Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46890 * 2 1 4 4 N 1.46495 * 109.47558 * 119.99887 * 2 1 3 5 5 C 1.37099 * 119.99976 * 305.32465 * 4 2 1 6 6 H 1.07996 * 119.99861 * 301.87191 * 5 4 2 7 7 C 1.38953 * 120.00057 * 122.13896 * 5 4 2 8 8 N 1.31409 * 119.99967 * 181.45961 * 7 5 4 9 9 Si 1.86806 * 119.99970 * 1.46501 * 7 5 4 10 10 H 1.48501 * 109.47121 * 95.81331 * 9 7 5 11 11 H 1.48497 * 109.46667 * 215.81301 * 9 7 5 12 12 H 1.48495 * 109.46876 * 335.81292 * 9 7 5 13 13 C 1.34776 * 120.00298 * 125.31730 * 4 2 1 14 14 O 1.21291 * 120.00340 * 175.37858 * 13 4 2 15 15 C 1.50700 * 119.99675 * 355.38283 * 13 4 2 16 16 H 1.09002 * 115.55339 * 42.50456 * 15 13 4 17 17 C 1.52998 * 117.50146 * 256.82816 * 15 13 4 18 18 C 1.53007 * 117.49799 * 188.16929 * 15 13 4 19 19 H 1.08998 * 117.49827 * 214.98124 * 18 15 13 20 20 C 1.52998 * 117.49822 * 359.97438 * 18 15 13 21 21 C 1.53001 * 109.46891 * 58.92777 * 20 18 15 22 22 C 1.52996 * 109.46966 * 178.92962 * 20 18 15 23 23 C 1.53002 * 109.47191 * 298.92889 * 20 18 15 24 24 H 1.09007 * 109.47217 * 305.07052 * 1 2 3 25 25 H 1.08999 * 109.47316 * 65.06964 * 1 2 3 26 26 H 1.09000 * 109.47322 * 185.07172 * 1 2 3 27 27 H 1.09000 * 109.46934 * 240.00325 * 2 1 3 28 28 H 1.09008 * 109.46710 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47155 * 299.99538 * 3 2 1 30 30 H 1.08991 * 109.47207 * 60.00261 * 3 2 1 31 31 H 0.97002 * 120.00023 * 180.02562 * 8 7 5 32 32 H 1.08999 * 117.49703 * 0.02562 * 17 15 13 33 33 H 1.09000 * 117.50590 * 144.99720 * 17 15 13 34 34 H 1.09001 * 109.47039 * 92.04023 * 21 20 18 35 35 H 1.09001 * 109.46770 * 212.03068 * 21 20 18 36 36 H 1.08994 * 109.47528 * 332.03556 * 21 20 18 37 37 H 1.08991 * 109.47248 * 60.00078 * 22 20 18 38 38 H 1.08999 * 109.46997 * 180.02562 * 22 20 18 39 39 H 1.09000 * 109.47142 * 299.99600 * 22 20 18 40 40 H 1.08998 * 109.46907 * 27.72624 * 23 20 18 41 41 H 1.08998 * 109.46841 * 147.72468 * 23 20 18 42 42 H 1.08997 * 109.46697 * 267.72354 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 1.5996 -0.2892 2.4384 6 1 1.7685 0.7270 2.7629 7 6 0.9630 -1.1912 3.2820 8 7 0.5361 -0.7991 4.4613 9 14 0.7141 -2.9614 2.7398 10 1 1.8125 -3.8032 3.2785 11 1 -0.5877 -3.4580 3.2535 12 1 0.7197 -3.0302 1.2565 13 6 2.8792 -1.7205 1.0754 14 8 3.3486 -2.2380 2.0668 15 6 3.2585 -2.2291 -0.2915 16 1 3.4561 -1.4622 -1.0404 17 6 2.6080 -3.5297 -0.7670 18 6 4.0843 -3.5153 -0.3627 19 1 4.8248 -3.5945 -1.1585 20 6 4.4622 -4.1862 0.9594 21 6 3.1907 -4.5398 1.7335 22 6 5.2575 -5.4618 0.6749 23 6 5.3161 -3.2277 1.7919 24 1 -0.3634 0.5905 0.8411 25 1 -0.3634 0.4332 -0.9319 26 1 -0.3634 -1.0236 0.0908 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.0920 -1.4289 5.0504 32 1 1.9053 -4.0173 -0.0913 33 1 2.3775 -3.6185 -1.8287 34 1 2.8850 -5.5562 1.4852 35 1 3.3858 -4.4704 2.8037 36 1 2.3956 -3.8449 1.4633 37 1 6.1632 -5.2099 0.1235 38 1 5.5263 -5.9400 1.6168 39 1 4.6491 -6.1447 0.0819 40 1 5.0646 -2.1992 1.5334 41 1 5.1211 -3.3942 2.8513 42 1 6.3710 -3.4072 1.5840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699766289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = 16.154337 kcal Electronic energy + Delta-G solvation = -21247.951477 eV Core-core repulsion = 18423.319016 eV Total energy + Delta-G solvation = -2824.632462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.90671 -39.01455 -36.90571 -34.92860 -34.37266 -32.10627 -28.59859 -27.98188 -27.92440 -27.59163 -24.37139 -23.77060 -22.31303 -20.89185 -19.53874 -18.27507 -17.98688 -17.28375 -16.38617 -16.11563 -15.84499 -15.23484 -14.98837 -14.85383 -14.60794 -14.08697 -13.87898 -13.69153 -13.48239 -13.18553 -13.00549 -12.84329 -12.68388 -12.46486 -12.29561 -12.22885 -11.94774 -11.82510 -11.71471 -11.52545 -11.37135 -11.21837 -10.98973 -10.69851 -10.63737 -9.75514 -9.18022 -8.30965 -6.26786 1.24128 1.32020 1.45516 1.98730 2.35923 2.75891 2.99579 3.09389 3.67366 3.94193 3.97471 4.11206 4.17057 4.27490 4.35888 4.40190 4.47810 4.56106 4.75341 4.82432 4.87577 4.89655 4.92851 4.95439 4.98635 5.01886 5.08690 5.09490 5.16412 5.24066 5.32350 5.33375 5.49618 5.53796 5.55929 5.65023 5.78777 5.87501 6.05689 6.90339 7.07151 7.42788 8.04110 8.73909 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.011427 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.398409 B = 2449.775302 C = 3056.455687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.118 3.882 3 C -0.147 4.147 4 N -0.484 5.484 5 C -0.304 4.304 6 H 0.050 0.950 7 C 0.030 3.970 8 N -0.931 5.931 9 Si 0.951 3.049 10 H -0.252 1.252 11 H -0.330 1.330 12 H -0.250 1.250 13 C 0.478 3.522 14 O -0.551 6.551 15 C -0.194 4.194 16 H 0.145 0.855 17 C -0.159 4.159 18 C -0.102 4.102 19 H 0.142 0.858 20 C -0.031 4.031 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.102 4.102 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.034 0.966 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.040 0.960 35 H 0.026 0.974 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 -5.321 -16.157 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.205 4.205 4 N -0.208 5.208 5 C -0.432 4.432 6 H 0.068 0.932 7 C -0.171 4.171 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.178 1.178 11 H -0.261 1.261 12 H -0.175 1.175 13 C 0.269 3.731 14 O -0.434 6.434 15 C -0.215 4.215 16 H 0.163 0.837 17 C -0.196 4.196 18 C -0.120 4.120 19 H 0.160 0.840 20 C -0.031 4.031 21 C -0.195 4.195 22 C -0.187 4.187 23 C -0.158 4.158 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.512 -5.579 -15.490 17.362 hybrid contribution -0.640 -0.229 1.119 1.309 sum 4.872 -5.808 -14.371 16.248 Atomic orbital electron populations 1.21942 0.95421 1.00836 1.02009 1.21442 0.94723 0.94029 0.88313 1.22006 1.00504 0.95969 1.02001 1.43976 1.40185 1.31108 1.05522 1.18359 1.35903 0.97153 0.91800 0.93198 1.26121 0.93390 1.02585 0.94973 1.69801 1.40032 1.37003 1.10175 0.86175 0.74519 0.81679 0.79456 1.17782 1.26136 1.17452 1.20517 0.79118 0.82446 0.90997 1.90680 1.52708 1.58564 1.41455 1.22337 1.09074 0.93758 0.96305 0.83737 1.23352 0.96173 0.97139 1.02958 1.22567 0.94317 0.96264 0.98868 0.84034 1.19956 0.94804 0.95364 0.92956 1.22764 0.99203 0.98790 0.98743 1.21867 0.99874 0.95706 1.01206 1.21915 0.95993 1.00163 0.97772 0.94332 0.89092 0.94651 0.87696 0.93298 0.89127 0.94775 0.92384 0.90411 0.84623 0.94153 0.95478 0.92366 0.90996 0.93515 0.91838 0.92615 0.96233 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 8.98 71.98 0.65 -4.30 16 2 C 0.12 4.10 3.14 44.99 0.14 4.24 16 3 C -0.15 -4.61 9.24 71.98 0.66 -3.95 16 4 N -0.48 -22.12 1.97 -613.15 -1.21 -23.33 16 5 C -0.30 -17.28 8.01 84.04 0.67 -16.60 16 6 H 0.05 3.16 7.61 -2.91 -0.02 3.14 16 7 C 0.03 1.82 5.32 84.93 0.45 2.27 16 8 N -0.93 -59.57 13.96 21.66 0.30 -59.27 16 9 Si 0.95 49.69 22.24 68.60 1.53 51.21 16 10 H -0.25 -13.42 4.41 99.48 0.44 -12.98 16 11 H -0.33 -17.65 7.11 99.48 0.71 -16.95 16 12 H -0.25 -11.82 5.12 99.48 0.51 -11.31 16 13 C 0.48 20.75 3.88 87.66 0.34 21.09 16 14 O -0.55 -27.39 6.13 -3.06 -0.02 -27.41 16 15 C -0.19 -6.05 4.50 -11.54 -0.05 -6.10 16 16 H 0.15 3.58 6.98 -2.39 -0.02 3.57 16 17 C -0.16 -4.33 9.39 30.62 0.29 -4.04 16 18 C -0.10 -2.77 5.10 -10.77 -0.05 -2.82 16 19 H 0.14 2.82 8.12 -2.39 -0.02 2.80 16 20 C -0.03 -0.99 0.77 -52.18 -0.04 -1.03 16 21 C -0.14 -5.47 4.98 71.98 0.36 -5.12 16 22 C -0.13 -3.18 8.09 71.98 0.58 -2.60 16 23 C -0.10 -3.76 7.47 71.98 0.54 -3.22 16 24 H 0.04 1.54 7.73 -2.38 -0.02 1.52 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.11 2.92 5.59 -2.39 -0.01 2.90 16 28 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.03 1.27 7.45 -2.39 -0.02 1.25 16 31 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 32 H 0.08 2.59 4.78 -2.39 -0.01 2.58 16 33 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.04 1.39 7.79 -2.39 -0.02 1.37 16 35 H 0.03 1.22 5.86 -2.39 -0.01 1.21 16 36 H 0.06 2.47 0.31 -2.39 0.00 2.47 16 37 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 40 H 0.06 2.30 5.08 -3.20 -0.02 2.29 16 41 H 0.02 0.81 6.98 -2.39 -0.02 0.80 16 42 H 0.04 1.20 7.78 -2.39 -0.02 1.18 16 Total: -1.00 -71.66 295.26 5.66 -65.99 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.53 Total: 14.99 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 4.54 Total: -22.18 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -0.90 Total: -82.60 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.02 Total: -27.41 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 1.53 Total: 51.21 kcal Total: -71.66 5.66 -65.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699766289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.147 kcal (2) G-P(sol) polarization free energy of solvation -71.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds