Wall clock time and date at job start Mon Mar 30 2020 06:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.53003 * 109.46877 * 119.99578 * 2 1 3 5 5 N 1.46504 * 109.46776 * 174.91073 * 4 2 1 6 6 C 1.46502 * 120.00074 * 287.71439 * 5 4 2 7 7 C 1.50701 * 109.46986 * 274.23674 * 6 5 4 8 8 H 1.07995 * 119.99795 * 355.55726 * 7 6 5 9 9 C 1.37880 * 119.99703 * 175.55858 * 7 6 5 10 10 N 1.31514 * 119.99810 * 180.27746 * 9 7 6 11 11 Si 1.86795 * 119.99939 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47063 * 90.00271 * 11 9 7 13 13 H 1.48501 * 109.47165 * 209.99952 * 11 9 7 14 14 H 1.48501 * 109.47492 * 329.99963 * 11 9 7 15 15 C 1.34774 * 119.99847 * 107.71624 * 5 4 2 16 16 O 1.21281 * 120.00116 * 186.37588 * 15 5 4 17 17 C 1.50703 * 120.00289 * 6.37282 * 15 5 4 18 18 C 1.52996 * 115.54676 * 62.70500 * 17 15 5 19 19 C 1.53006 * 117.49763 * 277.03633 * 17 15 5 20 20 C 1.52992 * 117.50077 * 208.37825 * 17 15 5 21 21 H 1.09003 * 117.50140 * 214.98152 * 20 17 15 22 22 C 1.53004 * 117.50145 * 359.97437 * 20 17 15 23 23 H 1.09003 * 109.47160 * 300.00115 * 1 2 3 24 24 H 1.08997 * 109.47255 * 60.00082 * 1 2 3 25 25 H 1.09008 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47255 * 240.00144 * 2 1 3 27 27 H 1.09004 * 109.47424 * 176.84142 * 3 2 1 28 28 H 1.09002 * 109.46948 * 296.84147 * 3 2 1 29 29 H 1.08997 * 109.47382 * 56.84038 * 3 2 1 30 30 H 1.09000 * 109.47172 * 54.91451 * 4 2 1 31 31 H 1.08992 * 109.47383 * 294.90951 * 4 2 1 32 32 H 1.09004 * 109.46589 * 154.24017 * 6 5 4 33 33 H 1.08998 * 109.46770 * 34.23895 * 6 5 4 34 34 H 0.96994 * 119.99798 * 179.72241 * 10 9 7 35 35 H 1.08999 * 109.47652 * 64.92925 * 18 17 15 36 36 H 1.09003 * 109.47052 * 184.92794 * 18 17 15 37 37 H 1.08994 * 109.47242 * 304.92067 * 18 17 15 38 38 H 1.08994 * 117.49809 * 0.02562 * 19 17 15 39 39 H 1.08996 * 117.49509 * 145.01589 * 19 17 15 40 40 H 1.08995 * 109.47058 * 59.99742 * 22 20 17 41 41 H 1.09000 * 109.47508 * 180.02562 * 22 20 17 42 42 H 1.09008 * 109.46858 * 300.00182 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4998 -0.8282 1.1896 6 6 4.1282 -1.7591 0.2490 7 6 4.2145 -3.1262 0.8773 8 1 3.9052 -3.2700 1.9019 9 6 4.6884 -4.1932 0.1439 10 7 4.7586 -5.3874 0.6904 11 14 5.2241 -3.9442 -1.6282 12 1 6.6677 -3.5977 -1.6649 13 1 4.9957 -5.1953 -2.3949 14 1 4.4348 -2.8416 -2.2337 15 6 4.2647 -0.0703 2.0001 16 8 5.4708 -0.0723 1.8722 17 6 3.6215 0.7799 3.0652 18 6 2.8515 0.0155 4.1439 19 6 3.0794 2.1478 2.6455 20 6 4.3533 2.0549 3.4891 21 1 4.2860 2.3493 4.5364 22 6 5.6826 2.3689 2.7996 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1285 1.4431 0.0566 28 1 1.7235 1.9397 -0.9170 29 1 1.6311 1.9724 0.8603 30 1 1.6041 -1.7192 1.2961 31 1 1.7530 -0.1574 2.1369 32 1 5.1307 -1.4075 0.0049 33 1 3.5309 -1.8145 -0.6611 34 1 5.0882 -6.1388 0.1732 35 1 3.5445 -0.5988 4.7187 36 1 2.3571 0.7241 4.8085 37 1 2.1042 -0.6232 3.6732 38 1 3.1877 2.4326 1.5990 39 1 2.1745 2.5033 3.1382 40 1 5.5198 2.4734 1.7270 41 1 6.0880 3.2989 3.1982 42 1 6.3874 1.5577 2.9827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704361178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:53 Heat of formation + Delta-G solvation = -18.110101 kcal Electronic energy + Delta-G solvation = -20374.880661 eV Core-core repulsion = 17548.762382 eV Total energy + Delta-G solvation = -2826.118279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09825 -36.92314 -36.22973 -33.61119 -32.30271 -30.10100 -28.12539 -27.55732 -26.51890 -25.62663 -23.45111 -21.70018 -20.54354 -19.68262 -17.91809 -16.88202 -16.08322 -15.30267 -15.14640 -14.58673 -14.34275 -14.12437 -13.97292 -13.11752 -13.08219 -12.62918 -12.51265 -12.39314 -12.24502 -12.02729 -11.87449 -11.83537 -11.59862 -11.27657 -11.23764 -11.06451 -10.84252 -10.64918 -10.47973 -10.27692 -10.07801 -9.90767 -9.52328 -9.46868 -8.72404 -8.57936 -7.61019 -6.08283 -4.06554 3.27451 3.29288 3.35202 3.37144 3.77362 3.99193 4.39952 4.72674 4.90485 4.98490 5.07165 5.15408 5.23546 5.27776 5.37996 5.50637 5.67590 5.72717 5.75957 5.83879 5.85390 5.94780 5.96221 5.98476 6.03856 6.08139 6.16663 6.21162 6.29307 6.32505 6.36857 6.48291 6.55241 6.72085 6.79324 7.02306 7.41647 7.63521 8.33904 8.49298 8.94507 9.05488 9.52616 11.05088 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.008138 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.304917 B = 3439.855099 C = 4067.034830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.151 4.151 4 C 0.109 3.891 5 N -0.584 5.584 6 C 0.213 3.787 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.547 3.453 16 O -0.540 6.540 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.173 4.173 20 C -0.122 4.122 21 H 0.104 0.896 22 C -0.117 4.117 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 15.059 2.202 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.208 4.208 4 C -0.015 4.015 5 N -0.314 5.314 6 C 0.093 3.907 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.334 3.666 16 O -0.418 6.418 17 C -0.155 4.155 18 C -0.172 4.172 19 C -0.210 4.210 20 C -0.141 4.141 21 H 0.122 0.878 22 C -0.174 4.174 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.606 14.832 2.072 16.797 hybrid contribution 0.176 -0.232 -0.913 0.959 sum -7.430 14.600 1.159 16.423 Atomic orbital electron populations 1.21748 0.94977 1.01865 1.01346 1.21504 0.95465 0.96560 0.99989 1.22142 1.01229 0.96145 1.01241 1.21743 0.81218 1.01004 0.97509 1.47774 1.05678 1.39472 1.38502 1.19654 0.94009 0.88655 0.88413 1.21343 1.43542 0.90907 1.00774 0.90750 1.24850 0.95005 0.94986 0.98160 1.69896 1.46786 0.99880 1.37096 0.86875 0.79887 0.77788 0.85301 1.19951 1.21088 1.19024 1.19288 0.86586 0.79577 0.81167 1.90618 1.14319 1.65909 1.70919 1.21520 1.04412 0.89960 0.99572 1.21424 0.99565 0.99755 0.96420 1.23687 0.97808 0.97940 1.01542 1.22393 0.93745 0.98549 0.99412 0.87755 1.21379 0.95594 1.01008 0.99453 0.92827 0.92891 0.92419 0.90752 0.92537 0.93331 0.92026 0.90668 0.89876 0.94392 0.95310 0.92599 0.91654 0.92130 0.91053 0.87394 0.88530 0.92973 0.93436 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.24 16 2 C -0.12 -1.63 3.00 -90.62 -0.27 -1.90 16 3 C -0.15 -1.92 7.31 37.16 0.27 -1.65 16 4 C 0.11 1.79 4.41 -4.04 -0.02 1.77 16 5 N -0.58 -12.08 2.06 -175.06 -0.36 -12.44 16 6 C 0.21 5.27 4.28 -5.19 -0.02 5.24 16 7 C -0.53 -15.16 9.94 -34.44 -0.34 -15.51 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 11 Si 0.87 21.73 27.56 -169.99 -4.68 17.04 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.23 6.42 56.52 0.36 -5.87 16 15 C 0.55 11.24 6.03 -10.99 -0.07 11.17 16 16 O -0.54 -13.10 13.51 5.56 0.08 -13.03 16 17 C -0.15 -2.34 1.36 -155.66 -0.21 -2.56 16 18 C -0.11 -1.57 9.26 37.16 0.34 -1.23 16 19 C -0.17 -2.13 7.30 -26.69 -0.19 -2.32 16 20 C -0.12 -1.67 6.12 -90.59 -0.55 -2.23 16 21 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 22 C -0.12 -1.74 8.55 37.16 0.32 -1.43 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.07 1.19 7.10 -51.93 -0.37 0.82 16 27 H 0.06 0.85 6.07 -51.93 -0.31 0.53 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.17 4.14 -51.93 -0.21 0.96 16 32 H 0.04 1.01 6.88 -51.93 -0.36 0.65 16 33 H 0.03 0.69 5.80 -51.93 -0.30 0.39 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.07 0.98 5.76 -51.93 -0.30 0.68 16 38 H 0.11 1.37 4.76 -51.93 -0.25 1.12 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.82 7.81 -51.93 -0.41 0.41 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.40 6.79 -51.92 -0.35 1.05 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -32.47 318.76 -6.89 -39.36 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.99 Total: 1.08 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.50 Total: -9.87 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.41 Total: -39.40 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.68 Total: 17.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.47 -6.89 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704361178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.254 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds