Wall clock time and date at job start Mon Mar 30 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47212 * 2 1 4 4 N 1.46498 * 109.47037 * 120.00242 * 2 1 3 5 5 C 1.36932 * 119.99978 * 125.59367 * 4 2 1 6 6 H 1.08004 * 119.99842 * 154.76114 * 5 4 2 7 7 C 1.38807 * 120.00249 * 334.75811 * 5 4 2 8 8 N 1.31617 * 120.00464 * 145.27014 * 7 5 4 9 9 Si 1.86806 * 120.00009 * 325.27531 * 7 5 4 10 10 H 1.48494 * 109.47145 * 88.84978 * 9 7 5 11 11 H 1.48501 * 109.46851 * 208.85092 * 9 7 5 12 12 H 1.48497 * 109.46826 * 328.84750 * 9 7 5 13 13 C 1.46503 * 119.99988 * 305.59549 * 4 2 1 14 14 C 1.53006 * 109.46889 * 269.99970 * 13 4 2 15 15 H 1.09004 * 110.34564 * 60.67064 * 14 13 4 16 16 C 1.54992 * 110.30195 * 182.80105 * 14 13 4 17 17 C 1.55440 * 101.01010 * 155.06659 * 16 14 13 18 18 C 1.53844 * 102.04888 * 326.32221 * 17 16 14 19 19 C 1.53186 * 114.62240 * 151.43712 * 18 17 16 20 20 C 1.53886 * 86.91913 * 90.96712 * 19 18 17 21 21 C 1.53208 * 114.59951 * 250.68047 * 18 17 16 22 22 O 1.42629 * 108.27096 * 21.02329 * 18 17 16 23 23 H 1.08995 * 109.47318 * 300.00299 * 1 2 3 24 24 H 1.08997 * 109.47016 * 59.99855 * 1 2 3 25 25 H 1.08997 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46985 * 240.00188 * 2 1 3 27 27 H 1.08997 * 109.46991 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47248 * 300.00003 * 3 2 1 29 29 H 1.09004 * 109.46993 * 60.00193 * 3 2 1 30 30 H 0.96998 * 120.00879 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47433 * 150.00337 * 13 4 2 32 32 H 1.08999 * 109.47276 * 29.99519 * 13 4 2 33 33 H 1.09000 * 111.11915 * 37.13165 * 16 14 13 34 34 H 1.09004 * 111.15392 * 273.01536 * 16 14 13 35 35 H 1.09003 * 110.91262 * 208.13690 * 17 16 14 36 36 H 1.09002 * 110.91521 * 84.51142 * 17 16 14 37 37 H 1.08999 * 113.64537 * 205.47166 * 19 18 17 38 38 H 1.09002 * 113.64393 * 336.46191 * 19 18 17 39 39 H 1.09000 * 113.60001 * 270.43521 * 20 19 18 40 40 H 1.08999 * 113.67550 * 139.58701 * 20 19 18 41 41 H 1.09009 * 113.63799 * 23.51411 * 21 18 17 42 42 H 1.08994 * 113.64775 * 154.50537 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8973 -1.7335 1.0737 6 1 3.5617 -1.9782 1.8892 7 6 2.9343 -2.4761 -0.0984 8 7 4.0780 -2.9580 -0.5364 9 14 1.3606 -2.7915 -1.0543 10 1 1.1412 -1.6887 -2.0242 11 1 1.4755 -4.0787 -1.7859 12 1 0.2144 -2.8580 -0.1126 13 6 1.5662 -0.2656 2.5233 14 6 2.5148 0.8050 3.0665 15 1 2.5216 1.6742 2.4088 16 6 2.0948 1.2183 4.5000 17 6 3.4465 1.7340 5.0684 18 6 4.4612 0.8133 4.3687 19 6 5.8438 1.4360 4.1511 20 6 6.2333 0.8450 5.5175 21 6 5.1355 -0.2090 5.2893 22 8 3.8437 0.2717 3.2026 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 4.1040 -3.4766 -1.3557 31 1 1.5613 -1.1223 3.1971 32 1 0.5591 0.1448 2.4499 33 1 1.7328 0.3600 5.0661 34 1 1.3494 2.0134 4.4777 35 1 3.4875 1.6071 6.1502 36 1 3.6121 2.7757 4.7935 37 1 6.3921 1.0020 3.3149 38 1 5.8345 2.5258 4.1329 39 1 6.0304 1.5120 6.3554 40 1 7.2400 0.4278 5.5431 41 1 4.5575 -0.4390 6.1845 42 1 5.4866 -1.1005 4.7698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712391814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:53 Heat of formation + Delta-G solvation = -16.757642 kcal Electronic energy + Delta-G solvation = -20426.139812 eV Core-core repulsion = 17600.080180 eV Total energy + Delta-G solvation = -2826.059632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26503 -38.86349 -37.00910 -34.13666 -33.06109 -32.30220 -29.76518 -28.05673 -26.67549 -26.27579 -24.41490 -23.31368 -22.09459 -21.16456 -19.69270 -18.86927 -17.47786 -17.18653 -16.77707 -16.03606 -15.82598 -15.32323 -15.27780 -14.87674 -14.46463 -14.25855 -13.80046 -13.65876 -13.28641 -13.22423 -13.01313 -12.92900 -12.74511 -12.54171 -12.52197 -12.18558 -12.02697 -11.84179 -11.80145 -11.77731 -11.44117 -11.40799 -11.11757 -11.04771 -10.45696 -10.05340 -8.81605 -8.12457 -5.25670 1.32948 1.42783 1.51783 2.49316 2.96518 3.06917 3.52035 3.63699 3.69043 3.79817 3.93244 4.05056 4.14306 4.19982 4.30219 4.40845 4.52183 4.57313 4.64004 4.78929 4.81571 4.84931 4.86684 4.88322 4.91592 4.93944 5.01652 5.03328 5.03869 5.08176 5.15477 5.19925 5.30379 5.41070 5.49399 5.53609 5.57840 6.00302 6.28392 6.61647 7.07631 7.81082 8.15813 9.07677 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.007474 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.854732 B = 3745.306499 C = 4324.293435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 C -0.146 4.146 4 N -0.600 5.600 5 C -0.225 4.225 6 H 0.042 0.958 7 C -0.034 4.034 8 N -0.943 5.943 9 Si 0.918 3.082 10 H -0.270 1.270 11 H -0.319 1.319 12 H -0.261 1.261 13 C 0.145 3.855 14 C 0.054 3.946 15 H 0.063 0.937 16 C -0.143 4.143 17 C -0.116 4.116 18 C 0.060 3.940 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.147 4.147 22 O -0.376 6.376 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.256 0.744 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 13.529 12.055 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.030 3.970 3 C -0.205 4.205 4 N -0.321 5.321 5 C -0.355 4.355 6 H 0.060 0.940 7 C -0.229 4.229 8 N -0.589 5.589 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.248 1.248 12 H -0.187 1.187 13 C 0.019 3.981 14 C -0.005 4.005 15 H 0.081 0.919 16 C -0.181 4.181 17 C -0.154 4.154 18 C 0.020 3.980 19 C -0.185 4.185 20 C -0.156 4.156 21 C -0.184 4.184 22 O -0.295 6.295 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.687 13.288 11.816 18.389 hybrid contribution -0.113 -0.940 -0.943 1.337 sum -4.800 12.347 10.873 17.138 Atomic orbital electron populations 1.22378 0.95821 1.01334 1.03087 1.20887 0.93571 0.93136 0.89427 1.22219 0.99856 0.96512 1.01899 1.44220 1.52135 1.34337 1.01439 1.18679 1.09550 1.06569 1.00721 0.94015 1.25725 0.98651 0.99919 0.98564 1.70216 1.25715 1.40231 1.22757 0.86412 0.83991 0.75986 0.78904 1.19629 1.24797 1.18656 1.21183 0.95582 0.95702 0.85604 1.24016 0.83354 0.96533 0.96620 0.91899 1.23308 0.98199 1.02193 0.94414 1.22792 0.92383 0.98912 1.01279 1.23502 0.93153 0.94592 0.86774 1.23289 0.96316 1.00775 0.98160 1.22663 0.98422 0.97694 0.96862 1.23259 0.98547 0.97539 0.99086 1.88672 1.28517 1.68072 1.44282 0.90309 0.90820 0.94390 0.93690 0.95407 0.91499 0.91259 0.93487 0.94250 0.89825 0.90573 0.87643 0.88099 0.89337 0.92561 0.89863 0.87345 0.90814 0.89963 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 8.43 71.98 0.61 -5.22 16 2 C 0.14 5.82 2.20 44.99 0.10 5.92 16 3 C -0.15 -5.28 8.50 71.98 0.61 -4.67 16 4 N -0.60 -28.79 2.16 -678.02 -1.46 -30.25 16 5 C -0.23 -13.42 9.42 84.03 0.79 -12.63 16 6 H 0.04 2.82 7.73 -2.91 -0.02 2.80 16 7 C -0.03 -2.07 4.95 84.86 0.42 -1.65 16 8 N -0.94 -62.27 13.97 21.65 0.30 -61.96 16 9 Si 0.92 47.56 23.79 68.60 1.63 49.20 16 10 H -0.27 -13.12 6.39 99.48 0.64 -12.48 16 11 H -0.32 -16.99 7.11 99.48 0.71 -16.29 16 12 H -0.26 -12.89 6.21 99.48 0.62 -12.28 16 13 C 0.14 5.60 5.00 86.38 0.43 6.03 16 14 C 0.05 1.86 3.41 31.28 0.11 1.96 16 15 H 0.06 2.15 5.52 -2.39 -0.01 2.14 16 16 C -0.14 -3.41 6.58 32.12 0.21 -3.20 16 17 C -0.12 -2.56 6.13 31.72 0.19 -2.37 16 18 C 0.06 1.85 1.65 -10.38 -0.02 1.83 16 19 C -0.15 -4.22 7.60 30.96 0.24 -3.98 16 20 C -0.12 -2.71 7.88 31.19 0.25 -2.47 16 21 C -0.15 -4.27 7.51 30.96 0.23 -4.04 16 22 O -0.38 -15.89 9.94 -148.98 -1.48 -17.37 16 23 H 0.08 2.27 6.51 -2.39 -0.02 2.26 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.04 1.45 5.41 -2.39 -0.01 1.44 16 26 H 0.05 2.26 4.02 -2.39 -0.01 2.25 16 27 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.15 5.99 -2.39 -0.01 2.14 16 30 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 31 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 32 H 0.08 2.65 6.15 -2.39 -0.01 2.64 16 33 H 0.08 1.81 8.05 -2.39 -0.02 1.80 16 34 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.10 1.73 7.85 -2.39 -0.02 1.71 16 36 H 0.09 1.70 8.00 -2.39 -0.02 1.68 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 1.99 8.00 -2.39 -0.02 1.97 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.04 8.00 -2.38 -0.02 2.02 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.74 311.54 3.98 -69.76 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.82 Total: 15.11 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.17 Total: -24.48 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -1.16 Total: -92.21 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.48 Total: -17.37 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.63 Total: 49.20 kcal Total: -73.74 3.98 -69.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712391814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.001 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds