Wall clock time and date at job start Mon Mar 30 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47147 * 2 1 4 4 N 1.46497 * 109.46622 * 240.00300 * 2 1 3 5 5 C 1.46507 * 120.00157 * 239.88742 * 4 2 1 6 6 C 1.50701 * 109.47045 * 95.46584 * 5 4 2 7 7 H 1.08004 * 119.99981 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00226 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99805 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00343 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47379 * 120.00297 * 10 8 6 13 13 H 1.48497 * 109.47252 * 240.00637 * 10 8 6 14 14 C 1.34777 * 120.00388 * 59.89487 * 4 2 1 15 15 O 1.21283 * 119.99649 * 355.70623 * 14 4 2 16 16 C 1.50695 * 120.00212 * 175.71125 * 14 4 2 17 17 C 1.53004 * 115.54853 * 281.45655 * 16 14 4 18 18 C 1.52999 * 117.50459 * 67.13103 * 16 14 4 19 19 C 1.53001 * 117.49934 * 135.79028 * 16 14 4 20 20 C 1.52998 * 117.50142 * 359.97438 * 19 16 14 21 21 C 1.53003 * 117.49784 * 144.99503 * 19 16 14 22 22 H 1.09000 * 109.46927 * 173.26907 * 1 2 3 23 23 H 1.09002 * 109.47134 * 53.26564 * 1 2 3 24 24 H 1.09000 * 109.46686 * 293.27000 * 1 2 3 25 25 H 1.08996 * 109.46952 * 120.00568 * 2 1 3 26 26 H 1.09001 * 109.46756 * 60.00476 * 3 2 1 27 27 H 1.08998 * 109.46689 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47658 * 300.00136 * 3 2 1 29 29 H 1.08995 * 109.47082 * 215.46878 * 5 4 2 30 30 H 1.09002 * 109.47048 * 335.46891 * 5 4 2 31 31 H 0.96997 * 119.99679 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46971 * 74.98799 * 17 16 14 33 33 H 1.09000 * 109.47232 * 194.98960 * 17 16 14 34 34 H 1.08999 * 109.46929 * 314.98851 * 17 16 14 35 35 H 1.09003 * 117.50073 * 214.98143 * 18 16 14 36 36 H 1.09008 * 117.49328 * 359.97438 * 18 16 14 37 37 H 1.09002 * 109.46843 * 59.99971 * 20 19 16 38 38 H 1.09000 * 109.47337 * 180.02562 * 20 19 16 39 39 H 1.09000 * 109.46787 * 300.00556 * 20 19 16 40 40 H 1.08995 * 109.47101 * 59.99949 * 21 19 16 41 41 H 1.09005 * 109.47098 * 179.97438 * 21 19 16 42 42 H 1.08995 * 109.47173 * 299.99620 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8626 -1.8803 -1.0620 6 6 2.0055 -3.1169 -1.1491 7 1 0.9387 -3.0256 -1.2907 8 6 2.5834 -4.3646 -1.0490 9 7 3.8825 -4.4758 -0.8770 10 14 1.5212 -5.8974 -1.1576 11 1 0.1025 -5.5037 -1.3514 12 1 1.9655 -6.7272 -2.3062 13 1 1.6512 -6.6797 0.0978 14 6 1.6909 -0.2313 -2.4203 15 8 0.9295 0.7060 -2.5326 16 6 2.2708 -0.8825 -3.6494 17 6 3.7099 -0.4885 -3.9882 18 6 1.8399 -2.3176 -3.9587 19 6 1.3211 -1.1607 -4.8163 20 6 -0.1448 -0.7570 -4.6458 21 6 1.8832 -1.0236 -6.2327 22 1 -0.3633 -1.0206 -0.1205 23 1 -0.3633 0.6147 -0.8236 24 1 -0.3633 0.4060 0.9441 25 1 1.8934 -0.5139 0.8899 26 1 1.6768 1.9562 0.8901 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 3.6018 -1.8935 -1.8628 30 1 3.3712 -1.8580 -0.0982 31 1 4.2890 -5.3536 -0.8062 32 1 4.3941 -0.9848 -3.3000 33 1 3.9386 -0.7917 -5.0099 34 1 3.8220 0.5918 -3.8961 35 1 2.5815 -2.9810 -4.4038 36 1 1.1372 -2.7909 -3.2728 37 1 -0.2080 0.3173 -4.4729 38 1 -0.6996 -1.0134 -5.5484 39 1 -0.5711 -1.2878 -3.7946 40 1 2.7119 -1.7193 -6.3636 41 1 1.1012 -1.2501 -6.9574 42 1 2.2370 -0.0041 -6.3861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702141573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:32 Heat of formation + Delta-G solvation = -25.968769 kcal Electronic energy + Delta-G solvation = -20702.531233 eV Core-core repulsion = 17876.072177 eV Total energy + Delta-G solvation = -2826.459056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91588 -37.32508 -35.15565 -33.09697 -31.53180 -29.77367 -27.67509 -26.96656 -26.58499 -26.36024 -23.29830 -22.35657 -20.75998 -18.78567 -17.03869 -16.48266 -15.64937 -15.23184 -14.58929 -14.39453 -14.15671 -13.47735 -13.36557 -13.10219 -12.71104 -12.52489 -12.33492 -12.14637 -11.93230 -11.77453 -11.60298 -11.52801 -11.38233 -11.26045 -11.11772 -10.90230 -10.81424 -10.70649 -10.56444 -10.35396 -9.97678 -9.60838 -9.31632 -8.94689 -8.52940 -8.39691 -7.59099 -6.14239 -4.17890 3.21894 3.31231 3.34185 3.52928 3.89668 4.33530 4.41082 5.17558 5.18283 5.28579 5.39279 5.49814 5.56377 5.66428 5.75677 5.88778 5.99227 6.02344 6.10602 6.18343 6.21929 6.23656 6.30465 6.33074 6.38266 6.45379 6.48171 6.53884 6.64199 6.71030 6.77924 6.85744 6.87914 6.94077 7.05512 7.31924 7.69990 7.82258 8.13114 8.46613 8.85706 9.18573 9.46626 10.92569 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.010583 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.173370 B = 2644.995157 C = 3552.653124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 C -0.165 4.165 4 N -0.590 5.590 5 C 0.237 3.763 6 C -0.522 4.522 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.888 3.112 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.284 1.284 14 C 0.558 3.442 15 O -0.566 6.566 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.109 4.109 21 C -0.109 4.109 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 6.014 -4.348 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 C -0.223 4.223 4 N -0.321 5.321 5 C 0.117 3.883 6 C -0.560 4.560 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.530 5.530 10 Si 0.715 3.285 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.210 1.210 14 C 0.347 3.653 15 O -0.447 6.447 16 C -0.141 4.141 17 C -0.164 4.164 18 C -0.160 4.160 19 C -0.122 4.122 20 C -0.166 4.166 21 C -0.166 4.166 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.314 6.350 -4.343 8.033 hybrid contribution -0.309 -1.178 0.201 1.234 sum -2.623 5.172 -4.142 7.126 Atomic orbital electron populations 1.22166 0.95758 1.02493 1.01642 1.20825 0.94204 0.92256 0.88393 1.22175 1.00571 0.97060 1.02459 1.48315 1.50536 1.29240 1.03969 1.19491 0.89941 0.80672 0.98201 1.21445 0.94249 0.90450 1.49906 0.92223 1.24867 0.94865 0.98791 0.95124 1.69926 1.09522 1.24089 1.49450 0.86597 0.80822 0.83276 0.77772 1.19686 1.20834 1.21002 1.19370 0.80092 0.82200 0.83670 1.90489 1.37082 1.30246 1.86886 1.21259 0.96092 1.01670 0.95055 1.21257 0.92924 1.00660 1.01590 1.23509 1.02875 0.89296 1.00310 1.21706 0.94733 1.04278 0.91440 1.21315 0.92482 1.02423 1.00339 1.21311 1.00197 1.01261 0.93813 0.92571 0.90786 0.93312 0.90150 0.92746 0.93250 0.90941 0.93901 0.95136 0.92745 0.91345 0.91972 0.92991 0.89090 0.86591 0.91153 0.93457 0.92996 0.92539 0.92590 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.99 37.16 0.33 -2.59 16 2 C 0.15 2.77 3.28 -67.93 -0.22 2.55 16 3 C -0.16 -2.75 9.12 37.16 0.34 -2.41 16 4 N -0.59 -12.43 2.42 -167.47 -0.41 -12.84 16 5 C 0.24 5.55 4.80 -5.19 -0.02 5.53 16 6 C -0.52 -13.08 6.58 -34.44 -0.23 -13.31 16 7 H 0.06 1.55 7.19 -52.48 -0.38 1.17 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.07 13.29 55.43 0.74 -23.34 16 10 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.56 11.66 5.80 -10.99 -0.06 11.59 16 15 O -0.57 -12.34 11.24 5.55 0.06 -12.27 16 16 C -0.14 -2.62 1.36 -155.66 -0.21 -2.83 16 17 C -0.11 -1.82 9.33 37.16 0.35 -1.47 16 18 C -0.12 -2.38 7.48 -26.70 -0.20 -2.58 16 19 C -0.12 -2.08 2.70 -154.47 -0.42 -2.49 16 20 C -0.11 -1.85 8.50 37.16 0.32 -1.54 16 21 C -0.11 -1.52 8.43 37.16 0.31 -1.21 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.07 1.43 6.25 -51.93 -0.32 1.10 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.50 7.72 -51.93 -0.40 1.10 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.33 6.33 -51.93 -0.33 1.00 16 29 H 0.04 1.04 5.22 -51.93 -0.27 0.77 16 30 H 0.03 0.76 7.81 -51.93 -0.41 0.36 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.07 1.23 6.55 -51.93 -0.34 0.89 16 33 H 0.06 0.92 6.22 -51.93 -0.32 0.60 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.72 8.05 -51.93 -0.42 1.31 16 36 H 0.12 2.52 5.76 -51.92 -0.30 2.22 16 37 H 0.07 1.28 6.91 -51.93 -0.36 0.92 16 38 H 0.05 0.69 7.92 -51.93 -0.41 0.28 16 39 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 40 H 0.06 0.75 7.27 -51.93 -0.38 0.37 16 41 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -26.91 321.81 -6.72 -33.63 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.13 Total: 3.86 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 0.19 Total: -9.16 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.33 Total: -36.18 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.06 Total: -12.27 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.91 -6.72 -33.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702141573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.660 kcal (2) G-P(sol) polarization free energy of solvation -26.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds