Wall clock time and date at job start Mon Mar 30 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47147 * 2 1 4 4 N 1.46497 * 109.46622 * 240.00300 * 2 1 3 5 5 C 1.46507 * 120.00157 * 239.88742 * 4 2 1 6 6 C 1.50701 * 109.47045 * 95.46584 * 5 4 2 7 7 H 1.08004 * 119.99981 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00226 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99805 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00343 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47379 * 120.00297 * 10 8 6 13 13 H 1.48497 * 109.47252 * 240.00637 * 10 8 6 14 14 C 1.34777 * 120.00388 * 59.89487 * 4 2 1 15 15 O 1.21283 * 119.99649 * 355.70623 * 14 4 2 16 16 C 1.50695 * 120.00212 * 175.71125 * 14 4 2 17 17 C 1.53004 * 115.54853 * 281.45655 * 16 14 4 18 18 C 1.52999 * 117.50459 * 67.13103 * 16 14 4 19 19 C 1.53001 * 117.49934 * 135.79028 * 16 14 4 20 20 C 1.52998 * 117.50142 * 359.97438 * 19 16 14 21 21 C 1.53003 * 117.49784 * 144.99503 * 19 16 14 22 22 H 1.09000 * 109.46927 * 173.26907 * 1 2 3 23 23 H 1.09002 * 109.47134 * 53.26564 * 1 2 3 24 24 H 1.09000 * 109.46686 * 293.27000 * 1 2 3 25 25 H 1.08996 * 109.46952 * 120.00568 * 2 1 3 26 26 H 1.09001 * 109.46756 * 60.00476 * 3 2 1 27 27 H 1.08998 * 109.46689 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47658 * 300.00136 * 3 2 1 29 29 H 1.08995 * 109.47082 * 215.46878 * 5 4 2 30 30 H 1.09002 * 109.47048 * 335.46891 * 5 4 2 31 31 H 0.96997 * 119.99679 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46971 * 74.98799 * 17 16 14 33 33 H 1.09000 * 109.47232 * 194.98960 * 17 16 14 34 34 H 1.08999 * 109.46929 * 314.98851 * 17 16 14 35 35 H 1.09003 * 117.50073 * 214.98143 * 18 16 14 36 36 H 1.09008 * 117.49328 * 359.97438 * 18 16 14 37 37 H 1.09002 * 109.46843 * 59.99971 * 20 19 16 38 38 H 1.09000 * 109.47337 * 180.02562 * 20 19 16 39 39 H 1.09000 * 109.46787 * 300.00556 * 20 19 16 40 40 H 1.08995 * 109.47101 * 59.99949 * 21 19 16 41 41 H 1.09005 * 109.47098 * 179.97438 * 21 19 16 42 42 H 1.08995 * 109.47173 * 299.99620 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8626 -1.8803 -1.0620 6 6 2.0055 -3.1169 -1.1491 7 1 0.9387 -3.0256 -1.2907 8 6 2.5834 -4.3646 -1.0490 9 7 3.8825 -4.4758 -0.8770 10 14 1.5212 -5.8974 -1.1576 11 1 0.1025 -5.5037 -1.3514 12 1 1.9655 -6.7272 -2.3062 13 1 1.6512 -6.6797 0.0978 14 6 1.6909 -0.2313 -2.4203 15 8 0.9295 0.7060 -2.5326 16 6 2.2708 -0.8825 -3.6494 17 6 3.7099 -0.4885 -3.9882 18 6 1.8399 -2.3176 -3.9587 19 6 1.3211 -1.1607 -4.8163 20 6 -0.1448 -0.7570 -4.6458 21 6 1.8832 -1.0236 -6.2327 22 1 -0.3633 -1.0206 -0.1205 23 1 -0.3633 0.6147 -0.8236 24 1 -0.3633 0.4060 0.9441 25 1 1.8934 -0.5139 0.8899 26 1 1.6768 1.9562 0.8901 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 3.6018 -1.8935 -1.8628 30 1 3.3712 -1.8580 -0.0982 31 1 4.2890 -5.3536 -0.8062 32 1 4.3941 -0.9848 -3.3000 33 1 3.9386 -0.7917 -5.0099 34 1 3.8220 0.5918 -3.8961 35 1 2.5815 -2.9810 -4.4038 36 1 1.1372 -2.7909 -3.2728 37 1 -0.2080 0.3173 -4.4729 38 1 -0.6996 -1.0134 -5.5484 39 1 -0.5711 -1.2878 -3.7946 40 1 2.7119 -1.7193 -6.3636 41 1 1.1012 -1.2501 -6.9574 42 1 2.2370 -0.0041 -6.3861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702141573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:31 Heat of formation + Delta-G solvation = -38.972673 kcal Electronic energy + Delta-G solvation = -20703.095125 eV Core-core repulsion = 17876.072177 eV Total energy + Delta-G solvation = -2827.022948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49380 -38.81768 -36.85853 -34.94916 -33.20914 -31.19741 -28.95471 -28.82725 -28.01984 -27.76229 -25.06790 -24.06172 -22.28685 -20.24950 -18.74403 -18.38560 -17.26970 -16.84961 -16.25066 -16.10325 -15.64563 -14.97993 -14.76337 -14.50494 -14.40025 -13.97347 -13.85325 -13.77995 -13.47827 -13.21855 -13.06034 -13.02766 -12.82362 -12.77690 -12.65682 -12.62094 -12.49681 -12.19821 -12.10573 -11.91810 -11.69251 -11.51367 -10.79661 -10.54594 -10.38029 -9.98640 -9.32980 -8.13992 -6.23031 1.38282 1.42994 1.51493 1.88123 2.30655 2.45977 2.90707 3.17226 3.69042 3.87243 3.94945 4.06639 4.21508 4.26198 4.29790 4.40684 4.66873 4.73651 4.77852 4.82875 4.85167 4.90475 4.95523 4.99499 5.00574 5.05632 5.09792 5.10475 5.17292 5.21198 5.29485 5.30951 5.36314 5.41295 5.47514 5.58743 5.74773 6.02875 6.16340 6.66265 6.92737 7.40949 7.55349 8.91920 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.010583 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.173370 B = 2644.995157 C = 3552.653124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 C -0.152 4.152 4 N -0.596 5.596 5 C 0.253 3.747 6 C -0.517 4.517 7 H 0.046 0.954 8 C 0.028 3.972 9 N -0.919 5.919 10 Si 0.941 3.059 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.282 1.282 14 C 0.553 3.447 15 O -0.577 6.577 16 C -0.155 4.155 17 C -0.100 4.100 18 C -0.133 4.133 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.106 4.106 22 H 0.034 0.966 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 6.420 -5.344 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.031 3.969 3 C -0.210 4.210 4 N -0.326 5.326 5 C 0.132 3.868 6 C -0.555 4.555 7 H 0.065 0.935 8 C -0.172 4.172 9 N -0.559 5.559 10 Si 0.768 3.232 11 H -0.198 1.198 12 H -0.203 1.203 13 H -0.208 1.208 14 C 0.342 3.658 15 O -0.459 6.459 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.170 4.170 19 C -0.103 4.103 20 C -0.162 4.162 21 C -0.163 4.163 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.685 6.768 -5.337 9.028 hybrid contribution -0.240 -1.264 0.546 1.398 sum -2.925 5.503 -4.791 7.861 Atomic orbital electron populations 1.22054 0.95102 1.01022 1.02770 1.21092 0.94788 0.93438 0.87570 1.22054 1.00504 0.95369 1.03068 1.48341 1.50399 1.28776 1.05082 1.19133 0.89742 0.81240 0.96698 1.21475 0.93614 0.91259 1.49203 0.93550 1.25437 0.95722 1.01074 0.94992 1.70005 1.10691 1.24710 1.50500 0.85754 0.79302 0.80387 0.77771 1.19827 1.20258 1.20835 1.19728 0.79857 0.82103 0.84098 1.90476 1.37516 1.30782 1.87095 1.21439 0.97758 1.01217 0.95396 1.21226 0.91142 1.00826 1.02562 1.23300 1.02878 0.89678 1.01187 1.21896 0.94442 1.01281 0.92698 1.21280 0.92857 1.01288 1.00769 1.21348 1.01091 1.02249 0.91587 0.94678 0.92147 0.90163 0.90221 0.89770 0.93210 0.92566 0.94755 0.96974 0.92610 0.92944 0.89540 0.92412 0.88931 0.89543 0.92188 0.90527 0.95385 0.91692 0.90551 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 8.99 71.98 0.65 -4.76 16 2 C 0.13 5.03 3.28 44.99 0.15 5.18 16 3 C -0.15 -4.91 9.12 71.98 0.66 -4.25 16 4 N -0.60 -25.48 2.42 -802.14 -1.94 -27.42 16 5 C 0.25 12.13 4.80 85.63 0.41 12.55 16 6 C -0.52 -26.42 6.58 25.60 0.17 -26.25 16 7 H 0.05 2.47 7.19 -2.91 -0.02 2.45 16 8 C 0.03 1.43 5.46 84.65 0.46 1.89 16 9 N -0.92 -50.07 13.29 21.45 0.28 -49.78 16 10 Si 0.94 41.84 29.54 68.60 2.03 43.87 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.55 23.23 5.80 87.66 0.51 23.74 16 15 O -0.58 -25.17 11.24 -3.04 -0.03 -25.20 16 16 C -0.16 -5.84 1.36 -52.93 -0.07 -5.91 16 17 C -0.10 -3.30 9.33 71.98 0.67 -2.63 16 18 C -0.13 -5.15 7.48 30.62 0.23 -4.92 16 19 C -0.10 -3.37 2.70 -52.16 -0.14 -3.52 16 20 C -0.10 -3.47 8.50 71.98 0.61 -2.86 16 21 C -0.11 -2.62 8.43 71.98 0.61 -2.01 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 2.31 6.25 -2.39 -0.01 2.30 16 24 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.08 2.97 7.72 -2.39 -0.02 2.95 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.01 6.33 -2.39 -0.02 1.99 16 29 H 0.03 1.72 5.22 -2.39 -0.01 1.70 16 30 H 0.01 0.63 7.81 -2.39 -0.02 0.61 16 31 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.05 1.87 6.55 -2.39 -0.02 1.86 16 33 H 0.09 2.37 6.22 -2.39 -0.01 2.36 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 3.48 8.05 -2.39 -0.02 3.46 16 36 H 0.09 3.86 5.76 -2.38 -0.01 3.85 16 37 H 0.06 2.12 6.91 -2.39 -0.02 2.10 16 38 H 0.08 2.05 7.92 -2.39 -0.02 2.03 16 39 H 0.03 1.03 7.90 -2.39 -0.02 1.01 16 40 H 0.06 1.51 7.27 -2.39 -0.02 1.50 16 41 H 0.08 1.60 7.93 -2.38 -0.02 1.59 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -57.56 321.81 6.22 -51.33 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.98 Total: 20.95 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.91 Total: -13.75 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -1.66 Total: -77.20 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.03 Total: -25.20 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -57.56 6.22 -51.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702141573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.360 kcal (2) G-P(sol) polarization free energy of solvation -57.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds