Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 N 1.46498 * 109.47580 * 120.00496 * 2 1 3 5 5 C 1.36938 * 120.00177 * 175.08102 * 4 2 1 6 6 H 1.08000 * 119.99781 * 165.39474 * 5 4 2 7 7 C 1.38809 * 120.00212 * 345.66950 * 5 4 2 8 8 N 1.31620 * 119.99539 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00397 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47075 * 59.99577 * 9 7 5 11 11 H 1.48491 * 109.47449 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46932 * 300.00256 * 9 7 5 13 13 C 1.46502 * 120.00004 * 355.07684 * 4 2 1 14 14 C 1.53002 * 109.47376 * 264.41322 * 13 4 2 15 15 H 1.09000 * 110.01338 * 302.49847 * 14 13 4 16 16 C 1.55905 * 110.03144 * 181.10461 * 14 13 4 17 17 C 1.51587 * 102.19688 * 245.80549 * 16 14 13 18 18 H 1.08997 * 110.63184 * 84.62586 * 17 16 14 19 19 C 1.51085 * 122.76083 * 218.23161 * 17 16 14 20 20 C 1.56701 * 104.03587 * 142.43703 * 19 17 16 21 21 C 1.56248 * 106.04004 * 353.67347 * 20 19 17 22 22 C 1.50701 * 101.86134 * 334.96519 * 21 20 19 23 23 H 1.09002 * 108.84813 * 291.98483 * 22 21 20 24 24 O 1.39676 * 127.82762 * 158.72092 * 22 21 20 25 25 H 1.09007 * 109.46725 * 299.99844 * 1 2 3 26 26 H 1.08995 * 109.47460 * 59.99380 * 1 2 3 27 27 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46895 * 240.00502 * 2 1 3 29 29 H 1.09007 * 109.46963 * 183.63045 * 3 2 1 30 30 H 1.08998 * 109.47075 * 303.63406 * 3 2 1 31 31 H 1.08999 * 109.46748 * 63.63602 * 3 2 1 32 32 H 0.97005 * 119.99747 * 180.02562 * 8 7 5 33 33 H 1.09010 * 109.46641 * 24.40709 * 13 4 2 34 34 H 1.09000 * 109.47320 * 144.40441 * 13 4 2 35 35 H 1.09001 * 110.85878 * 3.98162 * 16 14 13 36 36 H 1.08999 * 110.85939 * 127.63239 * 16 14 13 37 37 H 1.08995 * 110.42428 * 261.42484 * 19 17 16 38 38 H 1.09006 * 110.42132 * 23.90422 * 19 17 16 39 39 H 1.09000 * 110.50797 * 234.29392 * 20 19 17 40 40 H 1.09003 * 109.67084 * 112.60587 * 20 19 17 41 41 H 1.09000 * 110.94905 * 216.82831 * 21 20 19 42 42 H 1.08995 * 110.95290 * 93.10875 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.3606 -0.9046 1.3631 6 1 3.7451 -1.1932 2.3302 7 6 4.2276 -0.7449 0.2909 8 7 3.7595 -0.3884 -0.8864 9 14 6.0586 -1.0360 0.5189 10 1 6.2863 -2.4359 0.9590 11 1 6.7611 -0.8018 -0.7682 12 1 6.5839 -0.1022 1.5472 13 6 1.0709 -1.1525 2.2135 14 6 0.9636 -0.1050 3.3236 15 1 1.9465 0.0823 3.7559 16 6 -0.0210 -0.5961 4.4280 17 6 -1.1553 0.4029 4.3132 18 1 -1.8567 0.1000 3.5358 19 6 -1.8941 0.9428 5.5154 20 6 -2.1651 2.4430 5.1528 21 6 -1.4080 2.7066 3.8116 22 6 -0.3230 1.6617 3.8580 23 1 0.3743 1.9134 4.6571 24 8 0.4060 1.1358 2.7889 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1281 1.4432 -0.0651 30 1 1.6244 1.9748 -0.8556 31 1 1.7308 1.9371 0.9208 32 1 4.3653 -0.2772 -1.6358 33 1 0.0918 -1.3003 1.7577 34 1 1.4212 -2.0945 2.6354 35 1 -0.3706 -1.6064 4.2150 36 1 0.4433 -0.5446 5.4128 37 1 -2.8301 0.4035 5.6604 38 1 -1.2715 0.8728 6.4074 39 1 -1.7841 3.0998 5.9348 40 1 -3.2352 2.6002 5.0174 41 1 -0.9824 3.7099 3.7951 42 1 -2.0645 2.5490 2.9560 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720866985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = -3.895384 kcal Electronic energy + Delta-G solvation = -20518.691306 eV Core-core repulsion = 17693.189423 eV Total energy + Delta-G solvation = -2825.501883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33207 -36.69658 -35.25087 -32.13887 -31.40834 -30.22202 -27.68107 -27.38800 -25.73168 -24.29418 -22.72169 -20.86615 -20.28973 -19.84435 -18.81043 -16.87412 -16.03703 -15.25457 -15.10553 -14.61936 -14.37772 -14.02585 -13.54255 -13.31075 -12.88044 -12.38356 -12.21308 -11.92071 -11.60085 -11.28966 -11.26522 -11.22727 -11.06834 -10.76990 -10.71182 -10.59006 -10.45482 -10.35364 -10.29238 -10.09307 -9.70815 -9.41437 -9.37193 -9.25880 -8.82553 -8.17844 -6.64367 -5.40586 -2.98473 3.45575 3.50704 3.51200 3.80202 4.58070 4.69578 4.74762 4.94644 5.19751 5.26476 5.31756 5.45363 5.51002 5.60282 5.62897 5.76214 5.82685 5.85430 5.94014 6.05593 6.07947 6.15559 6.23864 6.35924 6.41222 6.50348 6.57144 6.66273 6.70361 6.77182 6.93774 7.18689 7.30566 7.43651 7.59569 7.62902 7.79422 8.29413 8.31156 8.67698 9.46669 10.07498 10.51651 11.45485 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.032488 B = 0.006317 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.656910 B = 4431.385185 C = 4714.903601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 C -0.131 4.131 4 N -0.591 5.591 5 C -0.234 4.234 6 H 0.067 0.933 7 C -0.008 4.008 8 N -0.907 5.907 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.288 1.288 13 C 0.148 3.852 14 C 0.057 3.943 15 H 0.066 0.934 16 C -0.137 4.137 17 C -0.149 4.149 18 H 0.080 0.920 19 C -0.108 4.108 20 C -0.118 4.118 21 C -0.104 4.104 22 C 0.059 3.941 23 H 0.043 0.957 24 O -0.328 6.328 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.025 0.975 32 H 0.248 0.752 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 2.782 10.197 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.082 3.918 3 C -0.190 4.190 4 N -0.312 5.312 5 C -0.364 4.364 6 H 0.085 0.915 7 C -0.203 4.203 8 N -0.556 5.556 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.019 3.981 14 C -0.002 4.002 15 H 0.084 0.916 16 C -0.175 4.175 17 C -0.167 4.167 18 H 0.099 0.901 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.141 4.141 22 C 0.000 4.000 23 H 0.061 0.939 24 O -0.246 6.246 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.916 2.879 9.786 14.940 hybrid contribution 1.026 -0.027 0.453 1.122 sum -9.890 2.852 10.239 14.518 Atomic orbital electron populations 1.22436 1.00436 0.99128 1.00617 1.20878 0.87159 0.92494 0.91284 1.22226 1.03112 0.97321 0.96359 1.44119 1.02123 1.65312 1.19693 1.19196 0.83024 1.39614 0.94533 0.91501 1.24849 0.97857 1.01998 0.95591 1.70001 1.31959 1.53164 1.00457 0.86305 0.85610 0.77926 0.76554 1.21329 1.21728 1.21514 1.20997 0.94735 0.92969 0.89354 1.24692 0.95007 0.85770 0.94769 0.91559 1.22445 0.96322 0.99337 0.99412 1.22816 0.97542 0.97526 0.98856 0.90124 1.21757 0.99953 0.95370 0.97470 1.22993 1.00072 0.96049 0.96486 1.21735 0.96365 0.98008 0.98011 1.22426 0.92754 0.94594 0.90266 0.93922 1.88677 1.66868 1.36628 1.32471 0.92036 0.94560 0.94777 0.87644 0.90973 0.97164 0.95610 0.94102 0.92561 0.93005 0.90782 0.91645 0.91759 0.91765 0.91586 0.91520 0.91193 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 7.84 37.15 0.29 -3.31 16 2 C 0.19 4.68 2.83 -67.93 -0.19 4.49 16 3 C -0.13 -3.34 8.68 37.16 0.32 -3.02 16 4 N -0.59 -14.88 2.63 -165.66 -0.43 -15.31 16 5 C -0.23 -6.39 9.46 -15.06 -0.14 -6.54 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.21 4.72 -17.43 -0.08 -0.29 16 8 N -0.91 -25.96 7.98 55.49 0.44 -25.52 16 9 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.15 3.07 4.74 -4.04 -0.02 3.05 16 14 C 0.06 1.07 3.58 -25.18 -0.09 0.98 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 16 C -0.14 -1.97 6.41 -25.89 -0.17 -2.13 16 17 C -0.15 -2.00 3.15 -89.77 -0.28 -2.28 16 18 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.11 -1.15 6.72 -25.70 -0.17 -1.33 16 20 C -0.12 -1.19 6.96 -22.99 -0.16 -1.35 16 21 C -0.10 -1.30 6.75 -26.14 -0.18 -1.48 16 22 C 0.06 0.92 3.42 -25.36 -0.09 0.83 16 23 H 0.04 0.67 7.99 -51.93 -0.42 0.26 16 24 O -0.33 -6.42 7.72 -32.04 -0.25 -6.67 16 25 H 0.06 1.29 5.27 -51.92 -0.27 1.02 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 28 H 0.11 3.01 5.73 -51.93 -0.30 2.71 16 29 H 0.07 2.03 5.73 -51.93 -0.30 1.74 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.02 0.64 6.89 -51.93 -0.36 0.28 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.06 1.13 5.45 -51.92 -0.28 0.84 16 34 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.07 1.00 7.76 -51.93 -0.40 0.59 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -28.94 310.24 -8.86 -37.80 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.32 Total: 0.31 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.96 Total: -12.37 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.01 Total: -40.84 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.25 Total: -6.67 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.94 -8.86 -37.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.903 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds