Wall clock time and date at job start Mon Mar 30 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47119 * 2 1 4 4 N 1.46491 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.37102 * 119.99792 * 95.50363 * 4 3 2 6 6 H 1.08001 * 120.00161 * 214.18364 * 5 4 3 7 7 C 1.38947 * 120.00295 * 34.18414 * 5 4 3 8 8 N 1.31412 * 119.99587 * 21.47879 * 7 5 4 9 9 Si 1.86799 * 120.00231 * 201.48240 * 7 5 4 10 10 H 1.48503 * 109.47150 * 89.99944 * 9 7 5 11 11 H 1.48505 * 109.46905 * 209.99602 * 9 7 5 12 12 H 1.48498 * 109.46885 * 329.99662 * 9 7 5 13 13 C 1.34775 * 120.00373 * 275.50373 * 4 3 2 14 14 O 1.21293 * 119.99963 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00127 * 359.97438 * 13 4 3 16 16 H 1.09001 * 115.54923 * 325.72541 * 15 13 4 17 17 C 1.53006 * 117.49860 * 111.38922 * 15 13 4 18 18 C 1.53000 * 117.50194 * 180.02562 * 15 13 4 19 19 H 1.08993 * 117.49547 * 0.02562 * 18 15 13 20 20 C 1.52998 * 117.49633 * 145.02115 * 18 15 13 21 21 C 1.52995 * 109.47340 * 60.00165 * 20 18 15 22 22 C 1.52997 * 109.46982 * 180.02562 * 20 18 15 23 23 C 1.53009 * 109.47281 * 300.00179 * 20 18 15 24 24 H 1.08999 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46863 * 300.00040 * 1 2 3 26 26 H 1.08993 * 109.47433 * 59.99605 * 1 2 3 27 27 H 1.09003 * 109.47278 * 119.99821 * 2 1 3 28 28 H 1.08993 * 109.47068 * 240.00533 * 2 1 3 29 29 H 1.09003 * 109.47123 * 300.00557 * 3 2 1 30 30 H 1.09003 * 109.46768 * 60.00127 * 3 2 1 31 31 H 0.96999 * 119.99963 * 180.02562 * 8 7 5 32 32 H 1.08992 * 117.49649 * 214.98388 * 17 15 13 33 33 H 1.08996 * 117.49606 * 359.97438 * 17 15 13 34 34 H 1.09001 * 109.46974 * 60.00015 * 21 20 18 35 35 H 1.08997 * 109.47573 * 179.97438 * 21 20 18 36 36 H 1.08999 * 109.47450 * 299.99880 * 21 20 18 37 37 H 1.09004 * 109.47189 * 60.00160 * 22 20 18 38 38 H 1.09005 * 109.47196 * 179.97438 * 22 20 18 39 39 H 1.08994 * 109.47470 * 300.00298 * 22 20 18 40 40 H 1.08999 * 109.46666 * 59.99998 * 23 20 18 41 41 H 1.08997 * 109.46724 * 180.02562 * 23 20 18 42 42 H 1.08995 * 109.46887 * 299.99976 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1909 1.5563 -1.1810 6 1 5.1310 1.0410 -1.3114 7 6 3.6766 2.3345 -2.2108 8 7 2.7980 3.2755 -1.9474 9 14 4.2341 2.0431 -3.9697 10 1 3.3423 1.0449 -4.6127 11 1 4.1744 3.3199 -4.7258 12 1 5.6288 1.5331 -3.9688 13 6 4.1784 1.3308 1.1627 14 8 5.3913 1.3304 1.1631 15 6 3.4245 1.2064 2.4616 16 1 2.4858 1.7580 2.5150 17 6 3.4992 -0.1337 3.1962 18 6 4.2460 1.0834 3.7464 19 1 5.3319 1.0929 3.6522 20 6 3.6873 1.7442 5.0082 21 6 2.3232 1.1363 5.3408 22 6 4.6488 1.5100 6.1750 23 6 3.5313 3.2476 4.7703 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.4387 3.8186 -2.6663 32 1 2.6099 -0.4634 3.7332 33 1 4.0933 -0.9253 2.7398 34 1 2.4343 0.0653 5.5103 35 1 1.9253 1.6067 6.2400 36 1 1.6384 1.3035 4.5095 37 1 5.6204 1.9434 5.9377 38 1 4.2509 1.9811 7.0738 39 1 4.7603 0.4391 6.3446 40 1 2.8465 3.4147 3.9389 41 1 3.1336 3.7183 5.6694 42 1 4.5030 3.6806 4.5333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699770081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:10 Heat of formation + Delta-G solvation = -46.544317 kcal Electronic energy + Delta-G solvation = -19910.293115 eV Core-core repulsion = 17082.941836 eV Total energy + Delta-G solvation = -2827.351279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07189 -39.14871 -37.08848 -34.86312 -34.25444 -32.98470 -28.33077 -28.08238 -27.88995 -26.63517 -24.45133 -23.72156 -22.44661 -20.33889 -19.24951 -18.78737 -18.03412 -17.03158 -16.40862 -16.06821 -15.45890 -15.32455 -15.20670 -14.85066 -14.55065 -14.08339 -13.75151 -13.48734 -13.34326 -13.16745 -13.09366 -12.98048 -12.61479 -12.53632 -12.43138 -12.28957 -12.10905 -12.00350 -11.97491 -11.88139 -11.55929 -11.43677 -11.06268 -10.89988 -10.68823 -10.32461 -9.46000 -8.35418 -6.06336 1.34582 1.38495 1.50641 1.92447 2.27417 2.85322 2.99913 3.16100 3.73411 3.88505 3.94791 4.07841 4.17732 4.30155 4.34009 4.38826 4.43999 4.61106 4.65112 4.75827 4.82481 4.84824 4.87019 4.97312 5.01450 5.08049 5.10288 5.15190 5.16412 5.23704 5.27592 5.31000 5.41377 5.42317 5.47124 5.53762 5.60686 5.63221 6.19428 6.54306 7.17370 7.48706 8.09751 8.66344 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.006353 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.010254 B = 4406.347645 C = 4911.784306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.106 3.894 4 N -0.450 5.450 5 C -0.344 4.344 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.981 3.019 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.277 1.277 13 C 0.468 3.532 14 O -0.639 6.639 15 C -0.176 4.176 16 H 0.124 0.876 17 C -0.137 4.137 18 C -0.110 4.110 19 H 0.079 0.921 20 C -0.035 4.035 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.140 4.140 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.274 0.726 32 H 0.139 0.861 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.695 -4.589 12.031 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C -0.017 4.017 4 N -0.167 5.167 5 C -0.472 4.472 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.525 5.525 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.202 1.202 13 C 0.259 3.741 14 O -0.527 6.527 15 C -0.197 4.197 16 H 0.141 0.859 17 C -0.174 4.174 18 C -0.129 4.129 19 H 0.097 0.903 20 C -0.035 4.035 21 C -0.199 4.199 22 C -0.191 4.191 23 C -0.197 4.197 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.243 -4.423 11.886 14.605 hybrid contribution 0.781 0.268 -1.407 1.632 sum -6.462 -4.156 10.479 12.994 Atomic orbital electron populations 1.21615 0.93204 1.02406 1.02094 1.21852 0.97433 0.96480 1.01086 1.21729 0.79881 0.96858 1.03228 1.43722 1.06157 1.62324 1.04452 1.19395 1.07093 1.29376 0.91376 0.92263 1.26071 0.97171 0.92860 1.03809 1.69983 1.31105 1.17140 1.34282 0.85128 0.78715 0.78222 0.77464 1.18583 1.19862 1.20187 1.20449 0.87238 0.80704 0.85743 1.90441 1.16570 1.57868 1.87816 1.22093 1.01906 1.05100 0.90587 0.85857 1.23208 1.03487 0.89580 1.01153 1.22401 0.97293 1.00873 0.92373 0.90291 1.20109 0.96673 0.94608 0.92124 1.21991 0.94595 1.01401 1.01884 1.21807 0.98138 1.02177 0.97006 1.21855 1.00908 0.95205 1.01738 0.91073 0.91467 0.93354 0.92041 0.94122 0.89319 0.92262 0.91603 0.84371 0.90535 0.91121 0.90910 0.92787 0.93840 0.90688 0.91902 0.93876 0.90424 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.13 -4.72 6.19 30.60 0.19 -4.53 16 3 C 0.11 4.75 4.71 86.38 0.41 5.15 16 4 N -0.45 -24.22 2.56 -635.54 -1.63 -25.85 16 5 C -0.34 -20.43 8.98 84.04 0.75 -19.68 16 6 H 0.06 3.79 7.70 -2.91 -0.02 3.77 16 7 C 0.00 0.18 4.94 84.93 0.42 0.60 16 8 N -0.89 -48.90 11.31 21.66 0.24 -48.65 16 9 Si 0.98 43.49 29.60 68.60 2.03 45.52 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.47 24.68 7.37 87.66 0.65 25.33 16 14 O -0.64 -39.27 16.09 -3.07 -0.05 -39.32 16 15 C -0.18 -6.77 3.67 -11.54 -0.04 -6.81 16 16 H 0.12 4.38 5.45 -2.39 -0.01 4.37 16 17 C -0.14 -4.20 8.99 30.61 0.28 -3.93 16 18 C -0.11 -3.67 4.66 -10.78 -0.05 -3.72 16 19 H 0.08 3.15 7.64 -2.39 -0.02 3.13 16 20 C -0.04 -0.86 0.88 -52.18 -0.05 -0.91 16 21 C -0.14 -2.69 7.07 71.98 0.51 -2.18 16 22 C -0.13 -2.80 8.46 71.98 0.61 -2.19 16 23 C -0.14 -3.66 8.31 71.99 0.60 -3.06 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 2.11 7.40 -2.39 -0.02 2.09 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 4.40 5.34 -2.39 -0.01 4.39 16 30 H 0.06 2.43 6.24 -2.39 -0.01 2.41 16 31 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.14 3.15 5.85 -2.39 -0.01 3.13 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.07 1.18 6.98 -2.39 -0.02 1.17 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.08 7.07 -2.39 -0.02 1.06 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.24 7.29 -2.39 -0.02 1.22 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.82 329.83 6.56 -64.26 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.97 Total: 22.96 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.98 Total: -18.92 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.38 Total: -74.50 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.05 Total: -39.32 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.82 6.56 -64.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699770081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.716 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds