Wall clock time and date at job start Mon Mar 30 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52044 * 1 3 3 H 1.10839 * 107.64202 * 2 1 4 4 C 1.52703 * 112.39650 * 117.91915 * 2 1 3 5 5 C 1.51232 * 113.30327 * 53.68316 * 4 2 1 6 6 C 1.51683 * 114.36019 * 63.91461 * 5 4 2 7 7 C 1.52959 * 110.78930 * 283.49261 * 6 5 4 8 8 N 1.46824 * 108.67262 * 86.53649 * 7 6 5 9 9 C 1.47160 * 118.37398 * 126.56100 * 8 7 6 10 10 C 1.52994 * 109.46971 * 272.42450 * 9 8 7 11 11 C 1.53004 * 109.46925 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.46817 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00698 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99971 * 179.72721 * 13 12 11 16 16 N 1.31507 * 120.00344 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99478 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47209 * 90.00281 * 17 15 13 19 19 H 1.48504 * 109.47161 * 209.99975 * 17 15 13 20 20 H 1.48497 * 109.47292 * 329.99830 * 17 15 13 21 21 C 1.33386 * 123.34040 * 309.12300 * 8 7 6 22 22 O 1.22057 * 118.14222 * 156.86722 * 21 8 7 23 23 H 1.09011 * 109.47034 * 184.20215 * 1 2 3 24 24 H 1.08992 * 109.47505 * 304.20180 * 1 2 3 25 25 H 1.09004 * 109.47056 * 64.20917 * 1 2 3 26 26 H 1.09447 * 108.89014 * 175.20413 * 4 2 1 27 27 H 1.09515 * 108.73993 * 292.47854 * 4 2 1 28 28 H 1.09756 * 107.95671 * 183.66403 * 5 4 2 29 29 H 1.08640 * 110.30435 * 300.44318 * 5 4 2 30 30 H 1.09045 * 109.18599 * 43.78827 * 6 5 4 31 31 H 1.09004 * 109.29726 * 163.05099 * 6 5 4 32 32 H 1.08427 * 110.47911 * 324.06248 * 7 6 5 33 33 H 1.09652 * 108.80643 * 205.07221 * 7 6 5 34 34 H 1.08999 * 109.46504 * 152.43049 * 9 8 7 35 35 H 1.08994 * 109.47150 * 32.43036 * 9 8 7 36 36 H 1.08999 * 109.47018 * 60.00913 * 10 9 8 37 37 H 1.08994 * 109.47661 * 300.00272 * 10 9 8 38 38 H 1.09001 * 109.47250 * 60.00477 * 11 10 9 39 39 H 1.08998 * 109.47437 * 300.00362 * 11 10 9 40 40 H 1.09001 * 109.46712 * 60.00099 * 12 11 10 41 41 H 1.08998 * 109.47225 * 300.00444 * 12 11 10 42 42 H 0.97000 * 120.00254 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5204 0.0000 0.0000 3 1 1.8564 1.0563 0.0000 4 6 2.1023 -0.6611 1.2475 5 6 1.5697 -2.0557 1.4892 6 6 1.9296 -3.0587 0.4098 7 6 1.0602 -2.8551 -0.8322 8 7 1.6916 -1.8420 -1.6870 9 6 1.9474 -2.1775 -3.0968 10 6 3.3122 -2.8581 -3.2195 11 6 3.5785 -3.2064 -4.6854 12 6 4.9431 -3.8875 -4.8080 13 6 5.2056 -4.2299 -6.2518 14 1 4.4724 -3.9866 -7.0065 15 6 6.3841 -4.8495 -6.6102 16 7 6.6130 -5.1488 -7.8701 17 14 7.6550 -5.2649 -5.3057 18 1 7.3911 -6.6258 -4.7731 19 1 9.0126 -5.2229 -5.9061 20 1 7.5716 -4.2762 -4.2008 21 6 2.0903 -0.6504 -1.2395 22 8 2.9576 -0.0614 -1.8646 23 1 -0.3634 -1.0250 0.0753 24 1 -0.3634 0.5776 0.8499 25 1 -0.3633 0.4471 -0.9253 26 1 3.1913 -0.7069 1.1491 27 1 1.8697 -0.0374 2.1172 28 1 1.9911 -2.4197 2.4350 29 1 0.4900 -2.0317 1.6077 30 1 2.9781 -2.9320 0.1381 31 1 1.7798 -4.0685 0.7919 32 1 0.0557 -2.5622 -0.5482 33 1 1.0037 -3.8015 -1.3831 34 1 1.9411 -1.2658 -3.6941 35 1 1.1710 -2.8528 -3.4563 36 1 3.3185 -3.7698 -2.6222 37 1 4.0886 -2.1829 -2.8600 38 1 3.5723 -2.2944 -5.2824 39 1 2.8021 -3.8815 -5.0453 40 1 4.9488 -4.7995 -4.2110 41 1 5.7197 -3.2128 -4.4479 42 1 7.4420 -5.5849 -8.1222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703632285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:30 Heat of formation + Delta-G solvation = -66.371814 kcal Electronic energy + Delta-G solvation = -19287.328457 eV Core-core repulsion = 16459.117393 eV Total energy + Delta-G solvation = -2828.211064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54459 -36.77499 -36.03140 -34.15394 -32.47232 -32.02305 -29.49413 -28.17686 -25.60555 -24.90169 -23.73427 -21.55776 -20.48954 -19.95024 -18.61858 -16.86978 -16.66282 -16.60926 -15.42131 -14.72097 -14.66267 -14.23612 -14.12558 -13.91982 -13.81422 -13.38522 -12.73596 -12.64302 -12.51037 -12.25435 -11.99456 -11.91510 -11.72123 -11.66658 -11.05973 -11.00359 -10.85930 -10.79628 -10.59365 -10.45016 -9.87454 -9.70041 -9.63677 -9.48029 -9.11116 -8.49835 -8.47574 -5.98446 -3.95548 2.58584 3.01912 3.34892 3.42231 3.48316 4.28839 4.37281 4.43679 4.51289 4.59270 4.81245 4.95530 5.09153 5.18144 5.20782 5.26012 5.35750 5.38890 5.44575 5.54098 5.59494 5.65942 5.70434 5.75906 5.78734 5.84996 5.87727 6.03470 6.10014 6.14983 6.45637 6.57698 6.72488 6.84968 7.03764 7.40471 7.51712 7.55709 7.87188 8.19354 8.61251 9.07076 9.64908 11.15249 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034688 B = 0.004210 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.996498 B = 6649.418007 C = 6861.659041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.142 4.142 7 C 0.113 3.887 8 N -0.611 5.611 9 C 0.114 3.886 10 C -0.134 4.134 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.520 3.480 22 O -0.543 6.543 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.009 0.991 41 H 0.015 0.985 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 6.671 21.429 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.113 0.887 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.180 4.180 7 C -0.010 4.010 8 N -0.344 5.344 9 C -0.008 4.008 10 C -0.172 4.172 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 C 0.308 3.692 22 O -0.421 6.421 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.033 0.967 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.721 6.922 21.004 26.566 hybrid contribution 0.817 -0.401 0.591 1.085 sum -13.903 6.521 21.595 26.498 Atomic orbital electron populations 1.21635 0.93272 1.02838 1.02427 1.21412 0.97069 1.01003 0.93110 0.88670 1.21176 1.00967 0.96056 0.96393 1.21020 1.01563 0.94391 0.98825 1.21799 1.01192 0.99675 0.95376 1.21717 0.95915 0.91754 0.91600 1.47810 1.60497 1.14684 1.11438 1.21834 0.97870 1.00748 0.80317 1.22016 0.96373 0.99726 0.99111 1.21389 0.99407 1.00133 0.92839 1.19560 0.92925 0.95095 0.97496 1.21197 1.03980 1.38348 0.92108 0.91084 1.25039 0.98064 0.95317 0.95172 1.69919 1.25739 1.42605 1.16289 0.86773 0.80912 0.79122 0.82478 1.20370 1.21415 1.19009 1.20606 0.81495 0.80965 0.86172 1.90952 1.29031 1.64295 1.57801 0.91586 0.91656 0.92190 0.91534 0.90980 0.92045 0.91526 0.90914 0.90391 0.90895 0.89804 0.90383 0.90751 0.92760 0.91672 0.92726 0.92967 0.97293 0.96714 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.80 36.67 0.32 -0.73 16 2 C -0.10 -1.02 2.55 -92.20 -0.23 -1.25 16 3 H 0.10 0.96 8.19 -50.87 -0.42 0.55 16 4 C -0.11 -0.88 5.14 -27.77 -0.14 -1.02 16 5 C -0.12 -0.83 4.96 -28.29 -0.14 -0.97 16 6 C -0.14 -1.18 5.50 -27.42 -0.15 -1.33 16 7 C 0.11 0.99 5.73 -3.89 -0.02 0.97 16 8 N -0.61 -7.57 2.58 -172.92 -0.45 -8.01 16 9 C 0.11 1.63 5.02 -3.68 -0.02 1.61 16 10 C -0.13 -2.32 5.49 -26.73 -0.15 -2.47 16 11 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.43 9.66 -34.44 -0.33 -15.76 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.06 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.91 -28.81 13.96 55.43 0.77 -28.03 16 17 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.27 -6.67 6.53 56.52 0.37 -6.30 16 21 C 0.52 7.19 5.98 -11.39 -0.07 7.12 16 22 O -0.54 -10.16 16.15 4.87 0.08 -10.08 16 23 H 0.07 0.43 4.27 -51.92 -0.22 0.20 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.65 8.13 -51.68 -0.42 0.23 16 27 H 0.07 0.46 8.18 -51.64 -0.42 0.03 16 28 H 0.06 0.38 8.20 -51.50 -0.42 -0.04 16 29 H 0.07 0.37 6.68 -52.13 -0.35 0.03 16 30 H 0.07 0.79 7.98 -51.90 -0.41 0.38 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.50 5.60 -52.25 -0.29 0.20 16 33 H 0.08 0.69 7.83 -51.56 -0.40 0.29 16 34 H 0.08 1.23 7.60 -51.93 -0.39 0.83 16 35 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.28 7.70 -51.93 -0.40 0.88 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.01 0.22 7.58 -51.93 -0.39 -0.18 16 41 H 0.01 0.38 7.18 -51.93 -0.37 0.01 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -34.43 322.66 -8.14 -42.58 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -7.46 Total: -4.66 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.28 Total: -14.62 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.33 Total: -36.05 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.43 -8.14 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703632285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.796 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds