Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 C 1.53000 * 109.47353 * 120.00296 * 2 1 3 5 5 N 1.46499 * 109.47187 * 65.00063 * 4 2 1 6 6 C 1.46496 * 119.99944 * 83.39944 * 5 4 2 7 7 C 1.50694 * 109.47297 * 83.72960 * 6 5 4 8 8 H 1.08004 * 119.99990 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00053 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99807 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47297 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46914 * 120.00328 * 11 9 7 14 14 H 1.48504 * 109.46765 * 239.99814 * 11 9 7 15 15 C 1.34776 * 119.99666 * 263.39991 * 5 4 2 16 16 O 1.21283 * 120.00239 * 3.91941 * 15 5 4 17 17 C 1.50703 * 119.99526 * 183.92067 * 15 5 4 18 18 C 1.52998 * 115.55202 * 288.29939 * 17 15 5 19 19 C 1.52999 * 117.50231 * 73.97453 * 17 15 5 20 20 C 1.53004 * 117.49579 * 142.63356 * 17 15 5 21 21 H 1.08997 * 117.49865 * 359.97438 * 20 17 15 22 22 C 1.53001 * 117.49814 * 145.02121 * 20 17 15 23 23 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46974 * 299.99564 * 1 2 3 25 25 H 1.08995 * 109.46939 * 60.00069 * 1 2 3 26 26 H 1.09002 * 109.46974 * 240.00436 * 2 1 3 27 27 H 1.09000 * 109.47113 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47334 * 300.00273 * 3 2 1 29 29 H 1.09002 * 109.46865 * 60.00369 * 3 2 1 30 30 H 1.08999 * 109.47208 * 304.99726 * 4 2 1 31 31 H 1.08998 * 109.47412 * 185.00223 * 4 2 1 32 32 H 1.09003 * 109.47025 * 203.72547 * 6 5 4 33 33 H 1.08997 * 109.47335 * 323.72543 * 6 5 4 34 34 H 0.97001 * 120.00493 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.47167 * 47.12219 * 18 17 15 36 36 H 1.09002 * 109.47348 * 167.12042 * 18 17 15 37 37 H 1.09000 * 109.47201 * 287.12328 * 18 17 15 38 38 H 1.08993 * 117.50236 * 214.97421 * 19 17 15 39 39 H 1.09010 * 117.49572 * 359.97438 * 19 17 15 40 40 H 1.09001 * 109.47125 * 59.99563 * 22 20 17 41 41 H 1.08999 * 109.47250 * 180.02562 * 22 20 17 42 42 H 1.09004 * 109.46828 * 299.99602 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 2.4705 -3.0862 0.4367 7 6 3.6143 -3.5573 1.2972 8 1 3.7216 -3.1835 2.3048 9 6 4.5239 -4.4654 0.7983 10 7 4.3937 -4.9202 -0.4287 11 14 5.9423 -5.0487 1.8649 12 1 5.8657 -4.3904 3.1938 13 1 5.8598 -6.5215 2.0360 14 1 7.2292 -4.6974 1.2125 15 6 0.5435 -2.5543 1.8299 16 8 -0.1721 -1.7542 2.3944 17 6 0.1928 -4.0199 1.8437 18 6 -0.3011 -4.5928 0.5137 19 6 1.0247 -4.9371 2.7424 20 6 -0.4154 -4.5887 3.1273 21 1 -0.5614 -3.9030 3.9618 22 6 -1.4705 -5.6873 2.9826 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6055 -0.2618 2.1370 31 1 3.1263 -0.6444 1.2951 32 1 1.8584 -3.9403 0.1466 33 1 2.8637 -2.6010 -0.4566 34 1 5.0338 -5.5588 -0.7799 35 1 0.3625 -4.2715 -0.2891 36 1 -0.3067 -5.6815 0.5667 37 1 -1.3110 -4.2334 0.3160 38 1 1.2197 -5.9486 2.3864 39 1 1.8260 -4.4804 3.3235 40 1 -1.0356 -6.5430 2.4661 41 1 -1.8130 -5.9945 3.9707 42 1 -2.3148 -5.3066 2.4079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704361175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -32.926162 kcal Electronic energy + Delta-G solvation = -20220.256415 eV Core-core repulsion = 17393.495664 eV Total energy + Delta-G solvation = -2826.760752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72017 -37.10728 -35.58573 -33.96320 -32.23793 -29.24921 -27.49200 -27.35392 -26.74073 -25.74823 -23.06069 -21.79450 -20.26986 -19.29345 -17.69531 -16.50543 -16.08569 -15.69430 -14.64600 -14.49942 -14.20108 -13.89007 -13.57932 -13.15377 -12.72254 -12.59844 -12.45441 -12.10251 -12.05375 -11.86305 -11.85799 -11.46752 -11.34457 -11.19835 -10.92625 -10.89649 -10.78541 -10.57316 -10.48862 -10.26054 -10.03320 -9.65903 -9.56562 -9.17382 -8.79018 -8.48211 -7.60608 -6.13792 -4.18650 3.22123 3.31162 3.34258 3.44871 3.87874 4.33535 4.38653 5.17217 5.18971 5.27853 5.29014 5.35375 5.36100 5.49279 5.62920 5.66090 5.92220 6.01136 6.03717 6.05217 6.08891 6.20914 6.21560 6.25767 6.28978 6.32610 6.41477 6.46049 6.46620 6.54676 6.68789 6.70946 6.78105 6.82268 6.91734 7.31454 7.64613 7.80289 8.12884 8.44459 8.84818 9.11262 9.47437 10.93157 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.010272 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.815629 B = 2725.162556 C = 4227.656473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.588 5.588 6 C 0.229 3.771 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.550 3.450 16 O -0.572 6.572 17 C -0.138 4.138 18 C -0.109 4.109 19 C -0.128 4.128 20 C -0.142 4.142 21 H 0.102 0.898 22 C -0.116 4.116 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 2.581 1.373 7.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.000 4.000 5 N -0.316 5.316 6 C 0.109 3.891 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.531 5.531 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.338 3.662 16 O -0.453 6.453 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.165 4.165 20 C -0.161 4.161 21 H 0.120 0.880 22 C -0.173 4.173 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.855 2.873 1.510 7.584 hybrid contribution 1.114 -0.422 0.376 1.249 sum -5.741 2.451 1.886 6.521 Atomic orbital electron populations 1.21719 0.95100 1.01792 1.00454 1.21492 0.96294 0.95792 0.99593 1.21747 1.00881 0.95995 1.01260 1.21355 0.99760 0.81642 0.97250 1.48138 1.24597 1.08780 1.50133 1.19634 0.90275 0.87876 0.91271 1.21450 1.09829 1.25076 0.99980 0.92344 1.24879 0.97742 0.96107 0.94975 1.69922 1.36795 1.31497 1.14898 0.86556 0.82311 0.78604 0.80697 1.19757 1.20899 1.21025 1.19456 0.80447 0.88480 0.77817 1.90572 1.51446 1.55945 1.47310 1.21214 1.06348 0.92697 0.93805 1.21368 1.00335 1.00323 0.94623 1.23094 0.92817 0.99586 1.00981 1.22435 0.95560 1.00537 0.97548 0.87980 1.21306 0.97751 0.96984 1.01232 0.92853 0.92729 0.94033 0.91069 0.92677 0.93018 0.92926 0.91067 0.90724 0.92780 0.95270 0.92756 0.90718 0.91953 0.92899 0.88476 0.88260 0.92507 0.92603 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.15 37.16 0.30 -1.91 16 2 C -0.11 -1.86 3.12 -90.62 -0.28 -2.14 16 3 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 4 C 0.12 2.35 4.96 -4.04 -0.02 2.33 16 5 N -0.59 -12.42 2.23 -175.07 -0.39 -12.81 16 6 C 0.23 5.36 4.85 -5.20 -0.03 5.34 16 7 C -0.52 -13.32 8.55 -34.44 -0.29 -13.61 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 11 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.55 11.64 5.69 -10.98 -0.06 11.58 16 16 O -0.57 -13.01 15.23 5.55 0.08 -12.92 16 17 C -0.14 -2.59 1.41 -155.66 -0.22 -2.81 16 18 C -0.11 -1.87 8.50 37.16 0.32 -1.55 16 19 C -0.13 -2.35 8.70 -26.69 -0.23 -2.58 16 20 C -0.14 -2.37 5.96 -90.58 -0.54 -2.91 16 21 H 0.10 1.79 8.11 -51.93 -0.42 1.37 16 22 C -0.12 -1.55 9.13 37.16 0.34 -1.21 16 23 H 0.05 0.99 6.52 -51.93 -0.34 0.65 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.25 7.92 -51.93 -0.41 0.84 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.38 7.29 -51.93 -0.38 1.00 16 31 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 32 H 0.05 1.29 4.18 -51.93 -0.22 1.08 16 33 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.07 1.38 5.87 -51.93 -0.30 1.08 16 36 H 0.06 0.96 7.26 -51.93 -0.38 0.59 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.72 8.05 -51.93 -0.42 1.30 16 39 H 0.10 1.99 7.98 -51.92 -0.41 1.58 16 40 H 0.06 0.72 7.39 -51.93 -0.38 0.34 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -27.68 333.12 -7.47 -35.15 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.42 Total: 3.11 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.47 Total: -9.45 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.35 Total: -36.27 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.68 -7.47 -35.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704361175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.225 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds