Wall clock time and date at job start Mon Mar 30 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47003 * 2 1 4 4 N 1.46500 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00085 * 269.58293 * 4 3 2 6 6 H 1.08008 * 119.99716 * 325.91140 * 5 4 3 7 7 C 1.38810 * 120.00394 * 145.90966 * 5 4 3 8 8 N 1.31620 * 120.00116 * 336.97057 * 7 5 4 9 9 Si 1.86800 * 119.99900 * 156.96309 * 7 5 4 10 10 H 1.48498 * 109.46788 * 90.00551 * 9 7 5 11 11 H 1.48502 * 109.47069 * 210.00273 * 9 7 5 12 12 H 1.48493 * 109.47341 * 330.00540 * 9 7 5 13 13 C 1.46500 * 120.00119 * 89.58452 * 4 3 2 14 14 C 1.53003 * 109.47328 * 90.00074 * 13 4 3 15 15 H 1.09004 * 110.28985 * 305.70201 * 14 13 4 16 16 C 1.54544 * 110.33493 * 183.54997 * 14 13 4 17 17 C 1.54715 * 104.06780 * 217.44790 * 16 14 13 18 18 C 1.53551 * 103.75945 * 0.69589 * 17 16 14 19 19 C 1.52815 * 115.46600 * 253.20959 * 18 17 16 20 20 C 1.53958 * 86.78961 * 217.65523 * 19 18 17 21 21 C 1.52797 * 115.49016 * 152.49551 * 18 17 16 22 22 O 1.43444 * 106.19539 * 22.75496 * 18 17 16 23 23 H 1.08996 * 109.47179 * 60.00271 * 1 2 3 24 24 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47102 * 300.00322 * 1 2 3 26 26 H 1.09004 * 109.47188 * 119.99385 * 2 1 3 27 27 H 1.08996 * 109.47398 * 239.99493 * 2 1 3 28 28 H 1.09004 * 109.46927 * 299.99246 * 3 2 1 29 29 H 1.09003 * 109.47454 * 59.99893 * 3 2 1 30 30 H 0.96993 * 120.00220 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46901 * 209.99535 * 13 4 3 32 32 H 1.08994 * 109.47403 * 329.99824 * 13 4 3 33 33 H 1.08997 * 110.50632 * 336.09443 * 16 14 13 34 34 H 1.09000 * 110.50653 * 98.66315 * 16 14 13 35 35 H 1.09005 * 110.56966 * 119.26497 * 17 16 14 36 36 H 1.08999 * 110.56805 * 241.97832 * 17 16 14 37 37 H 1.08997 * 113.65915 * 332.13010 * 19 18 17 38 38 H 1.08997 * 113.66389 * 103.17999 * 19 18 17 39 39 H 1.08997 * 113.58367 * 270.12137 * 20 19 18 40 40 H 1.08994 * 113.65717 * 139.31364 * 20 19 18 41 41 H 1.08998 * 113.66462 * 256.80070 * 21 18 17 42 42 H 1.09005 * 113.65898 * 27.84832 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4509 1.1850 6 1 3.7897 1.9813 2.0364 7 6 5.3995 0.7778 1.2926 8 7 5.6780 -0.2108 0.4696 9 14 6.6317 1.2754 2.6055 10 1 6.3739 0.5000 3.8455 11 1 8.0082 0.9956 2.1239 12 1 6.4924 2.7260 2.8908 13 6 4.2370 1.4334 -1.2696 14 6 4.4919 2.8728 -1.7217 15 1 3.5546 3.4278 -1.7623 16 6 5.1850 2.8871 -3.1029 17 6 6.1828 4.0658 -3.0107 18 6 5.9827 4.6033 -1.5864 19 6 5.2416 5.9359 -1.4850 20 6 6.2060 6.2860 -0.3370 21 6 7.1981 5.2907 -0.9661 22 8 5.4227 3.5233 -0.8263 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9564 0.8900 30 1 6.5231 -0.6809 0.5446 31 1 5.1896 0.9205 -1.1359 32 1 3.6477 0.9142 -2.0253 33 1 5.7152 1.9503 -3.2738 34 1 4.4560 3.0620 -3.8941 35 1 7.2054 3.7136 -3.1470 36 1 5.9411 4.8308 -3.7486 37 1 5.3593 6.5698 -2.3638 38 1 4.2033 5.8361 -1.1689 39 1 5.8447 5.9799 0.6447 40 1 6.5529 7.3190 -0.3569 41 1 7.7232 4.6755 -0.2354 42 1 7.8662 5.7432 -1.6990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712535772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:09 Heat of formation + Delta-G solvation = -13.589156 kcal Electronic energy + Delta-G solvation = -20228.578216 eV Core-core repulsion = 17402.655980 eV Total energy + Delta-G solvation = -2825.922236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91169 -36.51218 -35.13863 -32.70589 -31.52426 -30.61572 -28.31502 -25.53947 -25.40813 -24.59500 -22.32931 -21.32753 -20.46845 -19.56857 -18.74965 -16.72779 -15.62532 -15.33267 -14.81303 -14.62052 -14.16741 -14.02621 -13.59681 -13.16947 -12.93817 -12.69736 -12.52444 -12.09652 -11.86396 -11.41205 -11.28764 -11.09284 -10.99893 -10.83458 -10.60946 -10.58698 -10.55902 -10.25404 -10.20232 -9.96092 -9.91236 -9.63229 -9.61071 -9.53485 -8.76363 -8.31387 -6.46331 -5.62293 -3.13582 3.48455 3.55321 3.62786 4.37426 4.65877 4.88929 4.91803 5.11260 5.21661 5.36068 5.51309 5.53859 5.60331 5.67150 5.79943 5.85520 5.89479 5.92649 6.00366 6.07629 6.14359 6.17573 6.24954 6.28368 6.34884 6.44220 6.53457 6.54369 6.61562 6.67716 6.67977 6.71385 6.85604 6.90875 7.12109 7.33361 7.75466 7.93095 7.97404 8.66582 9.33542 9.99387 10.53059 11.39250 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.009083 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.205377 B = 3082.003615 C = 4029.165629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.237 4.237 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.146 3.854 14 C 0.064 3.936 15 H 0.045 0.955 16 C -0.150 4.150 17 C -0.136 4.136 18 C 0.075 3.925 19 C -0.156 4.156 20 C -0.133 4.133 21 C -0.131 4.131 22 O -0.307 6.307 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.251 0.749 31 H 0.109 0.891 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 8.415 -6.876 10.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.367 4.367 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.019 3.981 14 C 0.004 3.996 15 H 0.063 0.937 16 C -0.189 4.189 17 C -0.174 4.174 18 C 0.034 3.966 19 C -0.194 4.194 20 C -0.171 4.171 21 C -0.169 4.169 22 O -0.225 6.225 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.457 8.243 -6.635 10.682 hybrid contribution 0.637 0.278 0.348 0.778 sum -0.820 8.521 -6.287 10.621 Atomic orbital electron populations 1.21760 0.97919 1.00217 1.00598 1.22112 0.92900 1.01037 1.02039 1.20931 0.85667 0.93288 0.97961 1.43783 0.99072 1.84743 1.02306 1.18874 1.02674 1.24784 0.90327 0.92622 1.24892 1.00289 0.95133 0.97951 1.69946 1.23565 1.20082 1.40129 0.86440 0.81240 0.78710 0.81230 1.21936 1.21774 1.20355 1.21109 1.00674 0.90078 0.86269 1.23946 0.90816 0.98246 0.86637 0.93710 1.22996 0.98366 0.98825 0.98712 1.22698 1.00096 0.97883 0.96709 1.22602 0.94620 0.88737 0.90662 1.23314 0.99792 0.97590 0.98706 1.22783 0.97165 0.98255 0.98872 1.22875 0.96076 0.97669 1.00246 1.89312 1.57498 1.41247 1.34435 0.93767 0.93960 0.93462 0.91869 0.93165 0.95282 0.94096 0.93925 0.87367 0.94694 0.90830 0.91796 0.91192 0.91532 0.90257 0.91101 0.89739 0.92095 0.90620 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.14 -2.83 6.26 -26.73 -0.17 -2.99 16 3 C 0.15 3.18 5.67 -4.04 -0.02 3.16 16 4 N -0.58 -14.59 2.45 -173.23 -0.42 -15.02 16 5 C -0.24 -6.62 9.15 -15.06 -0.14 -6.76 16 6 H 0.06 1.59 7.93 -52.48 -0.42 1.17 16 7 C 0.02 0.46 4.95 -17.43 -0.09 0.37 16 8 N -0.89 -26.11 11.33 55.49 0.63 -25.48 16 9 Si 0.89 22.78 29.61 -169.99 -5.03 17.75 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.15 3.44 4.92 -4.04 -0.02 3.42 16 14 C 0.06 1.31 3.53 -25.92 -0.09 1.22 16 15 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.15 -2.52 6.65 -25.02 -0.17 -2.69 16 17 C -0.14 -2.08 6.48 -25.54 -0.17 -2.24 16 18 C 0.07 1.30 1.13 -90.54 -0.10 1.20 16 19 C -0.16 -2.34 7.57 -26.33 -0.20 -2.54 16 20 C -0.13 -1.98 8.09 -25.74 -0.21 -2.19 16 21 C -0.13 -2.05 7.61 -26.33 -0.20 -2.25 16 22 O -0.31 -6.88 10.80 -35.23 -0.38 -7.26 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.11 2.94 5.32 -51.93 -0.28 2.67 16 32 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 37 H 0.08 0.99 7.97 -51.93 -0.41 0.58 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -29.80 332.66 -9.20 -39.01 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.81 Total: 0.24 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.20 Total: -14.25 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.20 Total: -40.49 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.38 Total: -7.26 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.80 -9.20 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712535772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.417 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds