Wall clock time and date at job start Mon Mar 30 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 N 1.46499 * 109.46659 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00045 * 269.76822 * 4 3 2 6 6 H 1.08001 * 120.00300 * 325.92646 * 5 4 3 7 7 C 1.38810 * 119.99960 * 145.92469 * 5 4 3 8 8 N 1.31621 * 120.00148 * 337.00154 * 7 5 4 9 9 Si 1.86796 * 120.00149 * 157.00741 * 7 5 4 10 10 H 1.48503 * 109.47406 * 89.99834 * 9 7 5 11 11 H 1.48505 * 109.47030 * 209.99863 * 9 7 5 12 12 H 1.48502 * 109.47052 * 329.99743 * 9 7 5 13 13 C 1.46502 * 119.99979 * 89.77472 * 4 3 2 14 14 C 1.53001 * 109.46985 * 89.99984 * 13 4 3 15 15 H 1.09004 * 110.42267 * 304.13513 * 14 13 4 16 16 C 1.54438 * 110.37386 * 181.82673 * 14 13 4 17 17 C 1.54271 * 104.16102 * 216.25367 * 16 14 13 18 18 H 1.08996 * 113.28839 * 238.63706 * 17 16 14 19 19 C 1.54658 * 108.82733 * 112.36647 * 17 16 14 20 20 C 1.54836 * 102.92383 * 211.69436 * 19 17 16 21 21 C 1.54200 * 104.20362 * 38.08716 * 20 19 17 22 22 C 1.53810 * 106.77229 * 336.02957 * 21 20 19 23 23 H 1.08996 * 111.85715 * 238.04610 * 22 21 20 24 24 O 1.44285 * 110.37776 * 66.45159 * 14 13 4 25 25 H 1.09000 * 109.46743 * 59.99954 * 1 2 3 26 26 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46806 * 300.00224 * 1 2 3 28 28 H 1.08998 * 109.46806 * 239.99776 * 2 1 3 29 29 H 1.09000 * 109.46743 * 120.00046 * 2 1 3 30 30 H 1.08999 * 109.47015 * 60.00473 * 3 2 1 31 31 H 1.08994 * 109.46933 * 300.00226 * 3 2 1 32 32 H 0.96998 * 120.00497 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47227 * 329.99464 * 13 4 3 34 34 H 1.08998 * 109.47257 * 209.99488 * 13 4 3 35 35 H 1.09002 * 110.49297 * 97.58116 * 16 14 13 36 36 H 1.09002 * 110.48716 * 334.92517 * 16 14 13 37 37 H 1.09003 * 110.72310 * 330.05053 * 19 17 16 38 38 H 1.08998 * 110.72043 * 93.33378 * 19 17 16 39 39 H 1.08999 * 110.48570 * 156.76694 * 20 19 17 40 40 H 1.09008 * 110.48515 * 279.27055 * 20 19 17 41 41 H 1.09001 * 110.00040 * 95.35505 * 21 20 19 42 42 H 1.08999 * 110.00181 * 216.65996 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4469 1.1850 6 1 3.7898 1.9743 2.0382 7 6 5.3996 0.7737 1.2903 8 7 5.6785 -0.2117 0.4635 9 14 6.6313 1.2661 2.6055 10 1 6.3733 0.4858 3.8424 11 1 8.0081 0.9884 2.1232 12 1 6.4917 2.7156 2.8966 13 6 4.2371 1.4375 -1.2697 14 6 4.4920 2.8783 -1.7169 15 1 3.5529 3.4278 -1.7831 16 6 5.2232 2.8977 -3.0771 17 6 6.1833 4.1007 -2.9723 18 1 6.0178 4.8526 -3.7438 19 6 7.6385 3.5774 -2.9494 20 6 8.3678 4.6204 -2.0676 21 6 7.3456 4.9653 -0.9657 22 6 5.9533 4.6464 -1.5364 23 1 5.3029 5.5210 -1.5322 24 8 5.3952 3.5355 -0.8036 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 6.5237 -0.6819 0.5368 33 1 3.6477 0.9208 -2.0271 34 1 5.1895 0.9242 -1.1378 35 1 4.5126 3.0462 -3.8902 36 1 5.7832 1.9739 -3.2223 37 1 7.6853 2.5878 -2.4948 38 1 8.0584 3.5614 -3.9551 39 1 9.2680 4.1881 -1.6309 40 1 8.6160 5.5068 -2.6515 41 1 7.5333 4.3585 -0.0799 42 1 7.4122 6.0236 -0.7134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720862967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:23 Heat of formation + Delta-G solvation = -59.542031 kcal Electronic energy + Delta-G solvation = -20241.824142 eV Core-core repulsion = 17413.909239 eV Total energy + Delta-G solvation = -2827.914902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00153 -37.96736 -36.02969 -34.51993 -33.21799 -32.21671 -29.52096 -28.54326 -27.26267 -25.95250 -23.58663 -22.33916 -21.71035 -20.97159 -20.69794 -18.68797 -17.62519 -16.91854 -16.45948 -16.07473 -15.83945 -15.55425 -15.11903 -14.78080 -14.54040 -14.26164 -13.96065 -13.38366 -13.30638 -13.04477 -12.72861 -12.65303 -12.50049 -12.38912 -12.20247 -12.03477 -11.93764 -11.83266 -11.77099 -11.60092 -11.52836 -11.44257 -11.29337 -11.21648 -10.43890 -10.30214 -8.51559 -7.75069 -5.29249 1.40468 1.44124 1.54695 2.55623 3.10040 3.34102 3.60731 3.66229 3.74963 4.04616 4.21997 4.27800 4.28995 4.37378 4.44221 4.49065 4.58064 4.61836 4.68535 4.77025 4.79399 4.83438 4.86670 4.95781 5.02062 5.03586 5.10073 5.14331 5.16228 5.21695 5.27185 5.28164 5.37394 5.46822 5.53526 5.62471 5.72413 5.90260 6.39973 6.58082 7.25050 7.96566 8.44351 9.21629 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.008798 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.650072 B = 3181.614322 C = 4219.417685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.238 4.238 6 H 0.043 0.957 7 C -0.025 4.025 8 N -0.917 5.917 9 Si 0.941 3.059 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.148 3.852 14 C 0.065 3.935 15 H 0.046 0.954 16 C -0.139 4.139 17 C -0.111 4.111 18 H 0.119 0.881 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.124 4.124 22 C 0.051 3.949 23 H 0.076 0.924 24 O -0.372 6.372 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.028 0.972 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.246 0.754 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 9.023 -9.352 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C 0.019 3.981 4 N -0.316 5.316 5 C -0.369 4.369 6 H 0.061 0.939 7 C -0.222 4.222 8 N -0.562 5.562 9 Si 0.771 3.229 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.022 3.978 14 C 0.005 3.995 15 H 0.064 0.936 16 C -0.177 4.177 17 C -0.130 4.130 18 H 0.137 0.863 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.006 4.006 23 H 0.094 0.906 24 O -0.291 6.291 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.563 8.858 -9.109 12.718 hybrid contribution 0.716 -0.184 0.909 1.172 sum 0.154 8.673 -8.200 11.937 Atomic orbital electron populations 1.21656 0.94073 1.01670 1.01996 1.21941 0.96192 0.99293 0.99697 1.21057 0.83757 0.94374 0.98868 1.43987 1.00602 1.85026 1.02013 1.18951 1.03151 1.23830 0.90932 0.93922 1.25372 1.01538 0.95485 0.99766 1.70062 1.23522 1.21199 1.41447 0.85690 0.79463 0.78042 0.79733 1.21306 1.21995 1.20705 1.20982 0.98781 0.92192 0.85859 1.23661 0.91734 0.95905 0.88177 0.93626 1.22968 0.98842 0.98604 0.97297 1.23259 0.95541 0.97097 0.97085 0.86335 1.22532 0.94478 0.97831 1.00451 1.22341 0.97150 0.99534 0.96190 1.22221 0.93657 1.01549 0.98769 1.23799 0.94682 0.90523 0.91632 0.90630 1.89365 1.60338 1.42448 1.36972 0.91770 0.92531 0.92622 0.94422 0.95291 0.94394 0.92968 0.94450 0.94120 0.90977 0.89138 0.91928 0.94217 0.89270 0.92065 0.88792 0.94141 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.99 0.71 -3.31 16 2 C -0.13 -5.27 6.26 30.60 0.19 -5.08 16 3 C 0.14 6.23 5.67 86.38 0.49 6.71 16 4 N -0.60 -30.73 2.44 -702.02 -1.71 -32.44 16 5 C -0.24 -13.75 9.10 84.03 0.76 -12.98 16 6 H 0.04 2.53 7.93 -2.91 -0.02 2.50 16 7 C -0.03 -1.48 4.95 84.86 0.42 -1.06 16 8 N -0.92 -55.45 11.32 21.65 0.25 -55.21 16 9 Si 0.94 48.26 29.61 68.60 2.03 50.29 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.29 -15.01 7.11 99.48 0.71 -14.31 16 12 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 13 C 0.15 7.15 4.93 86.38 0.43 7.58 16 14 C 0.07 2.66 3.54 31.08 0.11 2.77 16 15 H 0.05 1.80 8.14 -2.38 -0.02 1.79 16 16 C -0.14 -4.41 6.15 31.51 0.19 -4.21 16 17 C -0.11 -3.07 4.01 -9.00 -0.04 -3.10 16 18 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 19 C -0.12 -3.16 6.19 31.79 0.20 -2.96 16 20 C -0.11 -2.89 6.83 31.63 0.22 -2.67 16 21 C -0.12 -3.84 6.57 31.27 0.21 -3.63 16 22 C 0.05 1.72 4.22 31.66 0.13 1.85 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 O -0.37 -16.86 10.40 -148.98 -1.55 -18.41 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 31 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 34 H 0.07 4.08 5.32 -2.39 -0.01 4.07 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.15 7.13 -2.39 -0.02 2.14 16 37 H 0.04 1.37 7.60 -2.39 -0.02 1.35 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.04 1.54 7.92 -2.39 -0.02 1.53 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -66.99 327.66 3.99 -63.00 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.95 Total: 12.85 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 4.03 Total: -20.09 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -1.47 Total: -87.65 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.55 Total: -18.41 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -66.99 3.99 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720862967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.461 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds