86 -51.93 -0.30 1.11 16 36 H 0.07 1.61 0.31 -51.93 -0.02 1.59 16 37 H 0.05 0.63 8.11 -51.93 -0.42 0.20 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.08 1.66 5.08 -51.98 -0.26 1.39 16 41 H 0.05 1.12 6.98 -51.93 -0.36 0.75 16 42 H 0.01 0.22 7.78 -51.93 -0.40 -0.19 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -30.06 295.26 -6.05 -36.12 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.04 Total: 3.57 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.27 Total: -13.91 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.56 Total: -36.75 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.03 Total: -12.77 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -3.78 Total: 19.30 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.06 -6.05 -36.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699766289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.934 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds