Wall clock time and date at job start Mon Mar 30 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 N 1.46503 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99968 * 270.47431 * 4 3 2 6 6 H 1.08001 * 119.99668 * 326.03760 * 5 4 3 7 7 C 1.38804 * 120.00215 * 146.04613 * 5 4 3 8 8 N 1.31626 * 120.00323 * 336.62713 * 7 5 4 9 9 Si 1.86800 * 120.00297 * 156.62775 * 7 5 4 10 10 H 1.48507 * 109.47137 * 59.99690 * 9 7 5 11 11 H 1.48497 * 109.47489 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47046 * 299.99952 * 9 7 5 13 13 C 1.46503 * 119.99869 * 90.46447 * 4 3 2 14 14 C 1.53005 * 109.46745 * 90.00367 * 13 4 3 15 15 H 1.08996 * 110.29305 * 57.84837 * 14 13 4 16 16 C 1.54535 * 110.33212 * 179.97438 * 14 13 4 17 17 C 1.54720 * 104.07608 * 142.54359 * 16 14 13 18 18 C 1.53554 * 103.74922 * 359.30913 * 17 16 14 19 19 C 1.52806 * 115.48961 * 207.49554 * 18 17 16 20 20 C 1.53958 * 86.79596 * 217.68827 * 19 18 17 21 21 C 1.52822 * 115.46141 * 106.78827 * 18 17 16 22 22 O 1.43355 * 106.13185 * 337.16846 * 18 17 16 23 23 H 1.09002 * 109.46935 * 60.00257 * 1 2 3 24 24 H 1.09005 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47365 * 300.00349 * 1 2 3 26 26 H 1.08991 * 109.47218 * 239.99635 * 2 1 3 27 27 H 1.09002 * 109.46935 * 119.99743 * 2 1 3 28 28 H 1.09001 * 109.47094 * 60.00119 * 3 2 1 29 29 H 1.09002 * 109.47139 * 299.99618 * 3 2 1 30 30 H 0.96992 * 120.00187 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47269 * 330.00655 * 13 4 3 32 32 H 1.09002 * 109.47164 * 209.99784 * 13 4 3 33 33 H 1.09002 * 110.51094 * 23.89486 * 16 14 13 34 34 H 1.09003 * 110.51016 * 261.19503 * 16 14 13 35 35 H 1.08994 * 110.57312 * 240.74456 * 17 16 14 36 36 H 1.08994 * 110.57249 * 117.87159 * 17 16 14 37 37 H 1.09000 * 113.65657 * 332.16786 * 19 18 17 38 38 H 1.08997 * 113.65565 * 103.21009 * 19 18 17 39 39 H 1.09001 * 113.58474 * 270.12308 * 20 19 18 40 40 H 1.08993 * 113.58645 * 139.30716 * 20 19 18 41 41 H 1.08998 * 113.65670 * 256.81386 * 21 18 17 42 42 H 1.08993 * 113.65769 * 27.86363 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.4329 1.1868 6 1 3.7869 1.9485 2.0463 7 6 5.3996 0.7608 1.2844 8 7 5.6781 -0.2181 0.4497 9 14 6.6337 1.2454 2.6003 10 1 6.0196 1.0750 3.9417 11 1 7.8363 0.3808 2.4937 12 1 7.0260 2.6653 2.4123 13 6 4.2380 1.4527 -1.2678 14 6 4.4932 2.8987 -1.6978 15 1 5.0490 3.4303 -0.9254 16 6 5.2668 2.9327 -3.0351 17 6 4.6561 4.1355 -3.7927 18 6 3.5823 4.6653 -2.8313 19 6 2.4047 5.3816 -3.4909 20 6 2.4362 6.3510 -2.2952 21 6 3.9208 5.9791 -2.1278 22 8 3.2417 3.5697 -1.9718 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.5238 -0.6880 0.5181 31 1 3.6492 0.9450 -2.0318 32 1 5.1904 0.9379 -1.1412 33 1 5.1072 2.0095 -3.5922 34 1 6.3302 3.0934 -2.8571 35 1 4.2040 3.8088 -4.7291 36 1 5.4140 4.8968 -3.9772 37 1 2.6557 5.8516 -4.4419 38 1 1.4984 4.7783 -3.5412 39 1 1.8106 6.0345 -1.4606 40 1 2.2762 7.3925 -2.5738 41 1 4.2258 5.8530 -1.0890 42 1 4.5982 6.6171 -2.6952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712535768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:03 Heat of formation + Delta-G solvation = -17.627757 kcal Electronic energy + Delta-G solvation = -20106.177001 eV Core-core repulsion = 17280.079638 eV Total energy + Delta-G solvation = -2826.097363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.03774 -36.55670 -35.17444 -32.76705 -31.60117 -30.66467 -28.34724 -25.63754 -25.42116 -24.64476 -22.40815 -21.30112 -20.48800 -19.59099 -18.89750 -16.65703 -15.82987 -15.47314 -14.91854 -14.47125 -14.32973 -14.02749 -13.66998 -13.18084 -13.02432 -12.66458 -12.56058 -12.17543 -11.93545 -11.42196 -11.31379 -11.20581 -10.98142 -10.85995 -10.71092 -10.69079 -10.61766 -10.29306 -10.20254 -10.03081 -9.98139 -9.69153 -9.66601 -9.45877 -8.90297 -8.43424 -6.52402 -5.73706 -3.24568 3.39289 3.45158 3.47899 4.25862 4.53130 4.78612 4.81735 5.00749 5.14830 5.30607 5.39490 5.45048 5.54409 5.64162 5.77465 5.85446 5.87629 5.93964 5.96549 6.05083 6.08518 6.13865 6.27718 6.28720 6.32544 6.49365 6.51210 6.54161 6.55852 6.64473 6.67652 6.86891 6.89304 7.13769 7.21180 7.41839 7.58092 7.80595 7.87718 8.56180 9.25433 9.90463 10.48894 11.26836 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.008057 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.341586 B = 3474.582288 C = 4373.006391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.153 3.847 4 N -0.580 5.580 5 C -0.249 4.249 6 H 0.060 0.940 7 C 0.005 3.995 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.153 3.847 14 C 0.061 3.939 15 H 0.062 0.938 16 C -0.149 4.149 17 C -0.138 4.138 18 C 0.080 3.920 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.158 4.158 22 O -0.336 6.336 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.254 0.746 31 H 0.028 0.972 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 8.635 -8.082 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.026 3.974 4 N -0.299 5.299 5 C -0.379 4.379 6 H 0.078 0.922 7 C -0.194 4.194 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.026 3.974 14 C 0.002 3.998 15 H 0.080 0.920 16 C -0.188 4.188 17 C -0.175 4.175 18 C 0.039 3.961 19 C -0.167 4.167 20 C -0.171 4.171 21 C -0.196 4.196 22 O -0.255 6.255 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.994 8.448 -7.981 12.289 hybrid contribution 1.013 0.233 0.609 1.205 sum -2.981 8.681 -7.372 11.773 Atomic orbital electron populations 1.21748 0.97937 1.00083 1.00643 1.22102 0.92938 1.01259 1.01756 1.20906 0.85044 0.92858 0.98557 1.43753 0.99584 1.84598 1.01929 1.19080 1.02689 1.25715 0.90435 0.92212 1.25036 1.00779 0.95409 0.98219 1.69956 1.23721 1.20128 1.39679 0.86507 0.81150 0.78091 0.81950 1.20820 1.21685 1.21088 1.21135 1.00521 0.89401 0.86364 1.24071 0.83576 0.98185 0.93981 0.91953 1.22975 1.00080 0.98166 0.97558 1.22718 0.97955 0.98073 0.98789 1.22541 0.94431 0.88328 0.90798 1.22885 0.98678 0.97598 0.97527 1.22787 0.97076 0.98481 0.98742 1.23329 0.96828 0.97467 1.01970 1.89036 1.29730 1.40157 1.66586 0.93670 0.94065 0.93530 0.93258 0.92179 0.94593 0.93864 0.93605 0.95329 0.87158 0.91062 0.91386 0.91245 0.91372 0.89638 0.90783 0.89879 0.91987 0.90796 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 37.16 0.37 -2.07 16 2 C -0.14 -2.94 6.26 -26.73 -0.17 -3.11 16 3 C 0.15 3.44 5.49 -4.04 -0.02 3.41 16 4 N -0.58 -14.71 2.42 -173.23 -0.42 -15.13 16 5 C -0.25 -6.87 9.48 -15.06 -0.14 -7.01 16 6 H 0.06 1.66 7.93 -52.49 -0.42 1.25 16 7 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 8 N -0.89 -25.37 11.34 55.49 0.63 -24.75 16 9 Si 0.89 21.63 29.61 -169.99 -5.03 16.59 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.15 3.63 4.92 -4.04 -0.02 3.61 16 14 C 0.06 1.27 3.55 -25.92 -0.09 1.17 16 15 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 16 C -0.15 -2.51 6.64 -25.02 -0.17 -2.68 16 17 C -0.14 -1.97 6.48 -25.54 -0.17 -2.14 16 18 C 0.08 1.25 1.13 -90.53 -0.10 1.15 16 19 C -0.13 -1.70 7.61 -26.33 -0.20 -1.90 16 20 C -0.13 -1.73 8.09 -25.74 -0.21 -1.94 16 21 C -0.16 -2.25 7.57 -26.32 -0.20 -2.45 16 22 O -0.34 -6.69 10.02 -35.23 -0.35 -7.04 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 29 H 0.04 0.95 7.17 -51.93 -0.37 0.57 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.11 2.91 5.33 -51.93 -0.28 2.63 16 33 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.92 8.11 -51.93 -0.42 0.49 16 36 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -28.63 331.13 -9.15 -37.78 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.76 Total: 1.47 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.20 Total: -13.92 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.21 Total: -39.87 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.35 Total: -7.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.63 -9.15 -37.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712535768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.149 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds