Wall clock time and date at job start Mon Mar 30 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52044 * 1 3 3 H 1.10839 * 107.64202 * 2 1 4 4 C 1.52703 * 112.39650 * 117.91915 * 2 1 3 5 5 C 1.51232 * 113.30327 * 53.68316 * 4 2 1 6 6 C 1.51683 * 114.36019 * 63.91461 * 5 4 2 7 7 C 1.52959 * 110.78930 * 283.49261 * 6 5 4 8 8 N 1.46824 * 108.67262 * 86.53649 * 7 6 5 9 9 C 1.47160 * 118.37398 * 126.56100 * 8 7 6 10 10 C 1.52994 * 109.46971 * 272.42450 * 9 8 7 11 11 C 1.53004 * 109.46925 * 180.02562 * 10 9 8 12 12 C 1.53007 * 109.47114 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.46817 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00698 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99971 * 179.72721 * 13 12 11 16 16 N 1.31507 * 120.00344 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99478 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47209 * 90.00281 * 17 15 13 19 19 H 1.48504 * 109.47161 * 209.99975 * 17 15 13 20 20 H 1.48497 * 109.47292 * 329.99830 * 17 15 13 21 21 C 1.33386 * 123.34040 * 309.12300 * 8 7 6 22 22 O 1.22057 * 118.14222 * 156.86722 * 21 8 7 23 23 H 1.09011 * 109.47034 * 184.20215 * 1 2 3 24 24 H 1.08992 * 109.47505 * 304.20180 * 1 2 3 25 25 H 1.09004 * 109.47056 * 64.20917 * 1 2 3 26 26 H 1.09447 * 108.89014 * 175.20413 * 4 2 1 27 27 H 1.09515 * 108.73993 * 292.47854 * 4 2 1 28 28 H 1.09756 * 107.95671 * 183.66403 * 5 4 2 29 29 H 1.08640 * 110.30435 * 300.44318 * 5 4 2 30 30 H 1.09045 * 109.18599 * 43.78827 * 6 5 4 31 31 H 1.09004 * 109.29726 * 163.05099 * 6 5 4 32 32 H 1.08427 * 110.47911 * 324.06248 * 7 6 5 33 33 H 1.09652 * 108.80643 * 205.07221 * 7 6 5 34 34 H 1.08999 * 109.46504 * 152.43049 * 9 8 7 35 35 H 1.08994 * 109.47150 * 32.43036 * 9 8 7 36 36 H 1.08999 * 109.47018 * 60.00913 * 10 9 8 37 37 H 1.08994 * 109.47661 * 300.00272 * 10 9 8 38 38 H 1.09001 * 109.47250 * 60.00477 * 11 10 9 39 39 H 1.08998 * 109.47437 * 300.00362 * 11 10 9 40 40 H 1.09001 * 109.46712 * 60.00099 * 12 11 10 41 41 H 1.08998 * 109.47225 * 300.00444 * 12 11 10 42 42 H 0.97000 * 120.00254 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5204 0.0000 0.0000 3 1 1.8564 1.0563 0.0000 4 6 2.1023 -0.6611 1.2475 5 6 1.5697 -2.0557 1.4892 6 6 1.9296 -3.0587 0.4098 7 6 1.0602 -2.8551 -0.8322 8 7 1.6916 -1.8420 -1.6870 9 6 1.9474 -2.1775 -3.0968 10 6 3.3122 -2.8581 -3.2195 11 6 3.5785 -3.2064 -4.6854 12 6 4.9431 -3.8875 -4.8080 13 6 5.2056 -4.2299 -6.2518 14 1 4.4724 -3.9866 -7.0065 15 6 6.3841 -4.8495 -6.6102 16 7 6.6130 -5.1488 -7.8701 17 14 7.6550 -5.2649 -5.3057 18 1 7.3911 -6.6258 -4.7731 19 1 9.0126 -5.2229 -5.9061 20 1 7.5716 -4.2762 -4.2008 21 6 2.0903 -0.6504 -1.2395 22 8 2.9576 -0.0614 -1.8646 23 1 -0.3634 -1.0250 0.0753 24 1 -0.3634 0.5776 0.8499 25 1 -0.3633 0.4471 -0.9253 26 1 3.1913 -0.7069 1.1491 27 1 1.8697 -0.0374 2.1172 28 1 1.9911 -2.4197 2.4350 29 1 0.4900 -2.0317 1.6077 30 1 2.9781 -2.9320 0.1381 31 1 1.7798 -4.0685 0.7919 32 1 0.0557 -2.5622 -0.5482 33 1 1.0037 -3.8015 -1.3831 34 1 1.9411 -1.2658 -3.6941 35 1 1.1710 -2.8528 -3.4563 36 1 3.3185 -3.7698 -2.6222 37 1 4.0886 -2.1829 -2.8600 38 1 3.5723 -2.2944 -5.2824 39 1 2.8021 -3.8815 -5.0453 40 1 4.9488 -4.7995 -4.2110 41 1 5.7197 -3.2128 -4.4479 42 1 7.4420 -5.5849 -8.1222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703632285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:30 Heat of formation + Delta-G solvation = -87.857892 kcal Electronic energy + Delta-G solvation = -19288.260164 eV Core-core repulsion = 16459.117393 eV Total energy + Delta-G solvation = -2829.142770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50819 -37.68584 -37.31563 -35.73661 -34.19048 -33.08529 -31.03021 -29.10431 -27.01010 -25.73365 -24.85958 -23.09161 -21.84769 -21.09404 -19.54864 -18.89821 -17.76433 -17.58767 -16.44547 -16.28735 -16.15262 -15.49769 -14.96097 -14.87015 -14.74960 -14.63900 -14.20403 -13.97586 -13.76707 -13.65451 -13.24898 -12.93473 -12.78304 -12.62836 -12.50367 -12.36453 -12.07009 -11.79560 -11.67864 -11.55542 -11.44791 -11.36688 -11.34907 -11.21832 -10.79248 -10.65342 -9.59131 -8.32587 -6.36467 1.30821 1.34263 1.46682 1.54666 2.05515 2.33342 3.02288 3.47470 3.74106 3.83001 3.93533 4.03104 4.08491 4.15830 4.31022 4.39922 4.45961 4.52958 4.58236 4.62111 4.68643 4.75579 4.81164 4.91115 4.98792 5.04022 5.07484 5.12767 5.14784 5.18331 5.22369 5.25505 5.29692 5.49452 5.55392 5.58550 5.61492 5.64945 6.26072 6.55220 6.70999 7.15598 7.28271 8.84380 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034688 B = 0.004210 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.996498 B = 6649.418007 C = 6861.659041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.084 0.916 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.142 4.142 7 C 0.105 3.895 8 N -0.607 5.607 9 C 0.118 3.882 10 C -0.118 4.118 11 C -0.092 4.092 12 C -0.011 4.011 13 C -0.535 4.535 14 H 0.033 0.967 15 C 0.004 3.996 16 N -0.950 5.950 17 Si 0.951 3.049 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.257 1.257 21 C 0.511 3.489 22 O -0.606 6.606 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.005 0.995 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 5.670 24.724 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.102 0.898 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.180 4.180 7 C -0.016 4.016 8 N -0.338 5.338 9 C -0.005 4.005 10 C -0.157 4.157 11 C -0.130 4.130 12 C -0.048 4.048 13 C -0.573 4.573 14 H 0.052 0.948 15 C -0.193 4.193 16 N -0.591 5.591 17 Si 0.774 3.226 18 H -0.184 1.184 19 H -0.207 1.207 20 H -0.181 1.181 21 C 0.301 3.699 22 O -0.488 6.488 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.024 0.976 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.409 5.896 24.327 29.930 hybrid contribution 1.296 -0.083 -0.520 1.399 sum -15.113 5.813 23.807 28.792 Atomic orbital electron populations 1.21637 0.90786 1.04126 1.03028 1.21428 0.98877 0.99974 0.91621 0.89781 1.21199 0.99322 0.97579 0.96273 1.21025 1.03097 0.92850 0.98665 1.21814 0.99036 1.01447 0.95679 1.22082 0.97089 0.91116 0.91318 1.47920 1.59814 1.15066 1.10985 1.21672 0.96880 1.00099 0.81819 1.21814 0.97483 0.99928 0.96489 1.21259 0.97383 0.99223 0.95180 1.19521 0.95101 0.95667 0.94554 1.21534 1.03534 1.38458 0.93756 0.94845 1.26023 1.00510 0.95078 0.97642 1.70061 1.26789 1.43619 1.18644 0.85642 0.77772 0.79736 0.79403 1.18387 1.20656 1.18110 1.21486 0.80598 0.80989 0.86801 1.90921 1.31994 1.65882 1.60048 0.90133 0.89271 0.93157 0.94141 0.88498 0.90863 0.89033 0.94197 0.88254 0.87914 0.88755 0.92495 0.87650 0.91213 0.94606 0.94260 0.91841 0.96052 0.97640 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.80 71.67 0.63 -0.95 16 2 C -0.10 -1.77 2.55 -11.82 -0.03 -1.80 16 3 H 0.08 1.69 8.19 -1.39 -0.01 1.68 16 4 C -0.11 -1.50 5.14 29.92 0.15 -1.35 16 5 C -0.12 -1.22 4.96 29.58 0.15 -1.07 16 6 C -0.14 -1.93 5.50 30.15 0.17 -1.77 16 7 C 0.10 1.49 5.73 86.30 0.49 1.99 16 8 N -0.61 -14.28 2.58 -819.85 -2.11 -16.39 16 9 C 0.12 3.30 5.02 86.25 0.43 3.73 16 10 C -0.12 -4.10 5.49 30.59 0.17 -3.93 16 11 C -0.09 -3.86 5.15 30.60 0.16 -3.70 16 12 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 13 C -0.53 -32.65 9.66 25.60 0.25 -32.41 16 14 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 15 C 0.00 0.26 5.47 84.66 0.46 0.72 16 16 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 17 Si 0.95 46.60 27.47 68.60 1.88 48.48 16 18 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.26 -12.15 6.53 99.48 0.65 -11.50 16 21 C 0.51 14.18 5.98 88.01 0.53 14.71 16 22 O -0.61 -23.90 16.15 -5.50 -0.09 -23.99 16 23 H 0.08 0.67 4.27 -2.38 -0.01 0.66 16 24 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.04 0.78 8.13 -2.15 -0.02 0.76 16 27 H 0.10 0.92 8.18 -2.11 -0.02 0.90 16 28 H 0.07 0.62 8.20 -1.98 -0.02 0.61 16 29 H 0.09 0.54 6.68 -2.58 -0.02 0.52 16 30 H 0.04 0.82 7.98 -2.36 -0.02 0.80 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.10 0.90 5.60 -2.69 -0.02 0.89 16 33 H 0.09 1.19 7.83 -2.04 -0.02 1.17 16 34 H 0.06 1.84 7.60 -2.39 -0.02 1.82 16 35 H 0.11 2.30 7.96 -2.39 -0.02 2.28 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.44 7.70 -2.39 -0.02 1.42 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.02 1.02 7.58 -2.39 -0.02 1.00 16 41 H 0.01 0.27 7.18 -2.39 -0.02 0.26 16 42 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -78.61 322.66 4.58 -74.03 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.92 Total: 5.50 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.68 Total: -26.27 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.81 Total: -77.75 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.09 Total: -23.99 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.48 kcal Total: -78.61 4.58 -74.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703632285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.831 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds