Wall clock time and date at job start Mon Mar 30 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47119 * 2 1 4 4 N 1.46491 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99792 * 95.50363 * 4 3 2 6 6 H 1.08001 * 120.00161 * 214.18364 * 5 4 3 7 7 C 1.38947 * 120.00295 * 34.18414 * 5 4 3 8 8 N 1.31412 * 119.99587 * 21.47879 * 7 5 4 9 9 Si 1.86799 * 120.00231 * 201.48240 * 7 5 4 10 10 H 1.48503 * 109.47150 * 89.99944 * 9 7 5 11 11 H 1.48505 * 109.46905 * 209.99602 * 9 7 5 12 12 H 1.48498 * 109.46885 * 329.99662 * 9 7 5 13 13 C 1.34775 * 120.00373 * 275.50373 * 4 3 2 14 14 O 1.21293 * 119.99963 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00127 * 359.97438 * 13 4 3 16 16 H 1.09001 * 115.54923 * 325.72541 * 15 13 4 17 17 C 1.53006 * 117.49860 * 111.38922 * 15 13 4 18 18 C 1.53000 * 117.50194 * 180.02562 * 15 13 4 19 19 H 1.08993 * 117.49547 * 0.02562 * 18 15 13 20 20 C 1.52998 * 117.49633 * 145.02115 * 18 15 13 21 21 C 1.52995 * 109.47340 * 60.00165 * 20 18 15 22 22 C 1.52997 * 109.46982 * 180.02562 * 20 18 15 23 23 C 1.53009 * 109.47281 * 300.00179 * 20 18 15 24 24 H 1.08999 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46863 * 300.00040 * 1 2 3 26 26 H 1.08993 * 109.47433 * 59.99605 * 1 2 3 27 27 H 1.09003 * 109.47278 * 119.99821 * 2 1 3 28 28 H 1.08993 * 109.47068 * 240.00533 * 2 1 3 29 29 H 1.09003 * 109.47123 * 300.00557 * 3 2 1 30 30 H 1.09003 * 109.46768 * 60.00127 * 3 2 1 31 31 H 0.96999 * 119.99963 * 180.02562 * 8 7 5 32 32 H 1.08992 * 117.49649 * 214.98388 * 17 15 13 33 33 H 1.08996 * 117.49606 * 359.97438 * 17 15 13 34 34 H 1.09001 * 109.46974 * 60.00015 * 21 20 18 35 35 H 1.08997 * 109.47573 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.47450 * 299.99880 * 21 20 18 37 37 H 1.09004 * 109.47189 * 60.00160 * 22 20 18 38 38 H 1.09005 * 109.47196 * 179.97438 * 22 20 18 39 39 H 1.08994 * 109.47470 * 300.00298 * 22 20 18 40 40 H 1.08999 * 109.46666 * 59.99998 * 23 20 18 41 41 H 1.08997 * 109.46724 * 180.02562 * 23 20 18 42 42 H 1.08995 * 109.46887 * 299.99976 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1909 1.5563 -1.1810 6 1 5.1310 1.0410 -1.3114 7 6 3.6766 2.3345 -2.2108 8 7 2.7980 3.2755 -1.9474 9 14 4.2341 2.0431 -3.9697 10 1 3.3423 1.0449 -4.6127 11 1 4.1744 3.3199 -4.7258 12 1 5.6288 1.5331 -3.9688 13 6 4.1784 1.3308 1.1627 14 8 5.3913 1.3304 1.1631 15 6 3.4245 1.2064 2.4616 16 1 2.4858 1.7580 2.5150 17 6 3.4992 -0.1337 3.1962 18 6 4.2460 1.0834 3.7464 19 1 5.3319 1.0929 3.6522 20 6 3.6873 1.7442 5.0082 21 6 2.3232 1.1363 5.3408 22 6 4.6488 1.5100 6.1750 23 6 3.5313 3.2476 4.7703 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.4387 3.8186 -2.6663 32 1 2.6099 -0.4634 3.7332 33 1 4.0933 -0.9253 2.7398 34 1 2.4343 0.0653 5.5103 35 1 1.9253 1.6067 6.2400 36 1 1.6384 1.3035 4.5095 37 1 5.6204 1.9434 5.9377 38 1 4.2509 1.9811 7.0738 39 1 4.7603 0.4391 6.3446 40 1 2.8465 3.4147 3.9389 41 1 3.1336 3.7183 5.6694 42 1 4.5030 3.6806 4.5333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699770081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:11 Heat of formation + Delta-G solvation = -29.774113 kcal Electronic energy + Delta-G solvation = -19909.565904 eV Core-core repulsion = 17082.941836 eV Total energy + Delta-G solvation = -2826.624069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -39.46915 -37.58239 -35.18820 -33.43303 -32.57134 -31.10196 -27.27428 -27.11368 -26.09193 -24.94363 -22.82594 -22.35726 -20.90190 -18.63101 -17.94096 -16.82809 -16.37137 -15.11759 -14.91878 -14.42221 -13.98755 -13.79373 -13.65293 -13.56631 -13.19400 -12.59087 -12.24281 -12.21824 -12.10431 -11.60225 -11.53170 -11.45820 -11.34354 -11.18141 -10.94936 -10.92120 -10.75940 -10.62347 -10.34721 -10.26353 -10.24356 -9.92922 -9.62866 -9.40791 -8.87315 -8.31445 -7.42381 -6.28513 -3.90225 3.18444 3.27950 3.32934 3.71545 4.17187 4.45460 4.69758 4.98207 5.00639 5.15810 5.20593 5.46976 5.50429 5.52577 5.67258 5.69447 5.77578 5.82777 5.83645 5.91740 5.94697 6.00058 6.05288 6.09643 6.15228 6.21844 6.31844 6.35849 6.44043 6.49176 6.54089 6.55919 6.57753 6.68633 6.79306 6.99375 7.36215 7.63671 8.30604 8.57897 9.24751 9.48635 10.10601 10.74885 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.006353 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.010254 B = 4406.347645 C = 4911.784306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.104 3.896 4 N -0.438 5.438 5 C -0.305 4.305 6 H 0.091 0.909 7 C 0.034 3.966 8 N -0.870 5.870 9 Si 0.917 3.083 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.485 3.515 14 O -0.585 6.585 15 C -0.162 4.162 16 H 0.110 0.890 17 C -0.163 4.163 18 C -0.117 4.117 19 H 0.111 0.889 20 C -0.039 4.039 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.139 4.139 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.267 0.733 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -3.877 10.658 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.020 4.020 4 N -0.155 5.155 5 C -0.433 4.433 6 H 0.109 0.891 7 C -0.169 4.169 8 N -0.509 5.509 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.274 3.726 14 O -0.469 6.469 15 C -0.183 4.183 16 H 0.128 0.872 17 C -0.201 4.201 18 C -0.136 4.136 19 H 0.129 0.871 20 C -0.039 4.039 21 C -0.201 4.201 22 C -0.193 4.193 23 C -0.196 4.196 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.863 -3.712 10.510 12.161 hybrid contribution 0.005 -0.009 -0.982 0.982 sum -4.859 -3.721 9.529 11.325 Atomic orbital electron populations 1.21667 0.96527 1.00537 1.01424 1.21963 0.94704 0.99412 1.01718 1.21644 0.82041 0.94438 1.03859 1.43423 1.04626 1.62715 1.04754 1.19475 1.06907 1.27780 0.89159 0.89143 1.25320 0.97379 0.93751 1.00457 1.69918 1.30909 1.17183 1.32870 0.86076 0.79431 0.77715 0.82415 1.20363 1.21035 1.19366 1.19452 0.87358 0.81905 0.83925 1.90496 1.14131 1.55591 1.86731 1.22325 1.01490 1.01726 0.92772 0.87197 1.23086 1.02660 0.91279 1.03065 1.22317 0.98975 1.00290 0.91977 0.87079 1.20061 0.94967 0.95312 0.93518 1.22001 0.96421 1.00599 1.01061 1.21819 0.99090 1.01433 0.96992 1.21838 1.02231 0.94524 1.01044 0.93555 0.93265 0.92858 0.92880 0.92008 0.86999 0.93612 0.92309 0.88374 0.89153 0.92363 0.93025 0.92447 0.92584 0.92993 0.92709 0.92389 0.93165 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.59 6.19 -26.73 -0.17 -2.75 16 3 C 0.10 2.31 4.71 -4.04 -0.02 2.29 16 4 N -0.44 -11.33 2.56 -114.81 -0.29 -11.62 16 5 C -0.31 -8.63 8.98 -14.93 -0.13 -8.77 16 6 H 0.09 2.69 7.70 -52.49 -0.40 2.29 16 7 C 0.03 0.92 4.94 -17.47 -0.09 0.84 16 8 N -0.87 -23.68 11.31 55.50 0.63 -23.05 16 9 Si 0.92 20.88 29.60 -169.99 -5.03 15.85 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.49 12.23 7.37 -10.99 -0.08 12.15 16 14 O -0.59 -16.88 16.09 5.55 0.09 -16.79 16 15 C -0.16 -3.11 3.67 -91.77 -0.34 -3.45 16 16 H 0.11 2.01 5.45 -51.93 -0.28 1.72 16 17 C -0.16 -2.63 8.99 -26.71 -0.24 -2.87 16 18 C -0.12 -1.96 4.66 -90.61 -0.42 -2.38 16 19 H 0.11 2.11 7.64 -51.93 -0.40 1.72 16 20 C -0.04 -0.51 0.88 -154.51 -0.14 -0.65 16 21 C -0.14 -1.66 7.07 37.16 0.26 -1.40 16 22 C -0.14 -1.58 8.46 37.16 0.31 -1.27 16 23 C -0.14 -1.91 8.31 37.16 0.31 -1.60 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.95 7.40 -51.93 -0.38 0.56 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.11 2.74 5.34 -51.93 -0.28 2.46 16 30 H 0.05 0.94 6.24 -51.93 -0.32 0.62 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.10 1.32 5.85 -51.93 -0.30 1.01 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.06 0.63 6.98 -51.93 -0.36 0.27 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.86 7.29 -51.93 -0.38 0.48 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -30.63 329.83 -7.27 -37.90 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.27 Total: 4.37 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.37 Total: -11.63 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.33 Total: -34.67 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.63 -7.27 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699770081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.130 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.36 seconds