Wall clock time and date at job start Mon Mar 30 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47212 * 2 1 4 4 N 1.46498 * 109.47037 * 120.00242 * 2 1 3 5 5 C 1.36932 * 119.99978 * 125.59367 * 4 2 1 6 6 H 1.08004 * 119.99842 * 154.76114 * 5 4 2 7 7 C 1.38807 * 120.00249 * 334.75811 * 5 4 2 8 8 N 1.31617 * 120.00464 * 145.27014 * 7 5 4 9 9 Si 1.86806 * 120.00009 * 325.27531 * 7 5 4 10 10 H 1.48494 * 109.47145 * 88.84978 * 9 7 5 11 11 H 1.48501 * 109.46851 * 208.85092 * 9 7 5 12 12 H 1.48497 * 109.46826 * 328.84750 * 9 7 5 13 13 C 1.46503 * 119.99988 * 305.59549 * 4 2 1 14 14 C 1.53006 * 109.46889 * 269.99970 * 13 4 2 15 15 H 1.09004 * 110.34564 * 60.67064 * 14 13 4 16 16 C 1.54992 * 110.30195 * 182.80105 * 14 13 4 17 17 C 1.55440 * 101.01010 * 155.06659 * 16 14 13 18 18 C 1.53844 * 102.04888 * 326.32221 * 17 16 14 19 19 C 1.53186 * 114.62240 * 151.43712 * 18 17 16 20 20 C 1.53886 * 86.91913 * 90.96712 * 19 18 17 21 21 C 1.53208 * 114.59951 * 250.68047 * 18 17 16 22 22 O 1.42629 * 108.27096 * 21.02329 * 18 17 16 23 23 H 1.08995 * 109.47318 * 300.00299 * 1 2 3 24 24 H 1.08997 * 109.47016 * 59.99855 * 1 2 3 25 25 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46985 * 240.00188 * 2 1 3 27 27 H 1.08997 * 109.46991 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47248 * 300.00003 * 3 2 1 29 29 H 1.09004 * 109.46993 * 60.00193 * 3 2 1 30 30 H 0.96998 * 120.00879 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47433 * 150.00337 * 13 4 2 32 32 H 1.08999 * 109.47276 * 29.99519 * 13 4 2 33 33 H 1.09000 * 111.11915 * 37.13165 * 16 14 13 34 34 H 1.09004 * 111.15392 * 273.01536 * 16 14 13 35 35 H 1.09003 * 110.91262 * 208.13690 * 17 16 14 36 36 H 1.09002 * 110.91521 * 84.51142 * 17 16 14 37 37 H 1.08999 * 113.64537 * 205.47166 * 19 18 17 38 38 H 1.09002 * 113.64393 * 336.46191 * 19 18 17 39 39 H 1.09000 * 113.60001 * 270.43521 * 20 19 18 40 40 H 1.08999 * 113.67550 * 139.58701 * 20 19 18 41 41 H 1.09009 * 113.63799 * 23.51411 * 21 18 17 42 42 H 1.08994 * 113.64775 * 154.50537 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8973 -1.7335 1.0737 6 1 3.5617 -1.9782 1.8892 7 6 2.9343 -2.4761 -0.0984 8 7 4.0780 -2.9580 -0.5364 9 14 1.3606 -2.7915 -1.0543 10 1 1.1412 -1.6887 -2.0242 11 1 1.4755 -4.0787 -1.7859 12 1 0.2144 -2.8580 -0.1126 13 6 1.5662 -0.2656 2.5233 14 6 2.5148 0.8050 3.0665 15 1 2.5216 1.6742 2.4088 16 6 2.0948 1.2183 4.5000 17 6 3.4465 1.7340 5.0684 18 6 4.4612 0.8133 4.3687 19 6 5.8438 1.4360 4.1511 20 6 6.2333 0.8450 5.5175 21 6 5.1355 -0.2090 5.2893 22 8 3.8437 0.2717 3.2026 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 4.1040 -3.4766 -1.3557 31 1 1.5613 -1.1223 3.1971 32 1 0.5591 0.1448 2.4499 33 1 1.7328 0.3600 5.0661 34 1 1.3494 2.0134 4.4777 35 1 3.4875 1.6071 6.1502 36 1 3.6121 2.7757 4.7935 37 1 6.3921 1.0020 3.3149 38 1 5.8345 2.5258 4.1329 39 1 6.0304 1.5120 6.3554 40 1 7.2400 0.4278 5.5431 41 1 4.5575 -0.4390 6.1845 42 1 5.4866 -1.1005 4.7698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712391814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:54 Heat of formation + Delta-G solvation = 3.263220 kcal Electronic energy + Delta-G solvation = -20425.271642 eV Core-core repulsion = 17600.080180 eV Total energy + Delta-G solvation = -2825.191462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03909 -37.22942 -35.61932 -32.02067 -31.73429 -30.67728 -28.15270 -26.52762 -25.50859 -24.71462 -22.75465 -22.08071 -20.69815 -19.40620 -18.49891 -17.04683 -15.95721 -15.60988 -15.20555 -14.74976 -14.39605 -13.81112 -13.40099 -13.13108 -12.91153 -12.84251 -12.45321 -12.04652 -11.88554 -11.71945 -11.63414 -11.55822 -11.22735 -11.11536 -10.91031 -10.76868 -10.72195 -10.35870 -10.28300 -10.23681 -10.00807 -9.89006 -9.52584 -9.21902 -8.69608 -8.28078 -6.84476 -5.85742 -3.03687 3.44111 3.60056 3.62094 4.28666 4.69004 4.74473 4.78156 4.91187 4.94195 5.01716 5.22445 5.37567 5.42344 5.50171 5.65480 5.76877 5.83721 5.88487 5.94001 5.98952 6.00208 6.05565 6.07276 6.17018 6.21031 6.25900 6.29035 6.30888 6.38688 6.49490 6.53517 6.60253 6.64433 6.69963 6.90384 7.09224 7.16066 7.88299 8.16594 8.54398 9.17041 9.92613 10.27835 11.29734 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.007474 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.854732 B = 3745.306499 C = 4324.293435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.147 3.853 3 C -0.158 4.158 4 N -0.588 5.588 5 C -0.245 4.245 6 H 0.089 0.911 7 C 0.028 3.972 8 N -0.888 5.888 9 Si 0.847 3.153 10 H -0.286 1.286 11 H -0.306 1.306 12 H -0.273 1.273 13 C 0.148 3.852 14 C 0.058 3.942 15 H 0.065 0.935 16 C -0.154 4.154 17 C -0.128 4.128 18 C 0.079 3.921 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.138 4.138 22 O -0.324 6.324 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 10.596 10.453 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.041 3.959 3 C -0.217 4.217 4 N -0.308 5.308 5 C -0.373 4.373 6 H 0.106 0.894 7 C -0.171 4.171 8 N -0.530 5.530 9 Si 0.676 3.324 10 H -0.213 1.213 11 H -0.235 1.235 12 H -0.199 1.199 13 C 0.021 3.979 14 C -0.002 4.002 15 H 0.083 0.917 16 C -0.192 4.192 17 C -0.166 4.166 18 C 0.038 3.962 19 C -0.179 4.179 20 C -0.178 4.178 21 C -0.176 4.176 22 O -0.242 6.242 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.109 10.310 10.190 14.648 hybrid contribution -0.984 -0.063 -0.511 1.111 sum -3.093 10.248 9.679 14.431 Atomic orbital electron populations 1.22477 0.98900 1.01679 1.00351 1.20743 0.91271 0.92202 0.91729 1.22376 1.01878 0.98044 0.99369 1.44141 1.52421 1.35198 0.99060 1.18886 1.10150 1.05748 1.02476 0.89372 1.25188 0.96127 0.99052 0.96764 1.70096 1.23585 1.37768 1.21521 0.87547 0.88265 0.76615 0.79945 1.21349 1.23450 1.19894 1.20967 0.93420 0.95517 0.88008 1.24092 0.84450 0.97847 0.93827 0.91733 1.23349 0.96967 1.01166 0.97722 1.22790 0.94494 0.99087 1.00185 1.23042 0.92120 0.93536 0.87487 1.23304 0.97018 0.99751 0.97832 1.22688 0.99042 0.98762 0.97346 1.23265 0.97119 0.98308 0.98897 1.88708 1.26925 1.66691 1.41870 0.93087 0.93465 0.92584 0.90030 0.92351 0.94253 0.93665 0.93150 0.92432 0.93086 0.90639 0.90823 0.90717 0.90931 0.89178 0.91862 0.90656 0.91267 0.91763 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 8.43 37.16 0.31 -3.06 16 2 C 0.15 3.27 2.20 -67.93 -0.15 3.12 16 3 C -0.16 -3.02 8.50 37.16 0.32 -2.70 16 4 N -0.59 -14.05 2.16 -165.66 -0.36 -14.41 16 5 C -0.24 -6.95 9.42 -15.06 -0.14 -7.10 16 6 H 0.09 2.74 7.73 -52.48 -0.41 2.33 16 7 C 0.03 0.81 4.95 -17.43 -0.09 0.73 16 8 N -0.89 -27.72 13.97 55.49 0.78 -26.94 16 9 Si 0.85 22.21 23.79 -169.99 -4.04 18.17 16 10 H -0.29 -7.24 6.39 56.52 0.36 -6.88 16 11 H -0.31 -8.25 7.11 56.52 0.40 -7.85 16 12 H -0.27 -7.03 6.21 56.52 0.35 -6.68 16 13 C 0.15 2.94 5.00 -4.04 -0.02 2.92 16 14 C 0.06 1.03 3.41 -25.68 -0.09 0.94 16 15 H 0.06 1.17 5.52 -51.93 -0.29 0.88 16 16 C -0.15 -2.10 6.58 -24.38 -0.16 -2.26 16 17 C -0.13 -1.64 6.13 -25.00 -0.15 -1.80 16 18 C 0.08 1.25 1.65 -89.98 -0.15 1.10 16 19 C -0.14 -2.04 7.60 -26.17 -0.20 -2.24 16 20 C -0.14 -1.72 7.88 -25.81 -0.20 -1.93 16 21 C -0.14 -2.01 7.51 -26.16 -0.20 -2.21 16 22 O -0.32 -6.64 9.94 -35.23 -0.35 -6.99 16 23 H 0.05 0.86 6.51 -51.93 -0.34 0.53 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.17 5.41 -51.93 -0.28 0.89 16 26 H 0.08 2.06 4.02 -51.93 -0.21 1.86 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.78 5.99 -51.93 -0.31 0.47 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 32 H 0.05 0.90 6.15 -51.93 -0.32 0.58 16 33 H 0.07 1.01 8.05 -51.93 -0.42 0.60 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.84 8.00 -51.92 -0.42 0.42 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -31.28 311.54 -7.45 -38.73 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.25 Total: 1.24 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.92 Total: -14.49 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.42 Total: -41.35 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.35 Total: -6.99 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.04 Total: 18.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.28 -7.45 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.990 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds