Wall clock time and date at job start Mon Mar 30 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47135 * 2 1 4 4 N 1.46503 * 109.46636 * 120.00101 * 2 1 3 5 5 C 1.36929 * 120.00662 * 62.81081 * 4 2 1 6 6 H 1.07998 * 120.00468 * 200.29873 * 5 4 2 7 7 C 1.38813 * 119.99824 * 20.30168 * 5 4 2 8 8 N 1.31625 * 120.00209 * 24.27774 * 7 5 4 9 9 Si 1.86801 * 120.00347 * 204.27811 * 7 5 4 10 10 H 1.48505 * 109.46773 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47220 * 119.99741 * 9 7 5 12 12 H 1.48497 * 109.47310 * 239.99923 * 9 7 5 13 13 C 1.46507 * 119.99673 * 242.80720 * 4 2 1 14 14 C 1.53002 * 109.46809 * 96.46736 * 13 4 2 15 15 H 1.08996 * 110.27491 * 56.39146 * 14 13 4 16 16 C 1.54947 * 110.30635 * 178.48447 * 14 13 4 17 17 C 1.55416 * 100.89216 * 155.28940 * 16 14 13 18 18 C 1.54385 * 102.30905 * 325.98842 * 17 16 14 19 19 H 1.09000 * 109.90332 * 261.72903 * 18 17 16 20 20 C 1.53000 * 109.83209 * 140.80157 * 18 17 16 21 21 C 1.52998 * 117.49723 * 249.03306 * 20 18 17 22 22 C 1.52998 * 60.00033 * 252.51106 * 21 20 18 23 23 O 1.43233 * 107.58833 * 21.28562 * 18 17 16 24 24 H 1.08997 * 109.47311 * 56.40146 * 1 2 3 25 25 H 1.09007 * 109.47519 * 176.40496 * 1 2 3 26 26 H 1.08999 * 109.47183 * 296.40521 * 1 2 3 27 27 H 1.09000 * 109.46656 * 239.99472 * 2 1 3 28 28 H 1.09000 * 109.47779 * 60.00160 * 3 2 1 29 29 H 1.09001 * 109.46880 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47279 * 299.99558 * 3 2 1 31 31 H 0.96995 * 120.00187 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47163 * 216.46546 * 13 4 2 33 33 H 1.08995 * 109.46838 * 336.47018 * 13 4 2 34 34 H 1.09007 * 111.12296 * 273.27514 * 16 14 13 35 35 H 1.08995 * 111.12990 * 37.43860 * 16 14 13 36 36 H 1.08996 * 110.88151 * 207.75012 * 17 16 14 37 37 H 1.08999 * 110.93661 * 84.24533 * 17 16 14 38 38 H 1.08997 * 115.54683 * 34.73995 * 20 18 17 39 39 H 1.09000 * 117.49808 * 0.02562 * 21 20 18 40 40 H 1.09000 * 117.49686 * 145.01311 * 21 20 18 41 41 H 1.08997 * 117.49744 * 252.51291 * 22 21 20 42 42 H 1.08999 * 117.50095 * 107.49120 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.7356 -2.0172 1.3843 6 1 1.7941 -2.4469 2.3734 7 6 1.3739 -2.8098 0.3037 8 7 1.7443 -2.4721 -0.9134 9 14 0.3613 -4.3557 0.5765 10 1 0.0767 -4.5115 2.0257 11 1 -0.9173 -4.2482 -0.1708 12 1 1.1203 -5.5365 0.0918 13 6 2.8090 0.0380 2.1913 14 6 1.8941 0.5114 3.3225 15 1 1.3670 -0.3357 3.7615 16 6 2.7177 1.2524 4.4058 17 6 1.6237 2.1566 5.0391 18 6 0.7279 2.4880 3.8262 19 1 0.9904 3.4681 3.4279 20 6 -0.7426 2.4764 4.2483 21 6 -1.6245 1.3502 3.7053 22 6 -1.7888 2.7750 3.1725 23 8 0.9561 1.4825 2.8320 24 1 -0.3634 0.5687 -0.8559 25 1 -0.3634 -1.0257 -0.0644 26 1 -0.3633 0.4570 0.9204 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.4912 -3.0257 -1.6686 32 1 3.5778 -0.6196 2.5968 33 1 3.2802 0.9005 1.7200 34 1 3.1236 0.5534 5.1372 35 1 3.5095 1.8513 3.9561 36 1 2.0624 3.0628 5.4565 37 1 1.0619 1.6139 5.7993 38 1 -0.9444 2.8314 5.2589 39 1 -1.1570 0.6174 3.0477 40 1 -2.4067 0.9639 4.3589 41 1 -2.6790 3.3261 3.4755 42 1 -1.4294 2.9798 2.1641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715414405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:39 Heat of formation + Delta-G solvation = -1.056583 kcal Electronic energy + Delta-G solvation = -20653.116835 eV Core-core repulsion = 17827.738052 eV Total energy + Delta-G solvation = -2825.378783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.49414 -36.68709 -35.68028 -31.79568 -31.65718 -30.93801 -28.55526 -26.37856 -24.85530 -23.25667 -22.11542 -21.65319 -20.88114 -19.56528 -18.83060 -16.64989 -16.37721 -15.61322 -14.86038 -14.66178 -14.41733 -13.95552 -13.53795 -13.14181 -12.84681 -12.30512 -12.20462 -11.74044 -11.52086 -11.36147 -11.23458 -11.08930 -11.05160 -10.91537 -10.72668 -10.69520 -10.50678 -10.27995 -10.15356 -9.90657 -9.74758 -9.52240 -9.45356 -9.27163 -8.80265 -8.43021 -6.58210 -5.50943 -3.03815 3.44208 3.53128 3.54569 4.04189 4.26570 4.60955 4.80641 4.91389 5.10411 5.23456 5.27077 5.38115 5.50107 5.58139 5.71637 5.77444 5.81533 5.91463 5.94249 6.08941 6.16722 6.23923 6.30978 6.37354 6.41315 6.49033 6.55609 6.63161 6.64855 6.75870 6.94705 7.01190 7.13560 7.23492 7.27576 7.72131 7.76885 7.94675 8.19124 8.58944 9.37561 10.04371 10.52325 11.39460 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.007684 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.872250 B = 3642.982611 C = 3808.582639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 C -0.161 4.161 4 N -0.579 5.579 5 C -0.243 4.243 6 H 0.064 0.936 7 C 0.002 3.998 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.294 1.294 13 C 0.144 3.856 14 C 0.064 3.936 15 H 0.063 0.937 16 C -0.152 4.152 17 C -0.145 4.145 18 C 0.105 3.895 19 H 0.072 0.928 20 C -0.173 4.173 21 C -0.165 4.165 22 C -0.176 4.176 23 O -0.346 6.346 24 H 0.019 0.981 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.249 0.751 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 10.529 9.414 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.063 3.937 3 C -0.219 4.219 4 N -0.300 5.300 5 C -0.373 4.373 6 H 0.082 0.918 7 C -0.196 4.196 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.221 1.221 13 C 0.016 3.984 14 C 0.004 3.996 15 H 0.081 0.919 16 C -0.191 4.191 17 C -0.183 4.183 18 C 0.046 3.954 19 H 0.090 0.910 20 C -0.191 4.191 21 C -0.202 4.202 22 C -0.213 4.213 23 O -0.265 6.265 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.601 10.426 9.030 13.886 hybrid contribution -0.727 -0.800 0.483 1.184 sum -2.328 9.626 9.514 13.733 Atomic orbital electron populations 1.21985 0.99402 1.00379 0.98029 1.20647 0.91642 0.88824 0.92575 1.22279 0.99387 0.99401 1.00791 1.43961 1.58904 1.06399 1.20712 1.19063 1.40380 0.85156 0.92709 0.91804 1.24688 1.02037 0.97500 0.95409 1.69916 1.46496 1.38853 0.98452 0.86419 0.80675 0.83458 0.77520 1.20513 1.21736 1.22134 1.21013 0.91836 0.95770 0.89770 1.23941 0.89976 0.90573 0.95093 0.91897 1.23313 0.98207 0.98804 0.98753 1.23091 0.97080 1.00043 0.98101 1.22099 0.91618 0.92973 0.88678 0.90979 1.22743 0.92687 1.05845 0.97842 1.22931 1.01188 0.92400 1.03651 1.22844 0.99828 0.99651 0.98943 1.88555 1.63745 1.36781 1.37428 0.96217 0.93147 0.93991 0.88398 0.91618 0.94369 0.94534 0.94005 0.93133 0.92777 0.90711 0.90864 0.91039 0.90959 0.88176 0.86765 0.89970 0.89792 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.06 37.16 0.34 -2.94 16 2 C 0.17 4.06 2.87 -67.93 -0.19 3.87 16 3 C -0.16 -3.29 7.85 37.15 0.29 -3.00 16 4 N -0.58 -14.21 2.65 -165.67 -0.44 -14.65 16 5 C -0.24 -6.60 9.19 -15.06 -0.14 -6.74 16 6 H 0.06 1.72 7.94 -52.49 -0.42 1.31 16 7 C 0.00 0.05 3.79 -17.43 -0.07 -0.02 16 8 N -0.89 -25.74 10.64 55.49 0.59 -25.15 16 9 Si 0.89 22.07 29.62 -169.99 -5.03 17.04 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 C 0.14 2.93 4.93 -4.04 -0.02 2.91 16 14 C 0.06 1.14 3.64 -25.70 -0.09 1.04 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.15 -2.07 6.58 -24.42 -0.16 -2.24 16 17 C -0.15 -1.78 6.54 -24.72 -0.16 -1.94 16 18 C 0.10 1.48 3.89 -26.01 -0.10 1.38 16 19 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.17 -2.31 5.56 -90.62 -0.50 -2.82 16 21 C -0.16 -2.47 9.88 -26.73 -0.26 -2.74 16 22 C -0.18 -2.39 10.21 -26.73 -0.27 -2.66 16 23 O -0.35 -6.11 6.04 -35.23 -0.21 -6.32 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.31 6.65 -51.92 -0.35 0.97 16 26 H 0.04 0.96 6.91 -51.93 -0.36 0.60 16 27 H 0.10 2.74 5.59 -51.93 -0.29 2.45 16 28 H 0.07 1.30 5.28 -51.93 -0.27 1.03 16 29 H 0.04 0.76 7.08 -51.93 -0.37 0.39 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.05 1.06 5.44 -51.93 -0.28 0.78 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 38 H 0.10 1.17 8.12 -51.93 -0.42 0.75 16 39 H 0.11 2.10 6.60 -51.93 -0.34 1.76 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -28.51 319.44 -8.92 -37.42 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.29 Total: 2.72 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.35 Total: -15.88 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.15 Total: -39.80 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.21 Total: -6.32 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.51 -8.92 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715414405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.368 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds