Wall clock time and date at job start Mon Mar 30 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 N 1.46503 * 109.46980 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99968 * 270.47431 * 4 3 2 6 6 H 1.08001 * 119.99668 * 326.03760 * 5 4 3 7 7 C 1.38804 * 120.00215 * 146.04613 * 5 4 3 8 8 N 1.31626 * 120.00323 * 336.62713 * 7 5 4 9 9 Si 1.86800 * 120.00297 * 156.62775 * 7 5 4 10 10 H 1.48507 * 109.47137 * 59.99690 * 9 7 5 11 11 H 1.48497 * 109.47489 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47046 * 299.99952 * 9 7 5 13 13 C 1.46503 * 119.99869 * 90.46447 * 4 3 2 14 14 C 1.53005 * 109.46745 * 90.00367 * 13 4 3 15 15 H 1.08996 * 110.29305 * 57.84837 * 14 13 4 16 16 C 1.54535 * 110.33212 * 179.97438 * 14 13 4 17 17 C 1.54720 * 104.07608 * 142.54359 * 16 14 13 18 18 C 1.53554 * 103.74922 * 359.30913 * 17 16 14 19 19 C 1.52806 * 115.48961 * 207.49554 * 18 17 16 20 20 C 1.53958 * 86.79596 * 217.68827 * 19 18 17 21 21 C 1.52822 * 115.46141 * 106.78827 * 18 17 16 22 22 O 1.43355 * 106.13185 * 337.16846 * 18 17 16 23 23 H 1.09002 * 109.46935 * 60.00257 * 1 2 3 24 24 H 1.09005 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47365 * 300.00349 * 1 2 3 26 26 H 1.08991 * 109.47218 * 239.99635 * 2 1 3 27 27 H 1.09002 * 109.46935 * 119.99743 * 2 1 3 28 28 H 1.09001 * 109.47094 * 60.00119 * 3 2 1 29 29 H 1.09002 * 109.47139 * 299.99618 * 3 2 1 30 30 H 0.96992 * 120.00187 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47269 * 330.00655 * 13 4 3 32 32 H 1.09002 * 109.47164 * 209.99784 * 13 4 3 33 33 H 1.09002 * 110.51094 * 23.89486 * 16 14 13 34 34 H 1.09003 * 110.51016 * 261.19503 * 16 14 13 35 35 H 1.08994 * 110.57312 * 240.74456 * 17 16 14 36 36 H 1.08994 * 110.57249 * 117.87159 * 17 16 14 37 37 H 1.09000 * 113.65657 * 332.16786 * 19 18 17 38 38 H 1.08997 * 113.65565 * 103.21009 * 19 18 17 39 39 H 1.09001 * 113.58474 * 270.12308 * 20 19 18 40 40 H 1.08993 * 113.58645 * 139.30716 * 20 19 18 41 41 H 1.08998 * 113.65670 * 256.81386 * 21 18 17 42 42 H 1.08993 * 113.65769 * 27.86363 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.4329 1.1868 6 1 3.7869 1.9485 2.0463 7 6 5.3996 0.7608 1.2844 8 7 5.6781 -0.2181 0.4497 9 14 6.6337 1.2454 2.6003 10 1 6.0196 1.0750 3.9417 11 1 7.8363 0.3808 2.4937 12 1 7.0260 2.6653 2.4123 13 6 4.2380 1.4527 -1.2678 14 6 4.4932 2.8987 -1.6978 15 1 5.0490 3.4303 -0.9254 16 6 5.2668 2.9327 -3.0351 17 6 4.6561 4.1355 -3.7927 18 6 3.5823 4.6653 -2.8313 19 6 2.4047 5.3816 -3.4909 20 6 2.4362 6.3510 -2.2952 21 6 3.9208 5.9791 -2.1278 22 8 3.2417 3.5697 -1.9718 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.5238 -0.6880 0.5181 31 1 3.6492 0.9450 -2.0318 32 1 5.1904 0.9379 -1.1412 33 1 5.1072 2.0095 -3.5922 34 1 6.3302 3.0934 -2.8571 35 1 4.2040 3.8088 -4.7291 36 1 5.4140 4.8968 -3.9772 37 1 2.6557 5.8516 -4.4419 38 1 1.4984 4.7783 -3.5412 39 1 1.8106 6.0345 -1.4606 40 1 2.2762 7.3925 -2.5738 41 1 4.2258 5.8530 -1.0890 42 1 4.5982 6.6171 -2.6952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712535768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:01 Heat of formation + Delta-G solvation = -32.309324 kcal Electronic energy + Delta-G solvation = -20106.813642 eV Core-core repulsion = 17280.079638 eV Total energy + Delta-G solvation = -2826.734004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.32507 -38.23538 -36.69867 -34.60699 -33.04262 -32.52512 -29.94196 -27.31966 -26.75489 -26.13384 -23.96677 -22.79960 -22.01068 -21.39762 -20.09502 -18.68442 -17.33960 -16.79008 -16.58925 -16.06993 -15.86685 -15.58602 -15.39546 -14.84304 -14.46431 -14.21386 -13.80995 -13.64131 -13.23725 -13.19837 -12.89489 -12.70476 -12.64020 -12.57164 -12.42414 -12.12162 -11.95957 -11.91518 -11.81627 -11.72794 -11.49640 -11.31398 -11.22333 -10.95903 -10.53252 -10.32082 -8.58221 -7.83120 -5.38597 1.43972 1.46028 1.53273 2.50654 2.95655 3.21070 3.61239 3.68539 3.72109 3.93551 3.95289 4.14840 4.23530 4.26883 4.32247 4.44359 4.54213 4.63965 4.67888 4.80346 4.82550 4.85814 4.86721 4.95252 4.99332 5.04228 5.04767 5.13656 5.21331 5.22901 5.26726 5.26936 5.44107 5.45123 5.49149 5.59731 5.64192 5.77517 6.30759 6.45463 7.16434 7.87836 8.41458 9.13913 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.008057 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.341586 B = 3474.582288 C = 4373.006391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.131 4.131 3 C 0.155 3.845 4 N -0.596 5.596 5 C -0.264 4.264 6 H 0.050 0.950 7 C -0.037 4.037 8 N -0.916 5.916 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.281 1.281 13 C 0.158 3.842 14 C 0.071 3.929 15 H 0.033 0.967 16 C -0.147 4.147 17 C -0.127 4.127 18 C 0.056 3.944 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.157 4.157 22 O -0.361 6.361 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.253 0.747 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 10.275 -9.481 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.029 3.971 4 N -0.315 5.315 5 C -0.394 4.394 6 H 0.068 0.932 7 C -0.234 4.234 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.208 1.208 13 C 0.031 3.969 14 C 0.012 3.988 15 H 0.051 0.949 16 C -0.185 4.185 17 C -0.165 4.165 18 C 0.016 3.984 19 C -0.155 4.155 20 C -0.167 4.167 21 C -0.195 4.195 22 O -0.280 6.280 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.408 10.100 -9.389 14.477 hybrid contribution 1.085 -0.257 1.037 1.522 sum -3.324 9.843 -8.352 13.330 Atomic orbital electron populations 1.21646 0.94120 1.01700 1.01858 1.21937 0.96236 0.99380 0.99538 1.20935 0.83797 0.93877 0.98494 1.43964 1.00732 1.84967 1.01859 1.19225 1.03552 1.25606 0.91042 0.93211 1.25668 1.02024 0.95326 1.00371 1.70080 1.23888 1.20908 1.41184 0.85569 0.78928 0.77655 0.79736 1.20336 1.21430 1.20774 1.20977 0.98797 0.91426 0.85706 1.23618 0.84367 0.95580 0.95283 0.94938 1.22937 1.00127 0.99766 0.95700 1.22724 0.97956 0.97228 0.98551 1.22994 0.96566 0.87784 0.91040 1.22929 0.97031 0.96789 0.98712 1.22749 0.95659 1.00188 0.98146 1.23387 0.98312 0.97260 1.00553 1.88979 1.29328 1.41847 1.67842 0.92171 0.92272 0.92571 0.94726 0.95066 0.95043 0.93288 0.93806 0.95821 0.89831 0.91060 0.90681 0.89544 0.88871 0.86324 0.91602 0.91992 0.89114 0.93663 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.91 71.98 0.71 -3.61 16 2 C -0.13 -5.58 6.26 30.59 0.19 -5.38 16 3 C 0.15 7.13 5.49 86.38 0.47 7.61 16 4 N -0.60 -31.35 2.42 -701.98 -1.70 -33.05 16 5 C -0.26 -15.05 9.48 84.03 0.80 -14.25 16 6 H 0.05 2.88 7.93 -2.91 -0.02 2.85 16 7 C -0.04 -2.09 4.94 84.86 0.42 -1.67 16 8 N -0.92 -53.69 11.34 21.65 0.25 -53.44 16 9 Si 0.95 45.33 29.61 68.60 2.03 47.36 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.16 7.77 4.92 86.38 0.42 8.20 16 14 C 0.07 3.00 3.55 31.12 0.11 3.11 16 15 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 16 C -0.15 -4.84 6.64 31.70 0.21 -4.63 16 17 C -0.13 -3.29 6.48 31.37 0.20 -3.09 16 18 C 0.06 1.66 1.13 -10.74 -0.01 1.65 16 19 C -0.12 -2.72 7.61 30.85 0.23 -2.49 16 20 C -0.13 -3.08 8.09 31.23 0.25 -2.83 16 21 C -0.16 -4.19 7.57 30.86 0.23 -3.96 16 22 O -0.36 -14.42 10.02 -148.98 -1.49 -15.91 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 29 H 0.05 2.18 7.17 -2.39 -0.02 2.16 16 30 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 32 H 0.08 4.61 5.33 -2.39 -0.01 4.60 16 33 H 0.07 2.33 7.87 -2.39 -0.02 2.31 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 36 H 0.09 1.96 7.84 -2.39 -0.02 1.95 16 37 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.11 2.27 7.97 -2.39 -0.02 2.25 16 Total: -1.00 -63.81 331.13 4.29 -59.52 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.95 Total: 16.86 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.25 Total: -21.34 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.45 Total: -86.49 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.49 Total: -15.91 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -63.81 4.29 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712535768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.211 kcal (2) G-P(sol) polarization free energy of solvation -63.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds