Wall clock time and date at job start Mon Mar 30 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46943 * 2 1 4 4 N 1.46498 * 109.47094 * 185.81820 * 3 2 1 5 5 C 1.36938 * 119.99955 * 82.70949 * 4 3 2 6 6 H 1.08002 * 120.00030 * 171.10899 * 5 4 3 7 7 C 1.38819 * 119.99992 * 351.10332 * 5 4 3 8 8 N 1.31614 * 119.99913 * 1.62878 * 7 5 4 9 9 Si 1.86793 * 119.99784 * 181.62599 * 7 5 4 10 10 H 1.48503 * 109.47352 * 90.00555 * 9 7 5 11 11 H 1.48502 * 109.46918 * 210.00058 * 9 7 5 12 12 H 1.48498 * 109.47683 * 330.00129 * 9 7 5 13 13 C 1.46503 * 120.00286 * 262.70947 * 4 3 2 14 14 C 1.52992 * 109.47038 * 273.35018 * 13 4 3 15 15 H 1.08999 * 109.86855 * 302.72677 * 14 13 4 16 16 C 1.54100 * 109.87863 * 181.72470 * 14 13 4 17 17 C 1.54812 * 104.18703 * 238.39540 * 16 14 13 18 18 C 1.54991 * 102.12504 * 339.10079 * 17 16 14 19 19 H 1.09004 * 110.61840 * 278.54229 * 18 17 16 20 20 C 1.52998 * 110.62022 * 155.54171 * 18 17 16 21 21 C 1.52998 * 117.50119 * 248.61830 * 20 18 17 22 22 C 1.52998 * 60.00152 * 252.51303 * 21 20 18 23 23 O 1.43742 * 110.00456 * 63.81585 * 14 13 4 24 24 H 1.08998 * 109.46634 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47117 * 300.00475 * 1 2 3 26 26 H 1.08998 * 109.46649 * 60.00654 * 1 2 3 27 27 H 1.08996 * 109.47117 * 239.99525 * 2 1 3 28 28 H 1.09003 * 109.47067 * 119.99546 * 2 1 3 29 29 H 1.08997 * 109.47342 * 65.81888 * 3 2 1 30 30 H 1.09004 * 109.46957 * 305.81631 * 3 2 1 31 31 H 0.96997 * 120.00197 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47160 * 153.34233 * 13 4 3 33 33 H 1.09004 * 109.46740 * 33.35161 * 13 4 3 34 34 H 1.08997 * 110.49231 * 119.71985 * 16 14 13 35 35 H 1.09005 * 110.60118 * 357.12585 * 16 14 13 36 36 H 1.09002 * 110.90722 * 97.31612 * 17 16 14 37 37 H 1.08999 * 110.90595 * 220.88422 * 17 16 14 38 38 H 1.09003 * 115.55092 * 34.33366 * 20 18 17 39 39 H 1.09001 * 117.49440 * 0.02562 * 21 20 18 40 40 H 1.08998 * 117.49800 * 145.01496 * 21 20 18 41 41 H 1.09000 * 117.49422 * 252.50882 * 22 21 20 42 42 H 1.08997 * 117.50025 * 107.49248 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4983 1.4449 -0.1400 5 6 4.0672 1.3354 -1.3808 6 1 5.1305 1.4805 -1.5021 7 6 3.2771 1.0376 -2.4828 8 7 1.9768 0.8923 -2.3402 9 14 4.0596 0.8434 -4.1678 10 1 4.4462 -0.5756 -4.3735 11 1 3.0873 1.2482 -5.2146 12 1 5.2673 1.7031 -4.2549 13 6 4.3480 1.5645 1.0474 14 6 4.5600 3.0436 1.3759 15 1 4.9982 3.5545 0.5185 16 6 5.4882 3.1811 2.5983 17 6 4.6449 3.9717 3.6281 18 6 3.5859 4.6548 2.7258 19 1 3.9951 5.5554 2.2679 20 6 2.3248 4.9818 3.5280 21 6 1.0547 4.1945 3.1998 22 6 1.1727 5.6628 2.7865 23 8 3.3058 3.6554 1.7208 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.7643 1.9254 0.9375 30 1 1.5941 1.9855 -0.8334 31 1 1.4248 0.6839 -3.1101 32 1 5.3117 1.0936 0.8534 33 1 3.8655 1.0704 1.8907 34 1 6.3874 3.7375 2.3339 35 1 5.7504 2.1995 2.9931 36 1 4.1713 3.2981 4.3422 37 1 5.2551 4.7143 4.1423 38 1 2.4890 5.2619 4.5686 39 1 1.1177 3.4431 2.4126 40 1 0.3832 3.9560 4.0245 41 1 0.5786 6.3905 3.3394 42 1 1.3131 5.8778 1.7272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715404697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:29 Heat of formation + Delta-G solvation = -10.061185 kcal Electronic energy + Delta-G solvation = -20149.591355 eV Core-core repulsion = 17323.822103 eV Total energy + Delta-G solvation = -2825.769252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64040 -38.09841 -37.16294 -33.70488 -33.30452 -32.84708 -30.39840 -27.29089 -26.93403 -24.22326 -23.23930 -22.74857 -21.95271 -21.36335 -21.04063 -18.67180 -17.44257 -16.94133 -16.69670 -16.23389 -15.70969 -15.50120 -15.04867 -14.71856 -14.54418 -14.29827 -13.76315 -13.21269 -13.13474 -12.92055 -12.67087 -12.64132 -12.45645 -12.31448 -12.22661 -12.09395 -11.98965 -11.78554 -11.67461 -11.54188 -11.37877 -11.19563 -11.02009 -10.93540 -10.36988 -10.16910 -8.62396 -7.54541 -5.05898 1.49382 1.49566 1.57429 2.56833 2.88540 3.08547 3.42359 3.62836 3.81661 3.88284 4.08971 4.12004 4.16059 4.27360 4.45711 4.56161 4.58767 4.60899 4.72920 4.73734 4.84045 4.87364 4.95950 4.99369 5.01653 5.05416 5.10618 5.18802 5.26808 5.30117 5.32753 5.37307 5.47830 5.61759 5.65807 5.69506 6.06763 6.31931 6.33504 6.55304 7.34714 8.05604 8.45211 9.32928 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.007095 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.666742 B = 3945.413634 C = 4567.801731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C 0.196 3.804 4 N -0.615 5.615 5 C -0.250 4.250 6 H 0.070 0.930 7 C -0.060 4.060 8 N -0.916 5.916 9 Si 0.965 3.035 10 H -0.290 1.290 11 H -0.298 1.298 12 H -0.278 1.278 13 C 0.154 3.846 14 C 0.060 3.940 15 H 0.034 0.966 16 C -0.143 4.143 17 C -0.132 4.132 18 C 0.086 3.914 19 H 0.062 0.938 20 C -0.145 4.145 21 C -0.176 4.176 22 C -0.176 4.176 23 O -0.377 6.377 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.005 0.995 29 H 0.010 0.990 30 H 0.060 0.940 31 H 0.239 0.761 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 6.803 13.537 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.071 3.929 4 N -0.336 5.336 5 C -0.380 4.380 6 H 0.088 0.912 7 C -0.253 4.253 8 N -0.566 5.566 9 Si 0.796 3.204 10 H -0.218 1.218 11 H -0.225 1.225 12 H -0.203 1.203 13 C 0.027 3.973 14 C -0.001 4.001 15 H 0.052 0.948 16 C -0.182 4.182 17 C -0.169 4.169 18 C 0.029 3.971 19 H 0.080 0.920 20 C -0.163 4.163 21 C -0.213 4.213 22 C -0.213 4.213 23 O -0.297 6.297 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.028 0.972 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.157 0.843 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.203 6.716 13.304 15.065 hybrid contribution 0.443 -0.226 -1.380 1.467 sum 2.647 6.490 11.924 13.831 Atomic orbital electron populations 1.21433 0.96480 0.99809 1.00118 1.22033 0.94911 0.99701 0.97910 1.20681 0.81954 0.94235 0.96034 1.44272 1.02414 1.85090 1.01842 1.19596 0.92854 1.39681 0.85894 0.91204 1.25473 0.96505 1.02542 1.00819 1.70488 1.03566 1.54916 1.27603 0.85281 0.77115 0.77341 0.80697 1.21777 1.22509 1.20322 1.21067 0.94641 0.92660 0.88916 1.23461 0.84434 0.96092 0.96083 0.94758 1.22931 0.98549 1.02117 0.94574 1.23044 0.96624 0.99733 0.97540 1.22792 0.94410 0.91669 0.88231 0.91976 1.22394 0.88543 1.05302 1.00016 1.22813 1.00005 0.94880 1.03554 1.22940 1.02238 0.95824 1.00272 1.89019 1.29320 1.52595 1.58777 0.93696 0.93738 0.94056 0.92245 0.97671 0.97155 0.92151 0.95072 0.92107 0.93993 0.89843 0.89737 0.90315 0.88045 0.84333 0.90823 0.87520 0.86646 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.91 71.98 0.71 -4.37 16 2 C -0.11 -5.23 5.33 30.60 0.16 -5.07 16 3 C 0.20 10.18 4.72 86.38 0.41 10.59 16 4 N -0.62 -31.83 2.52 -702.00 -1.77 -33.60 16 5 C -0.25 -13.93 9.76 84.04 0.82 -13.11 16 6 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 7 C -0.06 -3.37 5.19 84.86 0.44 -2.93 16 8 N -0.92 -52.81 7.26 21.65 0.16 -52.65 16 9 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.15 6.48 5.15 86.38 0.45 6.93 16 14 C 0.06 2.20 3.67 30.96 0.11 2.32 16 15 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 16 C -0.14 -3.70 6.64 31.58 0.21 -3.50 16 17 C -0.13 -2.94 6.58 31.89 0.21 -2.73 16 18 C 0.09 2.43 3.70 31.27 0.12 2.55 16 19 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 20 C -0.14 -3.52 5.73 -10.79 -0.06 -3.59 16 21 C -0.18 -4.93 9.90 30.59 0.30 -4.62 16 22 C -0.18 -4.46 10.25 30.59 0.31 -4.15 16 23 O -0.38 -14.50 8.00 -148.98 -1.19 -15.69 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 3.35 6.01 -2.39 -0.01 3.33 16 28 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.01 0.52 6.29 -2.39 -0.02 0.51 16 30 H 0.06 3.58 5.92 -2.38 -0.01 3.57 16 31 H 0.24 13.59 8.31 -92.71 -0.77 12.82 16 32 H 0.06 2.43 8.01 -2.39 -0.02 2.42 16 33 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.02 7.70 -2.38 -0.02 2.00 16 36 H 0.08 1.71 8.06 -2.39 -0.02 1.69 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.07 2.69 6.37 -2.39 -0.02 2.67 16 40 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -62.91 325.48 4.37 -58.54 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.96 Total: 16.93 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.19 Total: -21.67 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.62 Total: -86.25 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.19 Total: -15.69 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -62.91 4.37 -58.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715404697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.474 kcal (2) G-P(sol) polarization free energy of solvation -62.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds