Wall clock time and date at job start Mon Mar 30 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47135 * 2 1 4 4 N 1.46503 * 109.46636 * 120.00101 * 2 1 3 5 5 C 1.36929 * 120.00662 * 62.81081 * 4 2 1 6 6 H 1.07998 * 120.00468 * 200.29873 * 5 4 2 7 7 C 1.38813 * 119.99824 * 20.30168 * 5 4 2 8 8 N 1.31625 * 120.00209 * 24.27774 * 7 5 4 9 9 Si 1.86801 * 120.00347 * 204.27811 * 7 5 4 10 10 H 1.48505 * 109.46773 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47220 * 119.99741 * 9 7 5 12 12 H 1.48497 * 109.47310 * 239.99923 * 9 7 5 13 13 C 1.46507 * 119.99673 * 242.80720 * 4 2 1 14 14 C 1.53002 * 109.46809 * 96.46736 * 13 4 2 15 15 H 1.08996 * 110.27491 * 56.39146 * 14 13 4 16 16 C 1.54947 * 110.30635 * 178.48447 * 14 13 4 17 17 C 1.55416 * 100.89216 * 155.28940 * 16 14 13 18 18 C 1.54385 * 102.30905 * 325.98842 * 17 16 14 19 19 H 1.09000 * 109.90332 * 261.72903 * 18 17 16 20 20 C 1.53000 * 109.83209 * 140.80157 * 18 17 16 21 21 C 1.52998 * 117.49723 * 249.03306 * 20 18 17 22 22 C 1.52998 * 60.00033 * 252.51106 * 21 20 18 23 23 O 1.43233 * 107.58833 * 21.28562 * 18 17 16 24 24 H 1.08997 * 109.47311 * 56.40146 * 1 2 3 25 25 H 1.09007 * 109.47519 * 176.40496 * 1 2 3 26 26 H 1.08999 * 109.47183 * 296.40521 * 1 2 3 27 27 H 1.09000 * 109.46656 * 239.99472 * 2 1 3 28 28 H 1.09000 * 109.47779 * 60.00160 * 3 2 1 29 29 H 1.09001 * 109.46880 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47279 * 299.99558 * 3 2 1 31 31 H 0.96995 * 120.00187 * 180.02562 * 8 7 5 32 32 H 1.08991 * 109.47163 * 216.46546 * 13 4 2 33 33 H 1.08995 * 109.46838 * 336.47018 * 13 4 2 34 34 H 1.09007 * 111.12296 * 273.27514 * 16 14 13 35 35 H 1.08995 * 111.12990 * 37.43860 * 16 14 13 36 36 H 1.08996 * 110.88151 * 207.75012 * 17 16 14 37 37 H 1.08999 * 110.93661 * 84.24533 * 17 16 14 38 38 H 1.08997 * 115.54683 * 34.73995 * 20 18 17 39 39 H 1.09000 * 117.49808 * 0.02562 * 21 20 18 40 40 H 1.09000 * 117.49686 * 145.01311 * 21 20 18 41 41 H 1.08997 * 117.49744 * 252.51291 * 22 21 20 42 42 H 1.08999 * 117.50095 * 107.49120 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.7356 -2.0172 1.3843 6 1 1.7941 -2.4469 2.3734 7 6 1.3739 -2.8098 0.3037 8 7 1.7443 -2.4721 -0.9134 9 14 0.3613 -4.3557 0.5765 10 1 0.0767 -4.5115 2.0257 11 1 -0.9173 -4.2482 -0.1708 12 1 1.1203 -5.5365 0.0918 13 6 2.8090 0.0380 2.1913 14 6 1.8941 0.5114 3.3225 15 1 1.3670 -0.3357 3.7615 16 6 2.7177 1.2524 4.4058 17 6 1.6237 2.1566 5.0391 18 6 0.7279 2.4880 3.8262 19 1 0.9904 3.4681 3.4279 20 6 -0.7426 2.4764 4.2483 21 6 -1.6245 1.3502 3.7053 22 6 -1.7888 2.7750 3.1725 23 8 0.9561 1.4825 2.8320 24 1 -0.3634 0.5687 -0.8559 25 1 -0.3634 -1.0257 -0.0644 26 1 -0.3633 0.4570 0.9204 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.4912 -3.0257 -1.6686 32 1 3.5778 -0.6196 2.5968 33 1 3.2802 0.9005 1.7200 34 1 3.1236 0.5534 5.1372 35 1 3.5095 1.8513 3.9561 36 1 2.0624 3.0628 5.4565 37 1 1.0619 1.6139 5.7993 38 1 -0.9444 2.8314 5.2589 39 1 -1.1570 0.6174 3.0477 40 1 -2.4067 0.9639 4.3589 41 1 -2.6790 3.3261 3.4755 42 1 -1.4294 2.9798 2.1641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715414405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:36 Heat of formation + Delta-G solvation = -15.469078 kcal Electronic energy + Delta-G solvation = -20653.741808 eV Core-core repulsion = 17827.738052 eV Total energy + Delta-G solvation = -2826.003756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73449 -38.34168 -37.02911 -33.68526 -33.09178 -32.47838 -30.16469 -28.12556 -26.53187 -25.05362 -23.24372 -22.92631 -22.14284 -20.87268 -20.60561 -18.45699 -17.76420 -16.86848 -16.68474 -16.12279 -15.66335 -15.59238 -15.46242 -14.78208 -14.04295 -13.83740 -13.57327 -13.40498 -13.22588 -12.95765 -12.77962 -12.70905 -12.56609 -12.41037 -12.24656 -12.18555 -12.10306 -11.81943 -11.62366 -11.44017 -11.31490 -11.22854 -11.00665 -10.82229 -10.51582 -10.13355 -8.61746 -7.59654 -5.15407 1.42497 1.46917 1.54474 2.55560 2.94059 3.07604 3.34090 3.68406 3.75297 3.87171 4.08097 4.15546 4.21328 4.32517 4.48706 4.56410 4.61494 4.67343 4.71705 4.84460 4.85640 4.94765 4.97578 5.01395 5.03666 5.07973 5.12469 5.16535 5.24034 5.30835 5.33916 5.36355 5.41353 5.46808 5.55100 5.66242 5.90456 6.18260 6.50837 6.51814 7.29394 8.06166 8.47832 9.26268 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.007684 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.872250 B = 3642.982611 C = 3808.582639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.166 3.834 3 C -0.146 4.146 4 N -0.592 5.592 5 C -0.244 4.244 6 H 0.059 0.941 7 C -0.043 4.043 8 N -0.917 5.917 9 Si 0.939 3.061 10 H -0.273 1.273 11 H -0.297 1.297 12 H -0.294 1.294 13 C 0.140 3.860 14 C 0.071 3.929 15 H 0.033 0.967 16 C -0.144 4.144 17 C -0.134 4.134 18 C 0.093 3.907 19 H 0.083 0.917 20 C -0.160 4.160 21 C -0.183 4.183 22 C -0.170 4.170 23 O -0.368 6.368 24 H 0.033 0.967 25 H 0.016 0.984 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.244 0.756 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 12.584 11.411 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 C -0.204 4.204 4 N -0.313 5.313 5 C -0.375 4.375 6 H 0.077 0.923 7 C -0.239 4.239 8 N -0.564 5.564 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.224 1.224 12 H -0.221 1.221 13 C 0.014 3.986 14 C 0.011 3.989 15 H 0.051 0.949 16 C -0.182 4.182 17 C -0.172 4.172 18 C 0.035 3.965 19 H 0.101 0.899 20 C -0.178 4.178 21 C -0.220 4.220 22 C -0.206 4.206 23 O -0.287 6.287 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.594 12.500 11.064 16.769 hybrid contribution -0.719 -1.395 -0.124 1.574 sum -2.312 11.105 10.940 15.759 Atomic orbital electron populations 1.21813 0.99349 0.98410 0.98672 1.20495 0.91686 0.90584 0.91157 1.22106 0.99517 0.96831 1.01914 1.44141 1.59512 1.05955 1.21682 1.19255 1.39456 0.86458 0.92327 0.92335 1.25234 1.03324 0.99973 0.95382 1.70075 1.47756 1.39787 0.98828 0.85613 0.79053 0.80910 0.77478 1.19793 1.22429 1.22131 1.21184 0.92048 0.95600 0.89760 1.23550 0.89878 0.90586 0.94839 0.94901 1.23258 0.98358 0.98951 0.97610 1.23068 0.96008 1.00952 0.97135 1.22389 0.92615 0.92439 0.89074 0.89890 1.22865 0.92028 1.03941 0.98941 1.22779 1.02507 0.92477 1.04279 1.22873 1.00934 0.98423 0.98416 1.88525 1.63794 1.37317 1.39086 0.94808 0.96462 0.93768 0.92136 0.90735 0.93945 0.93097 0.94635 0.93564 0.91701 0.89500 0.89675 0.88006 0.90574 0.85501 0.90844 0.88696 0.87406 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 9.06 71.98 0.65 -5.29 16 2 C 0.17 8.14 2.87 44.99 0.13 8.27 16 3 C -0.15 -5.82 7.85 71.98 0.57 -5.25 16 4 N -0.59 -29.50 2.65 -678.05 -1.80 -31.30 16 5 C -0.24 -13.56 9.19 84.04 0.77 -12.79 16 6 H 0.06 3.24 7.94 -2.91 -0.02 3.22 16 7 C -0.04 -2.47 3.79 84.86 0.32 -2.15 16 8 N -0.92 -54.59 10.64 21.65 0.23 -54.36 16 9 Si 0.94 46.55 29.62 68.60 2.03 48.58 16 10 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 13 C 0.14 5.67 4.93 86.38 0.43 6.09 16 14 C 0.07 2.47 3.64 31.26 0.11 2.58 16 15 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 16 C -0.14 -3.49 6.58 32.09 0.21 -3.28 16 17 C -0.13 -2.76 6.54 31.90 0.21 -2.55 16 18 C 0.09 2.36 3.89 31.06 0.12 2.48 16 19 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.16 -3.83 5.56 -10.79 -0.06 -3.89 16 21 C -0.18 -5.35 9.88 30.59 0.30 -5.04 16 22 C -0.17 -4.27 10.21 30.59 0.31 -3.95 16 23 O -0.37 -12.55 6.04 -148.98 -0.90 -13.45 16 24 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.02 0.89 6.65 -2.38 -0.02 0.88 16 26 H 0.04 2.06 6.91 -2.39 -0.02 2.05 16 27 H 0.06 3.50 5.59 -2.39 -0.01 3.49 16 28 H 0.07 2.83 5.28 -2.39 -0.01 2.82 16 29 H 0.04 1.63 7.08 -2.39 -0.02 1.61 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.05 1.88 8.09 -2.39 -0.02 1.86 16 33 H 0.06 2.46 5.44 -2.39 -0.01 2.45 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.53 7.85 -2.39 -0.02 1.51 16 38 H 0.13 2.40 8.12 -2.39 -0.02 2.38 16 39 H 0.07 2.78 6.60 -2.39 -0.02 2.76 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -63.10 319.44 4.61 -58.49 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.97 Total: 16.82 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.07 Total: -24.78 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -1.57 Total: -85.66 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.90 Total: -13.45 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -63.10 4.61 -58.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715414405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.025 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds